Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000753

Physical Location & Seq

Genomic Coordinates Forward (+)

52380088 .. 52380390

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0423200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGCGTTTCCACTCTCTCAAACCCTCAAGCGAGTCCTCATCTCCGGCGACCACCTCTTCCCGGGAACCGTTTCCCGATCAATCTCCACCACCGCCTCTGCCGCCATGAGGTACCACATCTTCATGGCCGATCGAAACGATCCCAACGACAAAGGCCCCCTCCCCGCCGTCCAGATCAAAGACTGCGACGGCTGCGAAACCCTGGTTCCTCTGCCGGAGGGTTGCAAGAGCGGCGAGGCTAGGGCGGAGGTTAAGCATGGTATGGTGACGGTGGTTGTGCCGAAGCGGAAGAAAGGAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko03015 ko03040 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map03015 map03040 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

RRM_1

Protein Analysis

100

Amino Acids

10.81

Weight (kDa)

8.91

Isoelectric Point (pI)

39.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000753)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26720 FvH4_7g27001 FvH4_7g27001 FvH4_7g27001 FvH4_7g31210 FvH4_7g31211 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31310 FvH4_7g31320 FvH4_7g31670 FvH4_7g31670 FvH4_7g31681 FvH4_7g31682
rosa_chinensis	RchiOBHm_Chr1g0337091 RchiOBHm_Chr1g0337131 RchiOBHm_Chr1g0380941
rosa_laevigata	RLG00000026258 RLG00000026260 RLG00000026268 RLG00000026269 RLG00000029305
rosa_multiflora	Rmu_co8190652.1_g000001 Rmu_co8273449.1_g000001 Rmu_co8310417.1_g000001 Rmu_sc0002160.1_g000028 Rmu_sc0002160.1_g000031 Rmu_sc0002962.1_g000022 Rmu_sc0004623.1_g000006 Rmu_sc0004623.1_g000007 Rmu_sc0013826.1_g000002 Rmu_sc0013826.1_g000003 Rmu_sc0020974.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105360 Rroxscaffold_4G00314970 Rroxscaffold_6G00413200
rosa_rugosa	Rorug01G0131100 Rorug01G0423200 Rorug01G0424100
rosa_samantha	Rh1AG151800 Rh1AG152100 Rh1AG447500 Rh1AG447600 Rh1AG448600 Rh1AG449500 Rh1AG449700 Rh1BG119600 Rh1BG404200 Rh1BG405400 Rh1CG143000 Rh1CG418300 Rh1DG159000 Rh1DG159300 Rh1DG159400 Rh1DG434600 Rh1DG435500 Rh1DG435900
rosa_wichuraiana	Rw0G005920 Rw0G005960 Rw0G005970 Rw1G012410 Rw1G012420 Rw1G038950 Rw1G039110 Rw1G039170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	111
AccB1I	GGYRCC	1 cut(s)	111
AccBSI	CCGCTC	1 cut(s)	231
AciI	CCGC	6 cut(s)	93, 102, 165, 231, 245, 286
AclWI	GGATC	1 cut(s)	134
AcoI	YGGCCR	1 cut(s)	126
AfaI	GTAC	1 cut(s)	113
AfiI	CCNNNNNNNGG	2 cut(s)	61, 108
AjnI	CCWGG	1 cut(s)	201
AlwI	GGATC	1 cut(s)	134
Ama87I	CYCGRG	1 cut(s)	61
AoxI	GGCC	2 cut(s)	126, 154
ApeKI	GCWGC	1 cut(s)	192
Asp700I	GAANNNNTTC	1 cut(s)	70
Asp718I	GGTACC	1 cut(s)	111
AspS9I	GGNCC	1 cut(s)	155
AsuC2I	CCSGG	2 cut(s)	62, 63
AsuHPI	GGTGA	1 cut(s)	277
AvaI	CYCGRG	1 cut(s)	61
BanI	GGYRCC	1 cut(s)	111
BarI	GAAGNNNNNNTAC	2 cut(s)	104, 136
BbvI	GCAGC	1 cut(s)	179
BceAI	ACGGC	2 cut(s)	152, 205
BciT130I	CCWGG	1 cut(s)	203
BcnI	CCSGG	2 cut(s)	62, 63
BfaI	CTAG	1 cut(s)	240
BisI	GCNGC	3 cut(s)	102, 193, 232
BlsI	GCNGC	3 cut(s)	103, 194, 233
Bme1390I	CCNGG	3 cut(s)	62, 63, 203
BmeT110I	CYCGRG	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	4 cut(s)	67, 113, 157, 207
BmrFI	CCNGG	3 cut(s)	62, 63, 203
BpuEI	CTTGAG	1 cut(s)	11
BpuMI	CCSGG	2 cut(s)	62, 63
BsaJI	CCNNGG	2 cut(s)	61, 201
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 108
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	2 cut(s)	61, 201
BseLI	CCNNNNNNNGG	2 cut(s)	61, 108
BseXI	GCAGC	1 cut(s)	179
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	2 cut(s)	128, 156
BshNI	GGYRCC	1 cut(s)	111
BsiEI	CGRYCG	1 cut(s)	133
BsiHKCI	CYCGRG	1 cut(s)	61
BsiSI	CCGG	3 cut(s)	45, 62, 215
BslI	CCNNNNNNNGG	2 cut(s)	61, 108
BsnI	GGCC	2 cut(s)	128, 156
BsoBI	CYCGRG	1 cut(s)	61
Bsp143I	GATC	4 cut(s)	77, 130, 139, 174
BspACI	CCGC	6 cut(s)	93, 102, 165, 231, 245, 286
BspANI	GGCC	2 cut(s)	128, 156
BspLI	GGNNCC	4 cut(s)	67, 113, 157, 207
BspPI	GGATC	1 cut(s)	134
BspT107I	GGYRCC	1 cut(s)	111
BsrBI	CCGCTC	1 cut(s)	231
BssECI	CCNNGG	2 cut(s)	61, 201
BssMI	GATC	4 cut(s)	77, 130, 139, 174
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	2 cut(s)	70, 271
Bst6I	CTCTTC	1 cut(s)	62
BstKTI	GATC	4 cut(s)	80, 133, 142, 177
BstMBI	GATC	4 cut(s)	77, 130, 139, 174
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 192, 231
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	3 cut(s)	60, 61, 201
BstV1I	GCAGC	1 cut(s)	179
BsuRI	GGCC	2 cut(s)	128, 156
Cfr13I	GGNCC	1 cut(s)	155
Cfr9I	CCCGGG	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	112
CviAII	CATG	3 cut(s)	106, 124, 257
CviJI	RGCY	4 cut(s)	128, 156, 192, 239
CviKI_1	RGCY	4 cut(s)	128, 156, 192, 239
CviQI	GTAC	1 cut(s)	112
DpnI	GATC	4 cut(s)	79, 132, 141, 176
DpnII	GATC	4 cut(s)	77, 130, 139, 174
EaeI	YGGCCR	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
EciI	GGCGGA	1 cut(s)	260
Eco88I	CYCGRG	1 cut(s)	61
EcoO109I	RGGNCCY	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	201
FaeI	CATG	3 cut(s)	109, 127, 260
FaiI	YATR	4 cut(s)	107, 125, 258, 263
FatI	CATG	3 cut(s)	105, 123, 256
FauI	CCCGC	1 cut(s)	172
Fnu4HI	GCNGC	3 cut(s)	102, 193, 232
Fsp4HI	GCNGC	3 cut(s)	102, 193, 232
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	3 cut(s)	102, 193, 232
HaeIII	GGCC	2 cut(s)	128, 156
HapII	CCGG	3 cut(s)	45, 62, 215
Hin1II	CATG	3 cut(s)	109, 127, 260
HinfI	GANTC	1 cut(s)	33
HpaII	CCGG	3 cut(s)	45, 62, 215
HphI	GGTGA	1 cut(s)	277
Hpy188III	TCNNGA	2 cut(s)	75, 172
Hpy99I	CGWCG	1 cut(s)	191
HpyCH4III	ACNGT	2 cut(s)	70, 271
HpyCH4V	TGCA	1 cut(s)	225
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 192, 231
Hsp92II	CATG	3 cut(s)	109, 127, 260
KpnI	GGTACC	1 cut(s)	115
Kzo9I	GATC	4 cut(s)	77, 130, 139, 174
LpnPI	CCDG	6 cut(s)	58, 75, 185, 188, 215, 228
Lsp1109I	GCAGC	1 cut(s)	179
MaeI	CTAG	1 cut(s)	240
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	4 cut(s)	79, 132, 141, 176
MbiI	CCGCTC	1 cut(s)	231
MboI	GATC	4 cut(s)	77, 130, 139, 174
MboII	GAAGA	3 cut(s)	49, 112, 301
MlyI	GAGTC	1 cut(s)	42
MroXI	GAANNNNTTC	1 cut(s)	70
MseI	TTAA	1 cut(s)	252
MslI	CAYNNNNRTG	1 cut(s)	122
MspI	CCGG	3 cut(s)	45, 62, 215
MspR9I	CCNGG	3 cut(s)	62, 63, 203
MvaI	CCWGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	3 cut(s)	101, 192, 231
NciI	CCSGG	2 cut(s)	62, 63
NdeII	GATC	4 cut(s)	77, 130, 139, 174
NlaIII	CATG	3 cut(s)	109, 127, 260
NlaIV	GGNNCC	4 cut(s)	67, 113, 157, 207
NmuCI	GTSAC	1 cut(s)	265
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	70
PkrI	GCNGC	3 cut(s)	103, 194, 233
Ple19I	CGATCG	1 cut(s)	133
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	4 cut(s)	67, 113, 157, 207
PspPI	GGNCC	1 cut(s)	155
PvuI	CGATCG	1 cut(s)	133
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
RseI	CAYNNNNRTG	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	3 cut(s)	102, 193, 232
Sau3AI	GATC	4 cut(s)	77, 130, 139, 174
Sau96I	GGNCC	1 cut(s)	155
SchI	GAGTC	1 cut(s)	42
ScrFI	CCNGG	3 cut(s)	62, 63, 203
SetI	ASST	3 cut(s)	57, 113, 252
SmaI	CCCGGG	1 cut(s)	63
SmiMI	CAYNNNNRTG	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
SsiI	CCGC	6 cut(s)	93, 102, 165, 231, 245, 286
SspMI	CTAG	1 cut(s)	240
StyD4I	CCNGG	3 cut(s)	60, 61, 201
TaaI	ACNGT	2 cut(s)	70, 271
TaqI	TCGA	1 cut(s)	133
TauI	GCSGC	2 cut(s)	104, 234
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	1 cut(s)	192
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	1 cut(s)	112
TspMI	CCCGGG	1 cut(s)	61
XmaI	CCCGGG	1 cut(s)	61
XmnI	GAANNNNTTC	1 cut(s)	70
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.