Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000753

Physical Location & Seq

Genomic Coordinates Forward (+)

66748870 .. 66749124

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG447600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGGTTGTTGTGCCTCCGGCTCCCAAATCTTCTTCGCCGGTGGCATGGCTCCACTACCACATAGGGAAAGACGATTTCTGCCAAGTGGAGATGTCTATAGCTTTGAACCCAAGTCTACGTTTTGGAGAAAGCATGATTGGAGTTTCCTGAAGGGGAAACCAGACCCCTTGCCTTTTGAGGTGAACGGAAATCTCTATTGCCTCGCAGGAAGGCCCATAGGTTATTCTCTTGATCGTCCCACTTTCGAGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko03015 ko03040 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map03015 map03040 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

RRM_1

Protein Analysis

84

Amino Acids

9.49

Weight (kDa)

8.55

Isoelectric Point (pI)

37.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000753)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26720 FvH4_7g27001 FvH4_7g27001 FvH4_7g27001 FvH4_7g31210 FvH4_7g31211 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31310 FvH4_7g31320 FvH4_7g31670 FvH4_7g31670 FvH4_7g31681 FvH4_7g31682
rosa_chinensis	RchiOBHm_Chr1g0337091 RchiOBHm_Chr1g0337131 RchiOBHm_Chr1g0380941
rosa_laevigata	RLG00000026258 RLG00000026260 RLG00000026268 RLG00000026269 RLG00000029305
rosa_multiflora	Rmu_co8190652.1_g000001 Rmu_co8273449.1_g000001 Rmu_co8310417.1_g000001 Rmu_sc0002160.1_g000028 Rmu_sc0002160.1_g000031 Rmu_sc0002962.1_g000022 Rmu_sc0004623.1_g000006 Rmu_sc0004623.1_g000007 Rmu_sc0013826.1_g000002 Rmu_sc0013826.1_g000003 Rmu_sc0020974.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105360 Rroxscaffold_4G00314970 Rroxscaffold_6G00413200
rosa_rugosa	Rorug01G0131100 Rorug01G0423200 Rorug01G0424100
rosa_samantha	Rh1AG151800 Rh1AG152100 Rh1AG447500 Rh1AG447600 Rh1AG448600 Rh1AG449500 Rh1AG449700 Rh1BG119600 Rh1BG404200 Rh1BG405400 Rh1CG143000 Rh1CG418300 Rh1DG159000 Rh1DG159300 Rh1DG159400 Rh1DG434600 Rh1DG435500 Rh1DG435900
rosa_wichuraiana	Rw0G005920 Rw0G005960 Rw0G005970 Rw1G012410 Rw1G012420 Rw1G038950 Rw1G039110 Rw1G039170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	116
AcuI	CTGAAG	1 cut(s)	170
AgsI	TTSAA	1 cut(s)	107
AjuI	GAANNNNNNNTTGG	2 cut(s)	121, 153
AluBI	AGCT	1 cut(s)	102
AluI	AGCT	1 cut(s)	102
AoxI	GGCC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	213
AsuHPI	GGTGA	1 cut(s)	193
BfmI	CTRYAG	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	213
BmiI	GGNNCC	2 cut(s)	22, 51
Bse118I	RCCGGY	1 cut(s)	38
BshFI	GGCC	1 cut(s)	214
BsiSI	CCGG	2 cut(s)	18, 39
BslFI	GGGAC	1 cut(s)	222
BsmFI	GGGAC	1 cut(s)	222
BsnI	GGCC	1 cut(s)	214
Bsp143I	GATC	1 cut(s)	232
BspANI	GGCC	1 cut(s)	214
BspLI	GGNNCC	2 cut(s)	22, 51
BsrFI	RCCGGY	1 cut(s)	38
BssAI	RCCGGY	1 cut(s)	38
BssMI	GATC	1 cut(s)	232
BstKTI	GATC	1 cut(s)	235
BstMBI	GATC	1 cut(s)	232
BstSFI	CTRYAG	1 cut(s)	97
BsuRI	GGCC	1 cut(s)	214
Cfr10I	RCCGGY	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	213
CviAII	CATG	2 cut(s)	46, 134
CviJI	RGCY	4 cut(s)	21, 50, 102, 214
CviKI_1	RGCY	4 cut(s)	21, 50, 102, 214
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	170
FaeI	CATG	2 cut(s)	49, 137
FaiI	YATR	6 cut(s)	47, 63, 99, 135, 218, 253
FaqI	GGGAC	1 cut(s)	222
FatI	CATG	2 cut(s)	45, 133
FblI	GTMKAC	1 cut(s)	116
HaeIII	GGCC	1 cut(s)	214
HapII	CCGG	2 cut(s)	18, 39
Hin1II	CATG	2 cut(s)	49, 137
HpaII	CCGG	2 cut(s)	18, 39
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	2 cut(s)	117, 184
Hpy188III	TCNNGA	2 cut(s)	148, 230
Hpy8I	GTNNAC	2 cut(s)	117, 184
HpyAV	CCTTC	2 cut(s)	145, 204
HpyCH4IV	ACGT	1 cut(s)	119
HpySE526I	ACGT	1 cut(s)	119
Hsp92II	CATG	2 cut(s)	49, 137
Kzo9I	GATC	1 cut(s)	232
LmnI	GCTCC	2 cut(s)	26, 55
LpnPI	CCDG	5 cut(s)	31, 52, 161, 174, 192
MaeII	ACGT	1 cut(s)	119
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	2 cut(s)	22, 25
MnlI	CCTC	4 cut(s)	25, 172, 212, 241
MspI	CCGG	2 cut(s)	18, 39
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	2 cut(s)	49, 137
NlaIV	GGNNCC	2 cut(s)	22, 51
PspN4I	GGNNCC	2 cut(s)	22, 51
PspPI	GGNCC	1 cut(s)	213
Sau3AI	GATC	1 cut(s)	232
Sau96I	GGNCC	1 cut(s)	213
SetI	ASST	5 cut(s)	104, 122, 183, 223, 252
SfcI	CTRYAG	1 cut(s)	97
SgrAI	CRCCGGYG	1 cut(s)	38
TaiI	ACGT	1 cut(s)	122
TaqI	TCGA	1 cut(s)	246
TspGWI	ACGGA	1 cut(s)	201
XmiI	GTMKAC	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.