Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000753

Physical Location & Seq

Genomic Coordinates Reverse (-)

22859027 .. 22860796

Gene Structure 1770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g31681.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGTCGTATCCTGAGGAGAATGAGATTCGCTCCATACGGGTCGACGGATTGCCGCCGACGAACGATGCGATTTATCTCTTCAGCTGCTTCCATGACAACGCCAAGGTTTTGGCTGCAACGGTTTTGCGTAACTGGCTAACACAAGTGCCGCTAGATTATGGTTTTGTGGAGTTTGCTTCTCGGAGAGATGCTGAGTTTGTCTTGGAATCCTACAATGGTGAGCGGATGCCCAACTTGAGTCATGAGAGGAGATTCTGCCTCAGCTGGGACACTGATGGTTCCGGTACTAGGTGGCGCTGGGATTATTTTTACCAAGGTTGCTCTTTCTTTGGTTATAATGATATTGGTAAAGATCTGGATGCCTATACAGTGATCAAGGAGCTGCAATCTGCCTGCCCAAATACGTGTGGAGATTCAGGGGACACAGAAAACCAGCTAGATCATGCAAAGTCGAATGGTTTAAGTCCTGATGGCTATTTGGAAACGGATGTTGACAAGCGTTTGAAGCTTACGGACATGCCTCTCACTCATCCAAACATGTATCAACAAGGATGTTCCGGCCCTAGTCTTACAAACCAACAGAACCAACCAGACCCGATGCAGTGGAATGGTGCTTGTGGTGCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

210

Amino Acids

23.65

Weight (kDa)

4.58

Isoelectric Point (pI)

47.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	12 - 77	3.2e-07	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000753)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26720 FvH4_7g27001 FvH4_7g27001 FvH4_7g27001 FvH4_7g31210 FvH4_7g31211 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31310 FvH4_7g31320 FvH4_7g31670 FvH4_7g31670 FvH4_7g31681 FvH4_7g31682
rosa_chinensis	RchiOBHm_Chr1g0337091 RchiOBHm_Chr1g0337131 RchiOBHm_Chr1g0380941
rosa_laevigata	RLG00000026258 RLG00000026260 RLG00000026268 RLG00000026269 RLG00000029305
rosa_multiflora	Rmu_co8190652.1_g000001 Rmu_co8273449.1_g000001 Rmu_co8310417.1_g000001 Rmu_sc0002160.1_g000028 Rmu_sc0002160.1_g000031 Rmu_sc0002962.1_g000022 Rmu_sc0004623.1_g000006 Rmu_sc0004623.1_g000007 Rmu_sc0013826.1_g000002 Rmu_sc0013826.1_g000003 Rmu_sc0020974.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105360 Rroxscaffold_4G00314970 Rroxscaffold_6G00413200
rosa_rugosa	Rorug01G0131100 Rorug01G0423200 Rorug01G0424100
rosa_samantha	Rh1AG151800 Rh1AG152100 Rh1AG447500 Rh1AG447600 Rh1AG448600 Rh1AG449500 Rh1AG449700 Rh1BG119600 Rh1BG404200 Rh1BG405400 Rh1CG143000 Rh1CG418300 Rh1DG159000 Rh1DG159300 Rh1DG159400 Rh1DG434600 Rh1DG435500 Rh1DG435900
rosa_wichuraiana	Rw0G005920 Rw0G005960 Rw0G005970 Rw1G012410 Rw1G012420 Rw1G038950 Rw1G039110 Rw1G039170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	336
AccBSI	CCGCTC	1 cut(s)	223
AccI	GTMKAC	1 cut(s)	42
AciI	CCGC	3 cut(s)	53, 149, 223
AcuI	CTGAAG	1 cut(s)	64
AfaI	GTAC	1 cut(s)	286
AfiI	CCNNNNNNNGG	2 cut(s)	265, 288
AflIII	ACRYGT	2 cut(s)	404, 537
AgsI	TTSAA	1 cut(s)	505
AluBI	AGCT	5 cut(s)	84, 264, 382, 436, 508
AluI	AGCT	5 cut(s)	84, 264, 382, 436, 508
AoxI	GGCC	1 cut(s)	559
ApeKI	GCWGC	4 cut(s)	84, 113, 382, 623
AspLEI	GCGC	1 cut(s)	297
AspS9I	GGNCC	1 cut(s)	560
AsuHPI	GGTGA	1 cut(s)	230
AxyI	CCTNAGG	1 cut(s)	12
BbvCI	CCTCAGC	1 cut(s)	260
BbvI	GCAGC	4 cut(s)	71, 100, 369, 610
BccI	CCATC	2 cut(s)	269, 464
BciVI	GTATCC	1 cut(s)	18
BclI	TGATCA	1 cut(s)	372
BfaI	CTAG	4 cut(s)	152, 288, 437, 564
BfoI	RGCGCY	1 cut(s)	298
BfuI	GTATCC	1 cut(s)	18
BglII	AGATCT	1 cut(s)	352
BisI	GCNGC	6 cut(s)	53, 85, 114, 149, 383, 624
BlsI	GCNGC	6 cut(s)	54, 86, 115, 150, 384, 625
BmgT120I	GGNCC	1 cut(s)	560
BmiI	GGNNCC	1 cut(s)	280
BmsI	GCATC	5 cut(s)	55, 178, 216, 349, 588
BplI	GAGNNNNNCTC	2 cut(s)	14, 46
Bpu10I	CCTNAGC	1 cut(s)	260
BpuEI	CTTGAG	1 cut(s)	256
BsaAI	YACGTR	1 cut(s)	405
BsaJI	CCNNGG	2 cut(s)	102, 313
BsaWI	WCCGGW	1 cut(s)	281
Bsc4I	CCNNNNNNNGG	2 cut(s)	265, 288
Bse1I	ACTGG	1 cut(s)	137
Bse21I	CCTNAGG	1 cut(s)	12
BseDI	CCNNGG	2 cut(s)	102, 313
BseGI	GGATG	5 cut(s)	231, 364, 493, 529, 557
BseLI	CCNNNNNNNGG	2 cut(s)	265, 288
BseMII	CTCAG	2 cut(s)	183, 274
BseNI	ACTGG	1 cut(s)	137
BseRI	GAGGAG	2 cut(s)	29, 262
BseXI	GCAGC	4 cut(s)	71, 100, 369, 610
BseYI	CCCAGC	2 cut(s)	264, 297
BshFI	GGCC	1 cut(s)	561
BsiSI	CCGG	2 cut(s)	282, 558
BslFI	GGGAC	2 cut(s)	281, 434
BslI	CCNNNNNNNGG	2 cut(s)	265, 288
BsmFI	GGGAC	2 cut(s)	281, 434
BsnI	GGCC	1 cut(s)	561
Bsp143I	GATC	3 cut(s)	352, 372, 439
BspACI	CCGC	3 cut(s)	53, 149, 223
BspANI	GGCC	1 cut(s)	561
BspCNI	CTCAG	3 cut(s)	4, 184, 273
BspHI	TCATGA	1 cut(s)	241
BspLI	GGNNCC	1 cut(s)	280
BsrBI	CCGCTC	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	137
BssECI	CCNNGG	2 cut(s)	102, 313
BssMI	GATC	3 cut(s)	352, 372, 439
BssT1I	CCWWGG	2 cut(s)	102, 313
Bst4CI	ACNGT	2 cut(s)	121, 370
Bst6I	CTCTTC	1 cut(s)	83
BstBAI	YACGTR	1 cut(s)	405
BstC8I	GCNNGC	1 cut(s)	394
BstDEI	CTNAG	3 cut(s)	12, 192, 260
BstF5I	GGATG	5 cut(s)	231, 364, 493, 529, 557
BstH2I	RGCGCY	1 cut(s)	298
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	3 cut(s)	355, 375, 442
BstMBI	GATC	3 cut(s)	352, 372, 439
BstMWI	GCNNNNNNNGC	3 cut(s)	133, 505, 620
BstNSI	RCATGY	2 cut(s)	520, 541
BstV1I	GCAGC	4 cut(s)	71, 100, 369, 610
BstX2I	RGATCY	1 cut(s)	352
BstXI	CCANNNNNNTGG	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	352
Bsu36I	CCTNAGG	1 cut(s)	12
BsuI	GTATCC	1 cut(s)	18
BsuRI	GGCC	1 cut(s)	561
BtsCI	GGATG	5 cut(s)	231, 364, 493, 529, 557
BtsI	GCAGTG	1 cut(s)	608
BtsIMutI	CAGTG	3 cut(s)	270, 375, 608
Cac8I	GCNNGC	1 cut(s)	394
CciI	TCATGA	1 cut(s)	241
CfoI	GCGC	1 cut(s)	297
Cfr13I	GGNCC	1 cut(s)	560
Csp6I	GTAC	1 cut(s)	285
CviAII	CATG	5 cut(s)	92, 242, 443, 517, 538
CviJI	RGCY	9 cut(s)	84, 113, 136, 264, 382, 436, 474, 508, 561
CviKI_1	RGCY	9 cut(s)	84, 113, 136, 264, 382, 436, 474, 508, 561
CviQI	GTAC	1 cut(s)	285
DdeI	CTNAG	3 cut(s)	12, 192, 260
DpnI	GATC	3 cut(s)	354, 374, 441
DpnII	GATC	3 cut(s)	352, 372, 439
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
Eco130I	CCWWGG	2 cut(s)	102, 313
Eco57I	CTGAAG	1 cut(s)	64
Eco81I	CCTNAGG	1 cut(s)	12
EcoT14I	CCWWGG	2 cut(s)	102, 313
ErhI	CCWWGG	2 cut(s)	102, 313
FaeI	CATG	5 cut(s)	95, 245, 446, 520, 541
FaqI	GGGAC	2 cut(s)	281, 434
FatI	CATG	5 cut(s)	91, 241, 442, 516, 537
FbaI	TGATCA	1 cut(s)	372
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	6 cut(s)	53, 85, 114, 149, 383, 624
FokI	GGATG	5 cut(s)	238, 371, 500, 516, 564
Fsp4HI	GCNGC	6 cut(s)	53, 85, 114, 149, 383, 624
FspBI	CTAG	4 cut(s)	152, 288, 437, 564
GlaI	GCGC	1 cut(s)	296
GluI	GCNGC	6 cut(s)	53, 85, 114, 149, 383, 624
GsaI	CCCAGC	2 cut(s)	268, 301
HaeII	RGCGCY	1 cut(s)	298
HaeIII	GGCC	1 cut(s)	561
HapII	CCGG	2 cut(s)	282, 558
HhaI	GCGC	1 cut(s)	297
Hin1II	CATG	5 cut(s)	95, 245, 446, 520, 541
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HincII	GTYRAC	2 cut(s)	43, 493
HindII	GTYRAC	2 cut(s)	43, 493
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	5 cut(s)	25, 206, 238, 252, 413
HpaII	CCGG	2 cut(s)	282, 558
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	2 cut(s)	43, 493
Hpy188I	TCNGA	1 cut(s)	183
Hpy188III	TCNNGA	4 cut(s)	11, 242, 356, 467
Hpy8I	GTNNAC	2 cut(s)	43, 493
Hpy99I	CGWCG	2 cut(s)	47, 61
HpyCH4III	ACNGT	2 cut(s)	121, 370
HpyCH4IV	ACGT	1 cut(s)	404
HpyCH4V	TGCA	5 cut(s)	116, 385, 446, 601, 626
HpyF10VI	GCNNNNNNNGC	3 cut(s)	133, 505, 620
HpyF3I	CTNAG	3 cut(s)	12, 192, 260
HpySE526I	ACGT	1 cut(s)	404
Hsp92II	CATG	5 cut(s)	95, 245, 446, 520, 541
HspAI	GCGC	1 cut(s)	295
Ksp22I	TGATCA	1 cut(s)	372
Kzo9I	GATC	3 cut(s)	352, 372, 439
LmnI	GCTCC	2 cut(s)	35, 379
Lsp1109I	GCAGC	4 cut(s)	71, 100, 369, 610
LweI	GCATC	5 cut(s)	55, 178, 216, 349, 588
MaeI	CTAG	4 cut(s)	152, 288, 437, 564
MaeII	ACGT	1 cut(s)	404
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	3 cut(s)	354, 374, 441
MbiI	CCGCTC	1 cut(s)	223
MboI	GATC	3 cut(s)	352, 372, 439
MboII	GAAGA	1 cut(s)	70
MflI	RGATCY	1 cut(s)	352
MlyI	GAGTC	1 cut(s)	247
MnlI	CCTC	4 cut(s)	7, 240, 269, 531
MseI	TTAA	1 cut(s)	461
MspA1I	CMGCKG	2 cut(s)	84, 264
MspI	CCGG	2 cut(s)	282, 558
MwoI	GCNNNNNNNGC	3 cut(s)	133, 505, 620
NdeII	GATC	3 cut(s)	352, 372, 439
NlaIII	CATG	5 cut(s)	95, 245, 446, 520, 541
NlaIV	GGNNCC	1 cut(s)	280
NspI	RCATGY	2 cut(s)	520, 541
PagI	TCATGA	1 cut(s)	241
PciI	ACATGT	1 cut(s)	537
PcsI	WCGNNNNNNNCGW	1 cut(s)	65
PfeI	GAWTC	4 cut(s)	25, 206, 252, 413
PkrI	GCNGC	6 cut(s)	54, 86, 115, 150, 384, 625
PleI	GAGTC	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	246
Ppu21I	YACGTR	1 cut(s)	405
PscI	ACATGT	1 cut(s)	537
PsiI	TTATAA	1 cut(s)	336
PspFI	CCCAGC	2 cut(s)	264, 297
PspN4I	GGNNCC	1 cut(s)	280
PspPI	GGNCC	1 cut(s)	560
PsuI	RGATCY	1 cut(s)	352
PvuII	CAGCTG	2 cut(s)	84, 264
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
SalI	GTCGAC	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	461
SatI	GCNGC	6 cut(s)	53, 85, 114, 149, 383, 624
Sau3AI	GATC	3 cut(s)	352, 372, 439
Sau96I	GGNCC	1 cut(s)	560
SchI	GAGTC	1 cut(s)	247
SetI	ASST	9 cut(s)	86, 108, 266, 293, 319, 384, 407, 438, 510
SfaNI	GCATC	5 cut(s)	55, 178, 216, 349, 588
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
SsiI	CCGC	3 cut(s)	53, 149, 223
SspMI	CTAG	4 cut(s)	152, 288, 437, 564
StyI	CCWWGG	2 cut(s)	102, 313
TaaI	ACNGT	2 cut(s)	121, 370
TaiI	ACGT	1 cut(s)	407
TaqI	TCGA	2 cut(s)	42, 452
TauI	GCSGC	2 cut(s)	55, 151
TfiI	GAWTC	4 cut(s)	25, 206, 252, 413
Tru1I	TTAA	1 cut(s)	461
Tru9I	TTAA	1 cut(s)	461
TscAI	CASTG	3 cut(s)	277, 375, 608
TseI	GCWGC	4 cut(s)	84, 113, 382, 623
TspGWI	ACGGA	3 cut(s)	60, 500, 527
TspRI	CASTG	3 cut(s)	277, 375, 608
XceI	RCATGY	2 cut(s)	520, 541
XmiI	GTMKAC	1 cut(s)	42
XspI	CTAG	4 cut(s)	152, 288, 437, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.