RLG00000026268

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000753
Physical Location & Seq
Forward (+)
1774328 .. 1775306
979 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026268

Sequence Viewer

Length: 618 bp
ATGCAGAAGCAACAACATCAATTCGAAGTGCTAAACTTGGACAGCATAATCATAAATGCAGACTCTGAAGCATTTTTAAAATACATACAGTTGGACCAATCCTCCGCTGAAGCTAAACAGACGTATAATGAAGCCCTTGACAGACTGATTGAGACCATATTTCCAGCAGACCTATCATATCCGCTTGAGTTCGAGCACTTTAGGCATCTGGCCAGTAGGGCAAGCAATCAGACTGAGCTCAAGCAGTTGTTCTACCACCCAGTACTGCTGTCCAGAGTAGAAAGAATACTTTTTGTCCATCATGCCTTCGTCATGATTGGACAAAACTGTATGACAGAGGACAAAACAATATGGAAGAGACTAGAAGAAGAGCAGAAGTTCATGAACATCGAGAACACAATCAGTGGCAAACCGATATTAAAGGCAGTGTACAAGAAACGGATGCAAGGGCAGCTTTCAAATTCTACCGGCACTGCATCCTTCACTACAACGACTATTTGGAAGAGATCAGAGCCCGAGAACATTTTTTTGTTCTTGTCCCCCGCGAAGCGAACCCGAGATGGCCACAATATGCCAGAGGACCACTGTTCAACTGAGATCAATGTTCTCTTCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

23.91

Weight (kDa)

6.24

Isoelectric Point (pI)

60.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 545
AciI CCGC 3 cut(s) 105, 182, 543
AcoI YGGCCR 2 cut(s) 210, 562
AcsI RAATTY 1 cut(s) 460
AcuI CTGAAG 2 cut(s) 87, 129
AfaI GTAC 2 cut(s) 264, 431
AgsI TTSAA 3 cut(s) 459, 591, 613
AluBI AGCT 3 cut(s) 113, 238, 454
AluI AGCT 3 cut(s) 113, 238, 454
Alw21I GWGCWC 2 cut(s) 198, 240
Alw26I GTCTC 2 cut(s) 146, 352
AlwNI CAGNNNCTG 1 cut(s) 65
Ama87I CYCGRG 2 cut(s) 515, 555
AoxI GGCC 2 cut(s) 210, 562
ApeKI GCWGC 1 cut(s) 451
ApoI RAATTY 1 cut(s) 460
AspS9I GGNCC 2 cut(s) 94, 580
AsuII TTCGAA 1 cut(s) 24
AvaI CYCGRG 2 cut(s) 515, 555
AvaII GGWCC 2 cut(s) 94, 580
BalI TGGCCA 2 cut(s) 212, 564
BanII GRGCYC 2 cut(s) 240, 516
Bbv12I GWGCWC 2 cut(s) 198, 240
BbvI GCAGC 1 cut(s) 463
BccI CCATC 2 cut(s) 306, 554
BcoDI GTCTC 2 cut(s) 146, 352
BfaI CTAG 1 cut(s) 362
BglI GCCNNNNNGGC 1 cut(s) 218
BisI GCNGC 1 cut(s) 452
BlsI GCNGC 1 cut(s) 453
BmcAI AGTACT 1 cut(s) 264
Bme18I GGWCC 2 cut(s) 94, 580
BmeT110I CYCGRG 2 cut(s) 515, 555
BmgT120I GGNCC 2 cut(s) 94, 580
BmrI ACTGGG 1 cut(s) 254
BmsI GCATC 3 cut(s) 214, 432, 485
BmuI ACTGGG 1 cut(s) 254
Bpu14I TTCGAA 1 cut(s) 24
BpuEI CTTGAG 2 cut(s) 206, 224
BsaI GGTCTC 1 cut(s) 146
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bse118I RCCGGY 1 cut(s) 467
Bse1I ACTGG 2 cut(s) 213, 260
BseGI GGATG 2 cut(s) 447, 476
BseMII CTCAG 2 cut(s) 225, 585
BseNI ACTGG 2 cut(s) 213, 260
BseXI GCAGC 1 cut(s) 463
Bsh1236I CGCG 1 cut(s) 545
BshFI GGCC 2 cut(s) 212, 564
BsiHKAI GWGCWC 2 cut(s) 198, 240
BsiHKCI CYCGRG 2 cut(s) 515, 555
BsiSI CCGG 1 cut(s) 468
BslFI GGGAC 1 cut(s) 523
BsmAI GTCTC 2 cut(s) 146, 352
BsmFI GGGAC 1 cut(s) 523
BsnI GGCC 2 cut(s) 212, 564
Bso31I GGTCTC 1 cut(s) 146
BsoBI CYCGRG 2 cut(s) 515, 555
Bsp119I TTCGAA 1 cut(s) 24
Bsp1286I GDGCHC 3 cut(s) 198, 240, 516
Bsp1407I TGTACA 1 cut(s) 429
Bsp143I GATC 2 cut(s) 506, 597
BspACI CCGC 3 cut(s) 105, 182, 543
BspANI GGCC 2 cut(s) 212, 564
BspCNI CTCAG 2 cut(s) 226, 586
BspFNI CGCG 1 cut(s) 545
BspHI TCATGA 2 cut(s) 312, 381
BspQI GCTCTTC 1 cut(s) 363
BspT104I TTCGAA 1 cut(s) 24
BspTNI GGTCTC 1 cut(s) 146
BsrFI RCCGGY 1 cut(s) 467
BsrGI TGTACA 1 cut(s) 429
BsrI ACTGG 2 cut(s) 213, 260
BssAI RCCGGY 1 cut(s) 467
BssMI GATC 2 cut(s) 506, 597
Bst4CI ACNGT 3 cut(s) 90, 329, 587
Bst6I CTCTTC 4 cut(s) 350, 363, 497, 614
BstAUI TGTACA 1 cut(s) 429
BstBI TTCGAA 1 cut(s) 24
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 2 cut(s) 234, 594
BstF5I GGATG 2 cut(s) 447, 476
BstFNI CGCG 1 cut(s) 545
BstKTI GATC 2 cut(s) 509, 600
BstMAI GTCTC 2 cut(s) 146, 352
BstMBI GATC 2 cut(s) 506, 597
BstMWI GCNNNNNNNGC 3 cut(s) 202, 218, 451
BstUI CGCG 1 cut(s) 545
BstV1I GCAGC 1 cut(s) 463
BsuRI GGCC 2 cut(s) 212, 564
BtsCI GGATG 2 cut(s) 447, 476
BtsI GCAGTG 2 cut(s) 432, 471
BtsIMutI CAGTG 4 cut(s) 409, 432, 471, 583
Cac8I GCNNGC 1 cut(s) 223
CaiI CAGNNNCTG 1 cut(s) 65
CciI TCATGA 2 cut(s) 312, 381
Cfr10I RCCGGY 1 cut(s) 467
Cfr13I GGNCC 2 cut(s) 94, 580
Csp6I GTAC 2 cut(s) 263, 430
CviAII CATG 3 cut(s) 302, 313, 382
CviJI RGCY 7 cut(s) 113, 134, 212, 238, 454, 514, 564
CviKI_1 RGCY 7 cut(s) 113, 134, 212, 238, 454, 514, 564
CviQI GTAC 2 cut(s) 263, 430
DdeI CTNAG 2 cut(s) 234, 594
DpnI GATC 2 cut(s) 508, 599
DpnII GATC 2 cut(s) 506, 597
DraI TTTAAA 1 cut(s) 78
EaeI YGGCCR 2 cut(s) 210, 562
Eam1104I CTCTTC 4 cut(s) 350, 363, 497, 614
EarI CTCTTC 4 cut(s) 350, 363, 497, 614
Ecl136II GAGCTC 1 cut(s) 238
Eco24I GRGCYC 2 cut(s) 240, 516
Eco31I GGTCTC 1 cut(s) 146
Eco47I GGWCC 2 cut(s) 94, 580
Eco53kI GAGCTC 1 cut(s) 238
Eco57I CTGAAG 2 cut(s) 87, 129
Eco88I CYCGRG 2 cut(s) 515, 555
EcoICRI GAGCTC 1 cut(s) 238
EcoT38I GRGCYC 2 cut(s) 240, 516
FaeI CATG 3 cut(s) 305, 316, 385
FalI AAGNNNNNCTT 2 cut(s) 438, 470
FaqI GGGAC 1 cut(s) 523
FatI CATG 3 cut(s) 301, 312, 381
FauI CCCGC 1 cut(s) 550
Fnu4HI GCNGC 1 cut(s) 452
FokI GGATG 2 cut(s) 454, 463
FriOI GRGCYC 2 cut(s) 240, 516
Fsp4HI GCNGC 1 cut(s) 452
FspBI CTAG 1 cut(s) 362
GluI GCNGC 1 cut(s) 452
HaeIII GGCC 2 cut(s) 212, 564
HapII CCGG 1 cut(s) 468
Hin1II CATG 3 cut(s) 305, 316, 385
HinfI GANTC 1 cut(s) 62
HpaII CCGG 1 cut(s) 468
Hpy166II GTNNAC 1 cut(s) 430
Hpy188I TCNGA 3 cut(s) 67, 231, 511
Hpy188III TCNNGA 4 cut(s) 273, 313, 382, 391
Hpy8I GTNNAC 1 cut(s) 430
HpyAV CCTTC 2 cut(s) 316, 490
HpyCH4III ACNGT 3 cut(s) 90, 329, 587
HpyCH4IV ACGT 1 cut(s) 122
HpyCH4V TGCA 4 cut(s) 4, 59, 445, 476
HpyF10VI GCNNNNNNNGC 3 cut(s) 202, 218, 451
HpyF3I CTNAG 2 cut(s) 234, 594
HpySE526I ACGT 1 cut(s) 122
Hsp92II CATG 3 cut(s) 305, 316, 385
Kzo9I GATC 2 cut(s) 506, 597
LguI GCTCTTC 1 cut(s) 363
LpnPI CCDG 7 cut(s) 177, 194, 226, 273, 286, 481, 588
Lsp1109I GCAGC 1 cut(s) 463
LweI GCATC 3 cut(s) 214, 432, 485
MaeI CTAG 1 cut(s) 362
MaeII ACGT 1 cut(s) 122
MalI GATC 2 cut(s) 508, 599
MboI GATC 2 cut(s) 506, 597
MboII GAAGA 5 cut(s) 367, 377, 380, 514, 601
MhlI GDGCHC 3 cut(s) 198, 240, 516
MlsI TGGCCA 2 cut(s) 212, 564
MluCI AATT 2 cut(s) 20, 460
MluNI TGGCCA 2 cut(s) 212, 564
MlyI GAGTC 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 3 cut(s) 112, 331, 571
Mox20I TGGCCA 2 cut(s) 212, 564
MscI TGGCCA 2 cut(s) 212, 564
MseI TTAA 2 cut(s) 77, 419
Msp20I TGGCCA 2 cut(s) 212, 564
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 1 cut(s) 468
MvnI CGCG 1 cut(s) 545
MwoI GCNNNNNNNGC 3 cut(s) 202, 218, 451
NdeII GATC 2 cut(s) 506, 597
NlaIII CATG 3 cut(s) 305, 316, 385
NspV TTCGAA 1 cut(s) 24
PagI TCATGA 2 cut(s) 312, 381
PciSI GCTCTTC 1 cut(s) 363
PkrI GCNGC 1 cut(s) 453
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
Psp124BI GAGCTC 1 cut(s) 240
PspPI GGNCC 2 cut(s) 94, 580
PstNI CAGNNNCTG 1 cut(s) 65
RsaI GTAC 2 cut(s) 264, 431
RsaNI GTAC 2 cut(s) 263, 430
SacI GAGCTC 1 cut(s) 240
SapI GCTCTTC 1 cut(s) 363
SaqAI TTAA 2 cut(s) 77, 419
SatI GCNGC 1 cut(s) 452
Sau3AI GATC 2 cut(s) 506, 597
Sau96I GGNCC 2 cut(s) 94, 580
ScaI AGTACT 1 cut(s) 264
SchI GAGTC 1 cut(s) 56
SduI GDGCHC 3 cut(s) 198, 240, 516
SetI ASST 5 cut(s) 115, 125, 174, 240, 456
SfaNI GCATC 3 cut(s) 214, 432, 485
SfuI TTCGAA 1 cut(s) 24
SinI GGWCC 2 cut(s) 94, 580
SmlI CTYRAG 2 cut(s) 185, 239
SmoI CTYRAG 2 cut(s) 185, 239
Sse9I AATT 2 cut(s) 20, 460
SsiI CCGC 3 cut(s) 105, 182, 543
SspMI CTAG 1 cut(s) 362
SstI GAGCTC 1 cut(s) 240
TaaI ACNGT 3 cut(s) 90, 329, 587
TaiI ACGT 1 cut(s) 125
TaqI TCGA 3 cut(s) 24, 192, 390
TasI AATT 2 cut(s) 20, 460
TatI WGTACW 2 cut(s) 262, 429
Tru1I TTAA 2 cut(s) 77, 419
Tru9I TTAA 2 cut(s) 77, 419
TscAI CASTG 4 cut(s) 409, 432, 478, 590
TseI GCWGC 1 cut(s) 451
TspDTI ATGAA 3 cut(s) 144, 370, 398
TspGWI ACGGA 1 cut(s) 454
TspRI CASTG 4 cut(s) 409, 432, 478, 590
VpaK11BI GGWCC 2 cut(s) 94, 580
XapI RAATTY 1 cut(s) 460
XspI CTAG 1 cut(s) 362
ZrmI AGTACT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.