Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8273449.1

Orthogroup ID

OG0000753

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 821

Gene Structure 821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8273449.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 373 bp

atgtatctctacaactgcttcagtgactgcgcagaggttttggctgcaacagttttgcggaaagtgcaaaccggatggcaggaaaatcatggttttgtcgagtttgcttctcacagtgtggctgagtttgtcttgagctcctacaatggtgagctcatgcccaaccacaataatcggagattttacctgagctgggacactgatggttacggtacaaggtggcgctgggatcctgtttaccagcaatggtctttctttggttatgctgagcacagtggtatgttggatgccaagacagtgatcgagttgtacaaagactgcatacctgttgttactgaaaagccatctggtagtgctcagcaatattcgcaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko03015 ko03040 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map03015 map03040 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

RRM_1

Protein Analysis

124

Amino Acids

14.4

Weight (kDa)

5.21

Isoelectric Point (pI)

44.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000753)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26720 FvH4_7g27001 FvH4_7g27001 FvH4_7g27001 FvH4_7g31210 FvH4_7g31211 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31310 FvH4_7g31320 FvH4_7g31670 FvH4_7g31670 FvH4_7g31681 FvH4_7g31682
rosa_chinensis	RchiOBHm_Chr1g0337091 RchiOBHm_Chr1g0337131 RchiOBHm_Chr1g0380941
rosa_laevigata	RLG00000026258 RLG00000026260 RLG00000026268 RLG00000026269 RLG00000029305
rosa_multiflora	Rmu_co8190652.1_g000001 Rmu_co8273449.1_g000001 Rmu_co8310417.1_g000001 Rmu_sc0002160.1_g000028 Rmu_sc0002160.1_g000031 Rmu_sc0002962.1_g000022 Rmu_sc0004623.1_g000006 Rmu_sc0004623.1_g000007 Rmu_sc0013826.1_g000002 Rmu_sc0013826.1_g000003 Rmu_sc0020974.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105360 Rroxscaffold_4G00314970 Rroxscaffold_6G00413200
rosa_rugosa	Rorug01G0131100 Rorug01G0423200 Rorug01G0424100
rosa_samantha	Rh1AG151800 Rh1AG152100 Rh1AG447500 Rh1AG447600 Rh1AG448600 Rh1AG449500 Rh1AG449700 Rh1BG119600 Rh1BG404200 Rh1BG405400 Rh1CG143000 Rh1CG418300 Rh1DG159000 Rh1DG159300 Rh1DG159400 Rh1DG434600 Rh1DG435500 Rh1DG435900
rosa_wichuraiana	Rw0G005920 Rw0G005960 Rw0G005970 Rw1G012410 Rw1G012420 Rw1G038950 Rw1G039110 Rw1G039170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	31
AciI	CCGC	1 cut(s)	58
AclWI	GGATC	2 cut(s)	224, 237
AcuI	CTGAAG	1 cut(s)	4
AdeI	CACNNNGTG	1 cut(s)	118
AfaI	GTAC	2 cut(s)	214, 311
AfiI	CCNNNNNNNGG	1 cut(s)	193
AluBI	AGCT	3 cut(s)	138, 154, 192
AluI	AGCT	3 cut(s)	138, 154, 192
Alw21I	GWGCWC	4 cut(s)	140, 156, 273, 358
AlwI	GGATC	2 cut(s)	224, 237
AlwNI	CAGNNNCTG	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	44
AspLEI	GCGC	2 cut(s)	32, 225
AsuHPI	GGTGA	1 cut(s)	161
BamHI	GGATCC	1 cut(s)	229
BanII	GRGCYC	2 cut(s)	140, 156
Bbv12I	GWGCWC	4 cut(s)	140, 156, 273, 358
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	3 cut(s)	69, 197, 352
BfoI	RGCGCY	1 cut(s)	226
BisI	GCNGC	1 cut(s)	45
BlpI	GCTNAGC	2 cut(s)	267, 357
BlsI	GCNGC	1 cut(s)	46
BmiI	GGNNCC	1 cut(s)	231
BmsI	GCATC	1 cut(s)	277
Bpu10I	CCTNAGC	1 cut(s)	188
Bpu1102I	GCTNAGC	2 cut(s)	267, 357
BpuEI	CTTGAG	1 cut(s)	154
BsaWI	WCCGGW	1 cut(s)	71
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse3DI	GCAATG	1 cut(s)	251
BseGI	GGATG	2 cut(s)	80, 292
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMI	GCAATG	1 cut(s)	251
BseMII	CTCAG	4 cut(s)	114, 179, 258, 371
BseXI	GCAGC	1 cut(s)	31
BseYI	CCCAGC	2 cut(s)	192, 225
BsiHKAI	GWGCWC	4 cut(s)	140, 156, 273, 358
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	209
Bsp1286I	GDGCHC	4 cut(s)	140, 156, 273, 358
Bsp1407I	TGTACA	1 cut(s)	309
Bsp143I	GATC	2 cut(s)	229, 300
Bsp1720I	GCTNAGC	2 cut(s)	267, 357
BspACI	CCGC	1 cut(s)	58
BspCNI	CTCAG	4 cut(s)	115, 180, 259, 370
BspLI	GGNNCC	1 cut(s)	231
BspPI	GGATC	2 cut(s)	224, 237
BsrDI	GCAATG	1 cut(s)	251
BsrGI	TGTACA	1 cut(s)	309
BssMI	GATC	2 cut(s)	229, 300
Bst4CI	ACNGT	5 cut(s)	52, 116, 212, 275, 298
BstAUI	TGTACA	1 cut(s)	309
BstDEI	CTNAG	4 cut(s)	123, 188, 267, 357
BstF5I	GGATG	2 cut(s)	80, 292
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	2 cut(s)	32, 225
BstKTI	GATC	2 cut(s)	232, 303
BstMBI	GATC	2 cut(s)	229, 300
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 367
BstV1I	GCAGC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BtsCI	GGATG	2 cut(s)	80, 292
BtsIMutI	CAGTG	5 cut(s)	28, 121, 198, 280, 303
CaiI	CAGNNNCTG	1 cut(s)	27
CfoI	GCGC	2 cut(s)	32, 225
Csp6I	GTAC	2 cut(s)	213, 310
CviAII	CATG	2 cut(s)	89, 157
CviJI	RGCY	6 cut(s)	44, 122, 138, 154, 192, 343
CviKI_1	RGCY	6 cut(s)	44, 122, 138, 154, 192, 343
CviQI	GTAC	2 cut(s)	213, 310
DdeI	CTNAG	4 cut(s)	123, 188, 267, 357
DpnI	GATC	2 cut(s)	231, 302
DpnII	GATC	2 cut(s)	229, 300
DraIII	CACNNNGTG	1 cut(s)	118
Ecl136II	GAGCTC	2 cut(s)	138, 154
Eco24I	GRGCYC	2 cut(s)	140, 156
Eco53kI	GAGCTC	2 cut(s)	138, 154
Eco57I	CTGAAG	1 cut(s)	4
EcoICRI	GAGCTC	2 cut(s)	138, 154
EcoT38I	GRGCYC	2 cut(s)	140, 156
FaeI	CATG	2 cut(s)	92, 160
FaiI	YATR	5 cut(s)	90, 158, 264, 281, 323
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	2 cut(s)	88, 156
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	2 cut(s)	87, 299
FriOI	GRGCYC	2 cut(s)	140, 156
Fsp4HI	GCNGC	1 cut(s)	45
FspI	TGCGCA	1 cut(s)	31
GlaI	GCGC	2 cut(s)	31, 224
GluI	GCNGC	1 cut(s)	45
GsaI	CCCAGC	2 cut(s)	196, 229
HaeII	RGCGCY	1 cut(s)	226
HapII	CCGG	1 cut(s)	72
HhaI	GCGC	2 cut(s)	32, 225
Hin1II	CATG	2 cut(s)	92, 160
Hin6I	GCGC	2 cut(s)	30, 223
HinP1I	GCGC	2 cut(s)	30, 223
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	1 cut(s)	177
Hpy188III	TCNNGA	1 cut(s)	133
Hpy8I	GTNNAC	1 cut(s)	238
HpyCH4III	ACNGT	5 cut(s)	52, 116, 212, 275, 298
HpyCH4V	TGCA	3 cut(s)	47, 67, 321
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 367
HpyF3I	CTNAG	4 cut(s)	123, 188, 267, 357
Hsp92II	CATG	2 cut(s)	92, 160
HspAI	GCGC	2 cut(s)	30, 223
Kzo9I	GATC	2 cut(s)	229, 300
LmnI	GCTCC	1 cut(s)	143
LpnPI	CCDG	9 cut(s)	65, 85, 178, 200, 211, 246, 254, 333, 339
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	1 cut(s)	277
MaeIII	GTNAC	3 cut(s)	23, 206, 331
MalI	GATC	2 cut(s)	231, 302
MboI	GATC	2 cut(s)	229, 300
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	4 cut(s)	140, 156, 273, 358
MmeI	TCCRAC	1 cut(s)	264
MnlI	CCTC	1 cut(s)	28
MspI	CCGG	1 cut(s)	72
MwoI	GCNNNNNNNGC	2 cut(s)	64, 367
NdeII	GATC	2 cut(s)	229, 300
NlaIII	CATG	2 cut(s)	92, 160
NlaIV	GGNNCC	1 cut(s)	231
NmuCI	GTSAC	1 cut(s)	23
NsbI	TGCGCA	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	46
Psp124BI	GAGCTC	2 cut(s)	140, 156
PspFI	CCCAGC	2 cut(s)	192, 225
PspN4I	GGNNCC	1 cut(s)	231
PstNI	CAGNNNCTG	1 cut(s)	27
PsuI	RGATCY	1 cut(s)	229
RsaI	GTAC	2 cut(s)	214, 311
RsaNI	GTAC	2 cut(s)	213, 310
SacI	GAGCTC	2 cut(s)	140, 156
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	2 cut(s)	229, 300
SduI	GDGCHC	4 cut(s)	140, 156, 273, 358
SetI	ASST	7 cut(s)	39, 140, 156, 189, 194, 221, 328
SfaNI	GCATC	1 cut(s)	277
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
SsiI	CCGC	1 cut(s)	58
SspI	AATATT	1 cut(s)	365
SstI	GAGCTC	2 cut(s)	140, 156
TaaI	ACNGT	5 cut(s)	52, 116, 212, 275, 298
TaqI	TCGA	2 cut(s)	99, 303
TatI	WGTACW	1 cut(s)	309
TscAI	CASTG	5 cut(s)	28, 121, 205, 280, 303
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	1 cut(s)	44
Tsp45I	GTSAC	1 cut(s)	23
TspRI	CASTG	5 cut(s)	28, 121, 205, 280, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.