Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000753

Physical Location & Seq

Genomic Coordinates Reverse (-)

28798928 .. 28804032

Gene Structure 5105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56505

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGGTTGCTGTGCCTCCGGCTCCCAAATCTTCTTCGCTGGTGGCTTAGCTCCACTACCACTTAGGGAAAGACAATTTCTGCCAAGTGGAGATGTCTATAGTTTTGAACCCAAGTCTATGTTTTGGAAAAAGCATGATTGGAGTTTCCTGAAGGGGAAACCAGACCCCTTGCTTTTTGAGATGAACGGAAATCTCTATTGTCTCGCAGGTAGTCCCCTAGGTTTTTCTCTTGATCGTCCCACTTTCGAGGTATACTATAGCAGTTCTGGTGAATGTGAGGCTTTGCCGTATCCTCCATTTTACCTACTGGAACTAGATCGCACCAAAAACTACAGCGGCCCTTTGGCTGGTCGTGAATTGTGTTATGCTATTGTTGGTACCAAGATCTTGATCTCGAGCAGGCACAACAATGAATCAATCCCTAACTTTCCCATTATGTGTTTTGATGTGAATGAGAAGGAAAAGAAATGGAGAGAGATGACTTCCTTGTTCGATGGTAAGCCGTTTCCCTTCATCAGCAGGGCGGCTTTGGTCTTGGACTTGAACGATGGTACACATGATAAGGTCATGTTTTCCATTCGTGAATATCACGAGATATATGTCTCCCGATTAGTTGTGAATGATGATGGTAGTATATACAACTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko03015 ko03040 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map03015 map03040 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

RRM_1

Protein Analysis

215

Amino Acids

24.43

Weight (kDa)

5.61

Isoelectric Point (pI)

36.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000753)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26720 FvH4_7g27001 FvH4_7g27001 FvH4_7g27001 FvH4_7g31210 FvH4_7g31211 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31310 FvH4_7g31320 FvH4_7g31670 FvH4_7g31670 FvH4_7g31681 FvH4_7g31682
rosa_chinensis	RchiOBHm_Chr1g0337091 RchiOBHm_Chr1g0337131 RchiOBHm_Chr1g0380941
rosa_laevigata	RLG00000026258 RLG00000026260 RLG00000026268 RLG00000026269 RLG00000029305
rosa_multiflora	Rmu_co8190652.1_g000001 Rmu_co8273449.1_g000001 Rmu_co8310417.1_g000001 Rmu_sc0002160.1_g000028 Rmu_sc0002160.1_g000031 Rmu_sc0002962.1_g000022 Rmu_sc0004623.1_g000006 Rmu_sc0004623.1_g000007 Rmu_sc0013826.1_g000002 Rmu_sc0013826.1_g000003 Rmu_sc0020974.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105360 Rroxscaffold_4G00314970 Rroxscaffold_6G00413200
rosa_rugosa	Rorug01G0131100 Rorug01G0423200 Rorug01G0424100
rosa_samantha	Rh1AG151800 Rh1AG152100 Rh1AG447500 Rh1AG447600 Rh1AG448600 Rh1AG449500 Rh1AG449700 Rh1BG119600 Rh1BG404200 Rh1BG405400 Rh1CG143000 Rh1CG418300 Rh1DG159000 Rh1DG159300 Rh1DG159400 Rh1DG434600 Rh1DG435500 Rh1DG435900
rosa_wichuraiana	Rw0G005920 Rw0G005960 Rw0G005970 Rw1G012410 Rw1G012420 Rw1G038950 Rw1G039110 Rw1G039170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	197
Acc65I	GGTACC	1 cut(s)	377
AccB1I	GGYRCC	1 cut(s)	377
AccI	GTMKAC	1 cut(s)	252
AciI	CCGC	2 cut(s)	336, 524
AcuI	CTGAAG	1 cut(s)	170
AfaI	GTAC	2 cut(s)	379, 553
AfiI	CCNNNNNNNGG	1 cut(s)	347
AgsI	TTSAA	2 cut(s)	107, 544
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
Alw26I	GTCTC	2 cut(s)	206, 607
Ama87I	CYCGRG	1 cut(s)	394
AoxI	GGCC	1 cut(s)	337
Asp718I	GGTACC	1 cut(s)	377
AspA2I	CCTAGG	1 cut(s)	217
AspS9I	GGNCC	1 cut(s)	338
AsuHPI	GGTGA	1 cut(s)	281
AvaI	CYCGRG	1 cut(s)	394
AvrII	CCTAGG	1 cut(s)	217
BanI	GGYRCC	1 cut(s)	377
BauI	CACGAG	1 cut(s)	590
BccI	CCATC	3 cut(s)	488, 542, 620
BceAI	ACGGC	2 cut(s)	271, 487
BciVI	GTATCC	1 cut(s)	300
BcoDI	GTCTC	2 cut(s)	206, 607
BfaI	CTAG	2 cut(s)	218, 314
BfmI	CTRYAG	3 cut(s)	97, 256, 331
BfuAI	ACCTGC	1 cut(s)	197
BfuI	GTATCC	1 cut(s)	300
BglII	AGATCT	1 cut(s)	384
BisI	GCNGC	2 cut(s)	337, 525
BlnI	CCTAGG	1 cut(s)	217
BlpI	GCTNAGC	1 cut(s)	46
BlsI	GCNGC	2 cut(s)	338, 526
BmeT110I	CYCGRG	1 cut(s)	394
BmgT120I	GGNCC	1 cut(s)	338
BmiI	GGNNCC	2 cut(s)	22, 379
Bpu1102I	GCTNAGC	1 cut(s)	46
BsaBI	GATNNNNATC	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
Bse1I	ACTGG	1 cut(s)	312
Bse8I	GATNNNNATC	1 cut(s)	389
BseDI	CCNNGG	1 cut(s)	217
BseJI	GATNNNNATC	1 cut(s)	389
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseNI	ACTGG	1 cut(s)	312
BshFI	GGCC	1 cut(s)	339
BshNI	GGYRCC	1 cut(s)	377
BsiHKCI	CYCGRG	1 cut(s)	394
BsiSI	CCGG	1 cut(s)	18
BslFI	GGGAC	2 cut(s)	198, 222
BslI	CCNNNNNNNGG	1 cut(s)	347
BsmAI	GTCTC	2 cut(s)	206, 607
BsmFI	GGGAC	2 cut(s)	198, 222
BsnI	GGCC	1 cut(s)	339
BsoBI	CYCGRG	1 cut(s)	394
Bsp143I	GATC	4 cut(s)	232, 316, 384, 390
Bsp1720I	GCTNAGC	1 cut(s)	46
BspACI	CCGC	2 cut(s)	336, 524
BspANI	GGCC	1 cut(s)	339
BspLI	GGNNCC	2 cut(s)	22, 379
BspMI	ACCTGC	1 cut(s)	197
BspT107I	GGYRCC	1 cut(s)	377
BsrI	ACTGG	1 cut(s)	312
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	4 cut(s)	232, 316, 384, 390
BssNAI	GTATAC	1 cut(s)	253
BssSI	CACGAG	1 cut(s)	590
BssT1I	CCWWGG	1 cut(s)	217
Bst1107I	GTATAC	1 cut(s)	253
Bst2BI	CACGAG	1 cut(s)	590
BstC8I	GCNNGC	1 cut(s)	401
BstDEI	CTNAG	3 cut(s)	46, 62, 645
BstKTI	GATC	4 cut(s)	235, 319, 387, 393
BstMAI	GTCTC	2 cut(s)	206, 607
BstMBI	GATC	4 cut(s)	232, 316, 384, 390
BstSFI	CTRYAG	3 cut(s)	97, 256, 331
BstX2I	RGATCY	1 cut(s)	384
BstYI	RGATCY	1 cut(s)	384
BstZ17I	GTATAC	1 cut(s)	253
BsuI	GTATCC	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	339
BveI	ACCTGC	1 cut(s)	197
Cac8I	GCNNGC	1 cut(s)	401
Cfr13I	GGNCC	1 cut(s)	338
Csp6I	GTAC	2 cut(s)	378, 552
CviAII	CATG	3 cut(s)	134, 557, 568
CviJI	RGCY	8 cut(s)	21, 45, 50, 281, 339, 347, 502, 527
CviKI_1	RGCY	8 cut(s)	21, 45, 50, 281, 339, 347, 502, 527
CviQI	GTAC	2 cut(s)	378, 552
DdeI	CTNAG	3 cut(s)	46, 62, 645
DpnI	GATC	4 cut(s)	234, 318, 386, 392
DpnII	GATC	4 cut(s)	232, 316, 384, 390
Eco130I	CCWWGG	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	170
Eco88I	CYCGRG	1 cut(s)	394
EcoT14I	CCWWGG	1 cut(s)	217
ErhI	CCWWGG	1 cut(s)	217
FaeI	CATG	3 cut(s)	137, 560, 571
FaqI	GGGAC	2 cut(s)	198, 222
FatI	CATG	3 cut(s)	133, 556, 567
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	2 cut(s)	337, 525
Fsp4HI	GCNGC	2 cut(s)	337, 525
FspBI	CTAG	2 cut(s)	218, 314
GluI	GCNGC	2 cut(s)	337, 525
HaeIII	GGCC	1 cut(s)	339
HapII	CCGG	1 cut(s)	18
Hin1II	CATG	3 cut(s)	137, 560, 571
HinfI	GANTC	1 cut(s)	413
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	1 cut(s)	281
Hpy166II	GTNNAC	2 cut(s)	253, 554
Hpy188III	TCNNGA	8 cut(s)	148, 230, 353, 388, 394, 581, 590, 606
Hpy8I	GTNNAC	2 cut(s)	253, 554
HpyAV	CCTTC	3 cut(s)	145, 451, 520
HpyF3I	CTNAG	3 cut(s)	46, 62, 645
Hsp92II	CATG	3 cut(s)	137, 560, 571
KpnI	GGTACC	1 cut(s)	381
Kzo9I	GATC	4 cut(s)	232, 316, 384, 390
LmnI	GCTCC	2 cut(s)	26, 55
MaeI	CTAG	2 cut(s)	218, 314
MalI	GATC	4 cut(s)	234, 318, 386, 392
MboI	GATC	4 cut(s)	232, 316, 384, 390
MboII	GAAGA	2 cut(s)	22, 25
MflI	RGATCY	1 cut(s)	384
MluCI	AATT	2 cut(s)	74, 356
MnlI	CCTC	4 cut(s)	25, 241, 271, 303
MslI	CAYNNNNRTG	1 cut(s)	408
MspA1I	CMGCKG	1 cut(s)	336
MspI	CCGG	1 cut(s)	18
NdeII	GATC	4 cut(s)	232, 316, 384, 390
NlaIII	CATG	3 cut(s)	137, 560, 571
NlaIV	GGNNCC	2 cut(s)	22, 379
PaeR7I	CTCGAG	1 cut(s)	394
PfeI	GAWTC	1 cut(s)	413
PkrI	GCNGC	2 cut(s)	338, 526
PspN4I	GGNNCC	2 cut(s)	22, 379
PspPI	GGNCC	1 cut(s)	338
PsuI	RGATCY	1 cut(s)	384
RsaI	GTAC	2 cut(s)	379, 553
RsaNI	GTAC	2 cut(s)	378, 552
RseI	CAYNNNNRTG	1 cut(s)	408
SatI	GCNGC	2 cut(s)	337, 525
Sau3AI	GATC	4 cut(s)	232, 316, 384, 390
Sau96I	GGNCC	1 cut(s)	338
SetI	ASST	6 cut(s)	52, 211, 223, 252, 306, 567
SfcI	CTRYAG	3 cut(s)	97, 256, 331
Sfr274I	CTCGAG	1 cut(s)	394
SlaI	CTCGAG	1 cut(s)	394
SmiMI	CAYNNNNRTG	1 cut(s)	408
SmlI	CTYRAG	1 cut(s)	394
SmoI	CTYRAG	1 cut(s)	394
Sse9I	AATT	2 cut(s)	74, 356
SsiI	CCGC	2 cut(s)	336, 524
SspMI	CTAG	2 cut(s)	218, 314
StyI	CCWWGG	1 cut(s)	217
TaqI	TCGA	3 cut(s)	246, 395, 492
TasI	AATT	2 cut(s)	74, 356
TauI	GCSGC	2 cut(s)	339, 527
TfiI	GAWTC	1 cut(s)	413
TspDTI	ATGAA	3 cut(s)	197, 426, 502
TspGWI	ACGGA	1 cut(s)	201
XhoI	CTCGAG	1 cut(s)	394
XmaJI	CCTAGG	1 cut(s)	217
XmiI	GTMKAC	1 cut(s)	252
XspI	CTAG	2 cut(s)	218, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.