Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001412

Physical Location & Seq

Genomic Coordinates Reverse (-)

31703339 .. 31707564

Gene Structure 4226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1227200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1764 bp

ATGGGACTTTGCTGCAGCAAGAACGTCGCCGTTTCCGAGGCCGACAACAAGCCCGCAGCCGCGCAACAGTCAAAACACTCGCCAGTGGCACCGGTGCCGCCCAGCTCCAGACCCGGCGATGCTCACTCCGGAAAGCACACTCCGGCCAACTCCTTCTCGGCCAGTCCGTGCCCGAGCCCGCTTCCCGCCGGAATTGCGCCGTCGCCGGCGAGGACACCGGGGAGGAAGTTCAGGTGGCCCTTACCTCCTCCGTCTCCGGCGAAACCGATCATGGAGGCGCTTCGACGGCGGCAAGGGCGTGAGGTGAAGCCGAAGGATGGGCCGATACCGGAGGAGCATCCAGGGGGCGTGGAAGGCGAGGGAGGAGAGAGAGCACTGGACAAGAGCTTTGGGTATGGGAAGAACATTGGGGCAAAGTTTGAGCTAGGGAAGGAGGTGGGTCGAGGGCATTTTGGTCATACTTGCTGGGCCAAGGGGAAGAAAGGAGAGCTCAAAGGACAGCCGGTCGCCGTCAAGATCATAGCCAAAGCGAAGATGACAACGGCAATAGCTATTGAAGATGTTCGCAGAGAGGTGAAAATACTGAAAGCATTAGCTGGACATAAGAATCTGGTCAGATTTTACGATGCATTTGAGGATGACCATAACGTCTACATTGTCATGGAGTTGTGTGAAGGTGGAGAACTACTGGATAAAATTTTGTCAAGGGGTGGAAGATACACAGAAAAGGATGCTAAAACTATTGTTGTGCAAATTTTAAGCGTTGTTTCCTTCTGTCATCTCCAAGGTGTCGTACACCGTGATCTAAAGCCAGAGGAAGAATGCTTTTCAGAGATGAGGATGAAGGTTATTGATTTTGGTCTTTCTGACCTTATTAGGCCTGATCAACGTCTCAATGATATTGTTGGAAGTGCGTACTATGTTGCACCTGAGGTGTTATATAGATCTTACAGTCTCGAAGCAGATATGTGGAGTGTTGGTGTCATAACATATATATTGCTATGTGGAAGTAGACCTTTCTGGGCACGAACTGAATCAGGAATCTTTCGTTCAGTGCTAAGAGCTGATCCTAATTTTGATGATTCTCCTTGGCCTTCAGTCTCCTCAGAAGCCAAAGATTTTCTTAAAAGGCTTCTGAATAAGGACCACAGGAAAAGAATGACTGCTGCCCAAGCTTTAACTCACCCATGGTTACGAGATGAAAAACATGATGTGCCTTTAGATATTTTAATCTACAAGTTGGTTAAATCGTATGTTCGGTCCTCACCCTTCAAGCGTGCAGCACTAAAGGCTCTCTCCAAGGCTTTAACAGAAGACGAGCTCTTCTATCTTAGGGCTCAATTTAGGCTCTTGGGTCCAAAAAATGGACGTGTTTCCCTTGATAATTTCAGAACGGCCCTCATGAAAAATTCAACTGATGCCATGAAGATGTCAAGGGTTTATGACATTATAAATTTGATGGAACCCCTCTCACACAAGAAATTGGACTTCGAAGAGTTCTGCGTCGCTGCAATAAGTTCATATCAGCTAGAAGCTCATGAAGGATGGGAGAAGATTGCAAGTACGGCGTTTGAGCATTTCGAAAATGAAGGAAACCGGGTCATCTCTGTTGAGGAGTTGGCACAGGAAATGAATCTTGGTCCTACATCTTATCAATTACTCAATGACTGGATCCGACCTTCAGACAGAAAACTTACGCTCCTTGGATACACCAAATTTTTGCATGGTGTGACAGTGCGTAGTTCCAATCCTAGACGTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

588

Amino Acids

65.63

Weight (kDa)

9.16

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	140 - 398	9.4e-69	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	141 - 391	2.1e-31	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49370 AT5G24430
fragaria_vesca	FvH4_7g32610 FvH4_7g32610
malus_domestica	MD01G1227200.v1.1 MD07G1297500.v1.1
prunus_persica	Prupe.2G317200_v2.0.a1 Prupe.2G317200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0382501 RchiOBHm_Chr2g0138551 RchiOBHm_Chr2g0138561 RchiOBHm_Chr2g0161821 RchiOBHm_Chr6g0303421
rosa_laevigata	RLG00000007574 RLG00000010752 RLG00000023924 RLG00000026171 RLG00000031079 RLG00000034979 RLG00000035703 RLG00000036307
rosa_multiflora	Rmu_sc0000110.1_g000053 Rmu_sc0000110.1_g000055 Rmu_sc0003696.1_g000002 Rmu_sc0029402.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111900 Rroxscaffold_4G00278000 Rroxscaffold_7G00202700
rosa_rugosa	Rorug01G0435000
rosa_samantha	Rh1AG262900 Rh1AG460000 Rh1BG182300 Rh1BG416200 Rh1CG430000 Rh1DG212400 Rh1DG448600 Rh2AG553600 Rh2BG637900 Rh4AG140900 Rh4CG147700 Rh4CG147800 Rh5CG368300 Rh5CG374200 Rh6AG435500 Rh6CG169600 Rh6CG190900 Rh6DG161600 Rh7BG358800 Rh7CG197800 Rh7CG451800
rosa_wichuraiana	Rw1G001490 Rw1G041160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1451
AasI	GACNNNNNNGTC	1 cut(s)	647
AatII	GACGTC	1 cut(s)	1759
AccB1I	GGYRCC	2 cut(s)	88, 94
AccB7I	CCANNNNNTGG	1 cut(s)	1364
AccI	GTMKAC	2 cut(s)	651, 1012
AccII	CGCG	1 cut(s)	62
AccIII	TCCGGA	1 cut(s)	128
AciI	CCGC	6 cut(s)	54, 60, 98, 179, 186, 289
AclWI	GGATC	3 cut(s)	1061, 1666, 1679
AcoI	YGGCCR	2 cut(s)	144, 159
AcsI	RAATTY	5 cut(s)	696, 753, 1408, 1453, 1715
AcuI	CTGAAG	2 cut(s)	1080, 1665
AcyI	GRCGYC	1 cut(s)	1756
AfaI	GTAC	3 cut(s)	795, 917, 1564
AfiI	CCNNNNNNNGG	2 cut(s)	317, 1364
AflIII	ACRYGT	1 cut(s)	1369
AgeI	ACCGGT	1 cut(s)	91
AgsI	TTSAA	3 cut(s)	557, 1273, 1413
AhdI	GACNNNNNGTC	1 cut(s)	503
AjiI	CACGTC	1 cut(s)	1370
AjnI	CCWGG	1 cut(s)	340
AjuI	GAANNNNNNNTTGG	2 cut(s)	1620, 1652
Alw21I	GWGCWC	3 cut(s)	376, 492, 1323
Alw26I	GTCTC	4 cut(s)	258, 896, 959, 1105
AlwI	GGATC	3 cut(s)	1061, 1666, 1679
Ama87I	CYCGRG	1 cut(s)	172
Aor13HI	TCCGGA	1 cut(s)	128
AoxI	GGCC	9 cut(s)	39, 144, 159, 236, 320, 468, 878, 1091, 1395
ApeKI	GCWGC	6 cut(s)	12, 15, 56, 1166, 1280, 1508
ApoI	RAATTY	5 cut(s)	696, 753, 1408, 1453, 1715
ArsI	GACNNNNNNTTYG	2 cut(s)	371, 403
AsiGI	ACCGGT	1 cut(s)	91
Asp700I	GAANNNNTTC	1 cut(s)	561
AspLEI	GCGC	3 cut(s)	64, 199, 280
AspS9I	GGNCC	8 cut(s)	237, 320, 468, 1144, 1260, 1355, 1396, 1640
AsuC2I	CCSGG	3 cut(s)	114, 219, 1598
AsuHPI	GGTGA	4 cut(s)	316, 586, 1175, 1257
AsuII	TTCGAA	2 cut(s)	1491, 1581
AvaI	CYCGRG	1 cut(s)	172
AvaII	GGWCC	4 cut(s)	1144, 1260, 1355, 1640
AxyI	CCTNAGG	1 cut(s)	930
BaeGI	GKGCMC	2 cut(s)	173, 1027
BamHI	GGATCC	1 cut(s)	1671
BanI	GGYRCC	2 cut(s)	88, 94
BanII	GRGCYC	4 cut(s)	179, 492, 1323, 1339
BbsI	GAAGAC	1 cut(s)	1320
Bbv12I	GWGCWC	3 cut(s)	376, 492, 1323
BbvI	GCAGC	5 cut(s)	27, 68, 1153, 1292, 1495
BccI	CCATC	3 cut(s)	311, 1453, 1539
BceAI	ACGGC	7 cut(s)	14, 184, 302, 494, 558, 1410, 1581
BcgI	CGANNNNNNTGC	2 cut(s)	7, 41
BciT130I	CCWGG	1 cut(s)	342
BciVI	GTATCC	1 cut(s)	1700
BclI	TGATCA	1 cut(s)	883
BcnI	CCSGG	3 cut(s)	114, 219, 1598
BcoDI	GTCTC	4 cut(s)	258, 896, 959, 1105
BfaI	CTAG	3 cut(s)	425, 1529, 1752
BfmI	CTRYAG	1 cut(s)	13
BfoI	RGCGCY	1 cut(s)	281
BfuI	GTATCC	1 cut(s)	1700
BglII	AGATCT	1 cut(s)	944
BisI	GCNGC	9 cut(s)	13, 16, 57, 60, 98, 290, 1167, 1281, 1509
BlsI	GCNGC	9 cut(s)	14, 17, 58, 61, 99, 291, 1168, 1282, 1510
Bme1390I	CCNGG	4 cut(s)	114, 219, 342, 1598
Bme18I	GGWCC	4 cut(s)	1144, 1260, 1355, 1640
BmeRI	GACNNNNNGTC	1 cut(s)	503
BmeT110I	CYCGRG	1 cut(s)	172
BmgBI	CACGTC	1 cut(s)	1370
BmgT120I	GGNCC	8 cut(s)	237, 320, 468, 1144, 1260, 1355, 1396, 1640
BmiI	GGNNCC	5 cut(s)	90, 96, 1356, 1464, 1673
BmrFI	CCNGG	4 cut(s)	114, 219, 342, 1598
BmsI	GCATC	5 cut(s)	109, 346, 616, 721, 1408
BpiI	GAAGAC	1 cut(s)	1320
BpmI	CTGGAG	1 cut(s)	91
Bpu14I	TTCGAA	2 cut(s)	1491, 1581
BpuMI	CCSGG	3 cut(s)	114, 219, 1598
BsaHI	GRCGYC	1 cut(s)	1756
BsaJI	CCNNGG	9 cut(s)	36, 218, 341, 471, 784, 1088, 1187, 1299, 1702
BsaWI	WCCGGW	3 cut(s)	91, 128, 328
BsaXI	ACNNNNNCTCC	4 cut(s)	964, 994, 1683, 1713
Bsc4I	CCNNNNNNNGG	2 cut(s)	317, 1364
Bse118I	RCCGGY	3 cut(s)	91, 205, 502
Bse1I	ACTGG	5 cut(s)	83, 162, 381, 693, 1673
Bse21I	CCTNAGG	1 cut(s)	930
BseAI	TCCGGA	1 cut(s)	128
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	9 cut(s)	36, 218, 341, 471, 784, 1088, 1187, 1299, 1702
BseGI	GGATG	6 cut(s)	322, 337, 643, 736, 846, 1550
BseLI	CCNNNNNNNGG	2 cut(s)	317, 1364
BseMII	CTCAG	2 cut(s)	921, 1119
BseNI	ACTGG	5 cut(s)	83, 162, 381, 693, 1673
BseRI	GAGGAG	5 cut(s)	237, 347, 378, 1093, 1628
BseSI	GKGCMC	2 cut(s)	173, 1027
BseXI	GCAGC	5 cut(s)	27, 68, 1153, 1292, 1495
BseYI	CCCAGC	2 cut(s)	101, 465
BsgI	GTGCAG	1 cut(s)	1299
Bsh1236I	CGCG	1 cut(s)	62
Bsh1285I	CGRYCG	1 cut(s)	507
BshFI	GGCC	9 cut(s)	41, 146, 161, 238, 322, 470, 880, 1093, 1397
BshNI	GGYRCC	2 cut(s)	88, 94
BshTI	ACCGGT	1 cut(s)	91
BsiEI	CGRYCG	1 cut(s)	507
BsiHKAI	GWGCWC	3 cut(s)	376, 492, 1323
BsiHKCI	CYCGRG	1 cut(s)	172
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	317, 1364
BsmAI	GTCTC	4 cut(s)	258, 896, 959, 1105
BsmBI	CGTCTC	2 cut(s)	258, 896
BsmFI	GGGAC	1 cut(s)	18
BsmI	GAATGC	1 cut(s)	827
BsnI	GGCC	9 cut(s)	41, 146, 161, 238, 322, 470, 880, 1093, 1397
BsoBI	CYCGRG	1 cut(s)	172
Bsp119I	TTCGAA	2 cut(s)	1491, 1581
Bsp1286I	GDGCHC	7 cut(s)	173, 179, 376, 492, 1027, 1323, 1339
Bsp13I	TCCGGA	1 cut(s)	128
Bsp143I	GATC	7 cut(s)	267, 516, 802, 883, 944, 1066, 1671
Bsp19I	CCATGG	1 cut(s)	1187
BspACI	CCGC	6 cut(s)	54, 60, 98, 179, 186, 289
BspANI	GGCC	9 cut(s)	41, 146, 161, 238, 322, 470, 880, 1093, 1397
BspCNI	CTCAG	2 cut(s)	922, 1118
BspEI	TCCGGA	1 cut(s)	128
BspFNI	CGCG	1 cut(s)	62
BspHI	TCATGA	2 cut(s)	1401, 1537
BspLI	GGNNCC	5 cut(s)	90, 96, 1356, 1464, 1673
BspMAI	CTGCAG	1 cut(s)	17
BspPI	GGATC	3 cut(s)	1061, 1666, 1679
BspQI	GCTCTTC	1 cut(s)	1328
BspT104I	TTCGAA	2 cut(s)	1491, 1581
BspT107I	GGYRCC	2 cut(s)	88, 94
BsrFI	RCCGGY	3 cut(s)	91, 205, 502
BsrI	ACTGG	5 cut(s)	83, 162, 381, 693, 1673
BssAI	RCCGGY	3 cut(s)	91, 205, 502
BssECI	CCNNGG	9 cut(s)	36, 218, 341, 471, 784, 1088, 1187, 1299, 1702
BssMI	GATC	7 cut(s)	267, 516, 802, 883, 944, 1066, 1671
BssNI	GRCGYC	1 cut(s)	1756
BssT1I	CCWWGG	6 cut(s)	471, 784, 1088, 1187, 1299, 1702
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	4 cut(s)	69, 800, 953, 1735
Bst6I	CTCTTC	2 cut(s)	1328, 1488
BstACI	GRCGYC	1 cut(s)	1756
BstBI	TTCGAA	2 cut(s)	1491, 1581
BstC8I	GCNNGC	4 cut(s)	54, 179, 207, 1278
BstDEI	CTNAG	4 cut(s)	930, 1058, 1105, 1331
BstDSI	CCRYGG	1 cut(s)	1187
BstF5I	GGATG	6 cut(s)	322, 337, 643, 736, 846, 1550
BstFNI	CGCG	1 cut(s)	62
BstH2I	RGCGCY	1 cut(s)	281
BstHHI	GCGC	3 cut(s)	64, 199, 280
BstKTI	GATC	7 cut(s)	270, 519, 805, 886, 947, 1069, 1674
BstMAI	GTCTC	4 cut(s)	258, 896, 959, 1105
BstMBI	GATC	7 cut(s)	267, 516, 802, 883, 944, 1066, 1671
BstMCI	CGRYCG	1 cut(s)	507
BstMWI	GCNNNNNNNGC	7 cut(s)	194, 286, 295, 354, 1172, 1289, 1565
BstNI	CCWGG	1 cut(s)	342
BstSCI	CCNGG	4 cut(s)	112, 217, 340, 1596
BstSFI	CTRYAG	1 cut(s)	13
BstSLI	GKGCMC	2 cut(s)	173, 1027
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	5 cut(s)	27, 68, 1153, 1292, 1495
BstV2I	GAAGAC	1 cut(s)	1320
BstX2I	RGATCY	2 cut(s)	944, 1671
BstYI	RGATCY	2 cut(s)	944, 1671
Bsu36I	CCTNAGG	1 cut(s)	930
BsuI	GTATCC	1 cut(s)	1700
BsuRI	GGCC	9 cut(s)	41, 146, 161, 238, 322, 470, 880, 1093, 1397
BtgI	CCRYGG	1 cut(s)	1187
BtgZI	GCGATG	1 cut(s)	132
BtrI	CACGTC	1 cut(s)	1370
BtsCI	GGATG	6 cut(s)	322, 337, 643, 736, 846, 1550
BtsIMutI	CAGTG	4 cut(s)	90, 374, 1059, 1740
Cac8I	GCNNGC	4 cut(s)	54, 179, 207, 1278
CciI	TCATGA	2 cut(s)	1401, 1537
CfoI	GCGC	3 cut(s)	64, 199, 280
Cfr10I	RCCGGY	3 cut(s)	91, 205, 502
Cfr13I	GGNCC	8 cut(s)	237, 320, 468, 1144, 1260, 1355, 1396, 1640
CseI	GACGC	1 cut(s)	1492
Csp6I	GTAC	3 cut(s)	794, 916, 1563
CspAI	ACCGGT	1 cut(s)	91
CviAII	CATG	8 cut(s)	271, 661, 1188, 1208, 1402, 1423, 1538, 1724
CviQI	GTAC	3 cut(s)	794, 916, 1563
DdeI	CTNAG	4 cut(s)	930, 1058, 1105, 1331
DpnI	GATC	7 cut(s)	269, 518, 804, 885, 946, 1068, 1673
DpnII	GATC	7 cut(s)	267, 516, 802, 883, 944, 1066, 1671
DrdI	GACNNNNNNGTC	1 cut(s)	647
DriI	GACNNNNNGTC	1 cut(s)	503
DseDI	GACNNNNNNGTC	1 cut(s)	647
EaeI	YGGCCR	2 cut(s)	144, 159
Eam1104I	CTCTTC	2 cut(s)	1328, 1488
Eam1105I	GACNNNNNGTC	1 cut(s)	503
EarI	CTCTTC	2 cut(s)	1328, 1488
Ecl136II	GAGCTC	2 cut(s)	490, 1321
Eco130I	CCWWGG	6 cut(s)	471, 784, 1088, 1187, 1299, 1702
Eco147I	AGGCCT	1 cut(s)	880
Eco24I	GRGCYC	4 cut(s)	179, 492, 1323, 1339
Eco47I	GGWCC	4 cut(s)	1144, 1260, 1355, 1640
Eco53kI	GAGCTC	2 cut(s)	490, 1321
Eco57I	CTGAAG	2 cut(s)	1080, 1665
Eco81I	CCTNAGG	1 cut(s)	930
Eco88I	CYCGRG	1 cut(s)	172
EcoICRI	GAGCTC	2 cut(s)	490, 1321
EcoRII	CCWGG	1 cut(s)	340
EcoT14I	CCWWGG	6 cut(s)	471, 784, 1088, 1187, 1299, 1702
EcoT22I	ATGCAT	1 cut(s)	631
EcoT38I	GRGCYC	4 cut(s)	179, 492, 1323, 1339
ErhI	CCWWGG	6 cut(s)	471, 784, 1088, 1187, 1299, 1702
Esp3I	CGTCTC	2 cut(s)	258, 896
FaeI	CATG	8 cut(s)	274, 664, 1191, 1211, 1405, 1426, 1541, 1727
FalI	AAGNNNNNCTT	4 cut(s)	1000, 1032, 1107, 1139
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	8 cut(s)	270, 660, 1187, 1207, 1401, 1422, 1537, 1723
FauI	CCCGC	3 cut(s)	61, 186, 193
FbaI	TGATCA	1 cut(s)	883
FblI	GTMKAC	2 cut(s)	651, 1012
Fnu4HI	GCNGC	9 cut(s)	13, 16, 57, 60, 98, 290, 1167, 1281, 1509
FokI	GGATG	6 cut(s)	324, 329, 650, 743, 853, 1557
FriOI	GRGCYC	4 cut(s)	179, 492, 1323, 1339
Fsp4HI	GCNGC	9 cut(s)	13, 16, 57, 60, 98, 290, 1167, 1281, 1509
FspBI	CTAG	3 cut(s)	425, 1529, 1752
GlaI	GCGC	3 cut(s)	63, 198, 279
GluI	GCNGC	9 cut(s)	13, 16, 57, 60, 98, 290, 1167, 1281, 1509
GsaI	CCCAGC	2 cut(s)	105, 469
GsuI	CTGGAG	1 cut(s)	91
HaeII	RGCGCY	1 cut(s)	281
HaeIII	GGCC	9 cut(s)	41, 146, 161, 238, 322, 470, 880, 1093, 1397
HgaI	GACGC	1 cut(s)	1492
HhaI	GCGC	3 cut(s)	64, 199, 280
Hin1I	GRCGYC	1 cut(s)	1756
Hin1II	CATG	8 cut(s)	274, 664, 1191, 1211, 1405, 1426, 1541, 1727
Hin6I	GCGC	3 cut(s)	62, 197, 278
HinP1I	GCGC	3 cut(s)	62, 197, 278
HindIII	AAGCTT	1 cut(s)	1173
HinfI	GANTC	5 cut(s)	607, 1034, 1041, 1082, 1633
HphI	GGTGA	4 cut(s)	316, 586, 1175, 1257
Hpy166II	GTNNAC	3 cut(s)	652, 796, 1013
Hpy188I	TCNGA	9 cut(s)	37, 617, 832, 868, 1108, 1137, 1391, 1676, 1684
Hpy188III	TCNNGA	7 cut(s)	108, 129, 514, 956, 1038, 1402, 1538
Hpy8I	GTNNAC	3 cut(s)	652, 796, 1013
Hpy99I	CGWCG	4 cut(s)	29, 205, 288, 1508
HpyCH4III	ACNGT	4 cut(s)	69, 800, 953, 1735
HpyCH4IV	ACGT	5 cut(s)	24, 648, 889, 1369, 1756
HpyCH4V	TGCA	8 cut(s)	15, 629, 751, 926, 1280, 1511, 1559, 1723
HpyF10VI	GCNNNNNNNGC	7 cut(s)	194, 286, 295, 354, 1172, 1289, 1565
HpyF3I	CTNAG	4 cut(s)	930, 1058, 1105, 1331
HpySE526I	ACGT	5 cut(s)	24, 648, 889, 1369, 1756
Hsp92I	GRCGYC	1 cut(s)	1756
Hsp92II	CATG	8 cut(s)	274, 664, 1191, 1211, 1405, 1426, 1541, 1727
HspAI	GCGC	3 cut(s)	62, 197, 278
Kpn2I	TCCGGA	1 cut(s)	128
KroI	GCCGGC	1 cut(s)	205
KroNI	GCCGGC	1 cut(s)	207
Ksp22I	TGATCA	1 cut(s)	883
Kzo9I	GATC	7 cut(s)	267, 516, 802, 883, 944, 1066, 1671
LguI	GCTCTTC	1 cut(s)	1328
LmnI	GCTCC	3 cut(s)	110, 334, 1704
Lsp1109I	GCAGC	5 cut(s)	27, 68, 1153, 1292, 1495
LweI	GCATC	5 cut(s)	109, 346, 616, 721, 1408
MaeI	CTAG	3 cut(s)	425, 1529, 1752
MaeII	ACGT	5 cut(s)	24, 648, 889, 1369, 1756
MaeIII	GTNAC	2 cut(s)	1191, 1729
MalI	GATC	7 cut(s)	269, 518, 804, 885, 946, 1068, 1673
MboI	GATC	7 cut(s)	267, 516, 802, 883, 944, 1066, 1671
MflI	RGATCY	2 cut(s)	944, 1671
MhlI	GDGCHC	7 cut(s)	173, 179, 376, 492, 1027, 1323, 1339
MmeI	TCCRAC	2 cut(s)	886, 1699
Mph1103I	ATGCAT	1 cut(s)	631
MreI	CGCCGGCG	1 cut(s)	205
MroI	TCCGGA	1 cut(s)	128
MroNI	GCCGGC	1 cut(s)	205
MroXI	GAANNNNTTC	1 cut(s)	561
MseI	TTAA	6 cut(s)	758, 1125, 1178, 1229, 1245, 1307
MslI	CAYNNNNRTG	2 cut(s)	659, 1427
MspR9I	CCNGG	4 cut(s)	114, 219, 342, 1598
Mva1269I	GAATGC	1 cut(s)	827
MvaI	CCWGG	1 cut(s)	342
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	7 cut(s)	194, 286, 295, 354, 1172, 1289, 1565
NaeI	GCCGGC	1 cut(s)	207
NciI	CCSGG	3 cut(s)	114, 219, 1598
NcoI	CCATGG	1 cut(s)	1187
NdeII	GATC	7 cut(s)	267, 516, 802, 883, 944, 1066, 1671
NgoMIV	GCCGGC	1 cut(s)	205
NlaIII	CATG	8 cut(s)	274, 664, 1191, 1211, 1405, 1426, 1541, 1727
NlaIV	GGNNCC	5 cut(s)	90, 96, 1356, 1464, 1673
NmeAIII	GCCGAG	1 cut(s)	137
NmuCI	GTSAC	1 cut(s)	1729
NsiI	ATGCAT	1 cut(s)	631
NspV	TTCGAA	2 cut(s)	1491, 1581
PagI	TCATGA	2 cut(s)	1401, 1537
PceI	AGGCCT	1 cut(s)	880
PciSI	GCTCTTC	1 cut(s)	1328
PcsI	WCGNNNNNNNCGW	2 cut(s)	33, 164
PctI	GAATGC	1 cut(s)	827
PdiI	GCCGGC	1 cut(s)	207
PdmI	GAANNNNTTC	1 cut(s)	561
PfeI	GAWTC	5 cut(s)	607, 1034, 1041, 1082, 1633
PflMI	CCANNNNNTGG	1 cut(s)	1364
PinAI	ACCGGT	1 cut(s)	91
PkrI	GCNGC	9 cut(s)	14, 17, 58, 61, 99, 291, 1168, 1282, 1510
PsiI	TTATAA	1 cut(s)	1451
Psp124BI	GAGCTC	2 cut(s)	492, 1323
Psp6I	CCWGG	1 cut(s)	340
PspFI	CCCAGC	2 cut(s)	101, 465
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	5 cut(s)	90, 96, 1356, 1464, 1673
PspPI	GGNCC	8 cut(s)	237, 320, 468, 1144, 1260, 1355, 1396, 1640
PstI	CTGCAG	1 cut(s)	17
PsuI	RGATCY	2 cut(s)	944, 1671
RsaI	GTAC	3 cut(s)	795, 917, 1564
RsaNI	GTAC	3 cut(s)	794, 916, 1563
RseI	CAYNNNNRTG	2 cut(s)	659, 1427
SacI	GAGCTC	2 cut(s)	492, 1323
SapI	GCTCTTC	1 cut(s)	1328
SaqAI	TTAA	6 cut(s)	758, 1125, 1178, 1229, 1245, 1307
SatI	GCNGC	9 cut(s)	13, 16, 57, 60, 98, 290, 1167, 1281, 1509
Sau3AI	GATC	7 cut(s)	267, 516, 802, 883, 944, 1066, 1671
Sau96I	GGNCC	8 cut(s)	237, 320, 468, 1144, 1260, 1355, 1396, 1640
ScrFI	CCNGG	4 cut(s)	114, 219, 342, 1598
SduI	GDGCHC	7 cut(s)	173, 179, 376, 492, 1027, 1323, 1339
SfaNI	GCATC	5 cut(s)	109, 346, 616, 721, 1408
SfcI	CTRYAG	1 cut(s)	13
SfuI	TTCGAA	2 cut(s)	1491, 1581
SgrAI	CRCCGGYG	2 cut(s)	91, 205
SinI	GGWCC	4 cut(s)	1144, 1260, 1355, 1640
SmiMI	CAYNNNNRTG	2 cut(s)	659, 1427
SseBI	AGGCCT	1 cut(s)	880
SsiI	CCGC	6 cut(s)	54, 60, 98, 179, 186, 289
SspMI	CTAG	3 cut(s)	425, 1529, 1752
SstI	GAGCTC	2 cut(s)	492, 1323
StuI	AGGCCT	1 cut(s)	880
StyD4I	CCNGG	4 cut(s)	112, 217, 340, 1596
StyI	CCWWGG	6 cut(s)	471, 784, 1088, 1187, 1299, 1702
TaaI	ACNGT	4 cut(s)	69, 800, 953, 1735
TaiI	ACGT	5 cut(s)	27, 651, 892, 1372, 1759
TaqI	TCGA	5 cut(s)	283, 442, 957, 1491, 1581
TaqII	GACCGA	1 cut(s)	1248
TauI	GCSGC	3 cut(s)	62, 100, 292
TfiI	GAWTC	5 cut(s)	607, 1034, 1041, 1082, 1633
Tru1I	TTAA	6 cut(s)	758, 1125, 1178, 1229, 1245, 1307
Tru9I	TTAA	6 cut(s)	758, 1125, 1178, 1229, 1245, 1307
TscAI	CASTG	4 cut(s)	90, 381, 1059, 1740
TseFI	GTSAC	1 cut(s)	1729
TseI	GCWGC	6 cut(s)	12, 15, 56, 1166, 1280, 1508
Tsp45I	GTSAC	1 cut(s)	1729
TspDTI	ATGAA	8 cut(s)	857, 1215, 1418, 1439, 1509, 1554, 1602, 1646
TspGWI	ACGGA	2 cut(s)	156, 240
TspRI	CASTG	4 cut(s)	90, 381, 1059, 1740
Van91I	CCANNNNNTGG	1 cut(s)	1364
VpaK11BI	GGWCC	4 cut(s)	1144, 1260, 1355, 1640
XapI	RAATTY	5 cut(s)	696, 753, 1408, 1453, 1715
XmiI	GTMKAC	2 cut(s)	651, 1012
XmnI	GAANNNNTTC	1 cut(s)	561
XspI	CTAG	3 cut(s)	425, 1529, 1752
ZraI	GACGTC	1 cut(s)	1757
Zsp2I	ATGCAT	1 cut(s)	631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.