Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001412

Physical Location & Seq

Genomic Coordinates Forward (+)

56290881 .. 56291638

Gene Structure 758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50923

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGACTGCTGCTCAAGCTTTAACCCACCCATGGCTAAGGGATGAAAGACAAGCTGTGCCTTTAGATTTAGTAATCCACAAGTTGGTTAAGTCATATGTTCGTGCCACACCTTTCAGGCATGCAGCAATGAAGGCTCTTTCCAAGGCTATGACAGAAGATGAGCTCTACTATCTTAGAGCTCAGTTTACGCTCTTGGAACCCAAACATGGATACGTGTCCCTCGATAATTTCAGAACGGTTAGTCATGGTTATTATATTCTCTTTTTGTGGAAAATGAAAGGAAGAAGCTTGCAATTTGCACAGCACTTGCATTCTCTCAGAAGCTATCAGGACTTACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

113

Amino Acids

13.31

Weight (kDa)

9.74

Isoelectric Point (pI)

43.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49370 AT5G24430
fragaria_vesca	FvH4_7g32610 FvH4_7g32610
malus_domestica	MD01G1227200.v1.1 MD07G1297500.v1.1
prunus_persica	Prupe.2G317200_v2.0.a1 Prupe.2G317200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0382501 RchiOBHm_Chr2g0138551 RchiOBHm_Chr2g0138561 RchiOBHm_Chr2g0161821 RchiOBHm_Chr6g0303421
rosa_laevigata	RLG00000007574 RLG00000010752 RLG00000023924 RLG00000026171 RLG00000031079 RLG00000034979 RLG00000035703 RLG00000036307
rosa_multiflora	Rmu_sc0000110.1_g000053 Rmu_sc0000110.1_g000055 Rmu_sc0003696.1_g000002 Rmu_sc0029402.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111900 Rroxscaffold_4G00278000 Rroxscaffold_7G00202700
rosa_rugosa	Rorug01G0435000
rosa_samantha	Rh1AG262900 Rh1AG460000 Rh1BG182300 Rh1BG416200 Rh1CG430000 Rh1DG212400 Rh1DG448600 Rh2AG553600 Rh2BG637900 Rh4AG140900 Rh4CG147700 Rh4CG147800 Rh5CG368300 Rh5CG374200 Rh6AG435500 Rh6CG169600 Rh6CG190900 Rh6DG161600 Rh7BG358800 Rh7CG197800 Rh7CG451800
rosa_wichuraiana	Rw1G001490 Rw1G041160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	82
AfiI	CCNNNNNNNGG	3 cut(s)	30, 82, 206
AflIII	ACRYGT	1 cut(s)	213
AluBI	AGCT	6 cut(s)	17, 53, 163, 179, 288, 324
AluI	AGCT	6 cut(s)	17, 53, 163, 179, 288, 324
Alw21I	GWGCWC	2 cut(s)	165, 181
ApeKI	GCWGC	2 cut(s)	8, 122
BanII	GRGCYC	2 cut(s)	165, 181
Bbv12I	GWGCWC	2 cut(s)	165, 181
BbvI	GCAGC	1 cut(s)	134
BciVI	GTATCC	1 cut(s)	203
BfaI	CTAG	1 cut(s)	340
BfuI	GTATCC	1 cut(s)	203
BisI	GCNGC	2 cut(s)	9, 123
BlsI	GCNGC	2 cut(s)	10, 124
BmiI	GGNNCC	1 cut(s)	198
Bpu10I	CCTNAGC	1 cut(s)	35
BsaAI	YACGTR	1 cut(s)	214
BsaJI	CCNNGG	2 cut(s)	29, 141
Bsc4I	CCNNNNNNNGG	3 cut(s)	30, 82, 206
Bse3DI	GCAATG	1 cut(s)	132
BseDI	CCNNGG	2 cut(s)	29, 141
BseGI	GGATG	1 cut(s)	46
BseLI	CCNNNNNNNGG	3 cut(s)	30, 82, 206
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	2 cut(s)	194, 331
BseXI	GCAGC	1 cut(s)	134
BsiHKAI	GWGCWC	2 cut(s)	165, 181
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	3 cut(s)	30, 82, 206
BsmFI	GGGAC	1 cut(s)	202
BsmI	GAATGC	1 cut(s)	310
Bsp1286I	GDGCHC	2 cut(s)	165, 181
Bsp19I	CCATGG	1 cut(s)	29
BspCNI	CTCAG	2 cut(s)	193, 330
BspLI	GGNNCC	1 cut(s)	198
BsrDI	GCAATG	1 cut(s)	132
BssECI	CCNNGG	2 cut(s)	29, 141
BssT1I	CCWWGG	2 cut(s)	29, 141
Bst4CI	ACNGT	1 cut(s)	238
BstBAI	YACGTR	1 cut(s)	214
BstC8I	GCNNGC	2 cut(s)	120, 290
BstDEI	CTNAG	4 cut(s)	35, 173, 180, 317
BstDSI	CCRYGG	1 cut(s)	29
BstF5I	GGATG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 131
BstNSI	RCATGY	1 cut(s)	122
BstV1I	GCAGC	1 cut(s)	134
BsuI	GTATCC	1 cut(s)	203
BtgI	CCRYGG	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	46
Cac8I	GCNNGC	2 cut(s)	120, 290
CviAII	CATG	4 cut(s)	30, 119, 206, 245
CviJI	RGCY	9 cut(s)	17, 34, 53, 134, 146, 163, 179, 288, 324
CviKI_1	RGCY	9 cut(s)	17, 34, 53, 134, 146, 163, 179, 288, 324
DdeI	CTNAG	4 cut(s)	35, 173, 180, 317
Ecl136II	GAGCTC	2 cut(s)	163, 179
Eco130I	CCWWGG	2 cut(s)	29, 141
Eco24I	GRGCYC	2 cut(s)	165, 181
Eco53kI	GAGCTC	2 cut(s)	163, 179
EcoICRI	GAGCTC	2 cut(s)	163, 179
EcoT14I	CCWWGG	2 cut(s)	29, 141
EcoT38I	GRGCYC	2 cut(s)	165, 181
ErhI	CCWWGG	2 cut(s)	29, 141
FaeI	CATG	4 cut(s)	33, 122, 209, 248
FaiI	YATR	8 cut(s)	31, 94, 96, 120, 149, 207, 246, 255
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	4 cut(s)	29, 118, 205, 244
FauNDI	CATATG	1 cut(s)	94
Fnu4HI	GCNGC	2 cut(s)	9, 123
FokI	GGATG	1 cut(s)	53
FriOI	GRGCYC	2 cut(s)	165, 181
Fsp4HI	GCNGC	2 cut(s)	9, 123
FspBI	CTAG	1 cut(s)	340
GluI	GCNGC	2 cut(s)	9, 123
Hin1II	CATG	4 cut(s)	33, 122, 209, 248
HindIII	AAGCTT	2 cut(s)	15, 286
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	2 cut(s)	233, 320
Hpy188III	TCNNGA	1 cut(s)	329
Hpy8I	GTNNAC	1 cut(s)	186
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	4 cut(s)	122, 292, 299, 310
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 131
HpyF3I	CTNAG	4 cut(s)	35, 173, 180, 317
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	4 cut(s)	33, 122, 209, 248
LpnPI	CCDG	2 cut(s)	100, 314
Lsp1109I	GCAGC	1 cut(s)	134
MaeI	CTAG	1 cut(s)	340
MaeII	ACGT	1 cut(s)	213
MboII	GAAGA	2 cut(s)	167, 294
MhlI	GDGCHC	2 cut(s)	165, 181
MluCI	AATT	2 cut(s)	226, 293
MnlI	CCTC	1 cut(s)	230
MseI	TTAA	2 cut(s)	20, 87
Mva1269I	GAATGC	1 cut(s)	310
MwoI	GCNNNNNNNGC	2 cut(s)	14, 131
NcoI	CCATGG	1 cut(s)	29
NdeI	CATATG	1 cut(s)	94
NlaIII	CATG	4 cut(s)	33, 122, 209, 248
NlaIV	GGNNCC	1 cut(s)	198
NspI	RCATGY	1 cut(s)	122
PaeI	GCATGC	1 cut(s)	122
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PctI	GAATGC	1 cut(s)	310
PflMI	CCANNNNNTGG	1 cut(s)	82
PkrI	GCNGC	2 cut(s)	10, 124
Ppu21I	YACGTR	1 cut(s)	214
Psp124BI	GAGCTC	2 cut(s)	165, 181
PspN4I	GGNNCC	1 cut(s)	198
SacI	GAGCTC	2 cut(s)	165, 181
SaqAI	TTAA	2 cut(s)	20, 87
SatI	GCNGC	2 cut(s)	9, 123
SduI	GDGCHC	2 cut(s)	165, 181
SetI	ASST	8 cut(s)	19, 55, 112, 165, 181, 216, 290, 326
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
SphI	GCATGC	1 cut(s)	122
Sse9I	AATT	2 cut(s)	226, 293
SspMI	CTAG	1 cut(s)	340
SstI	GAGCTC	2 cut(s)	165, 181
StyI	CCWWGG	2 cut(s)	29, 141
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	1 cut(s)	222
TasI	AATT	2 cut(s)	226, 293
Tru1I	TTAA	2 cut(s)	20, 87
Tru9I	TTAA	2 cut(s)	20, 87
TseI	GCWGC	2 cut(s)	8, 122
TspDTI	ATGAA	3 cut(s)	57, 143, 290
Van91I	CCANNNNNTGG	1 cut(s)	82
XceI	RCATGY	1 cut(s)	122
XspI	CTAG	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.