Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001412

Physical Location & Seq

Genomic Coordinates Reverse (-)

30086164 .. 30091536

Gene Structure 5373 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023924

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGACAACAGCAATAGCTATTGAAGATGTCCGTAGAGAGGTAAAAATACTGAAAGCATTATCTAGACATAAGAATCTGGTCAGATTTTATGATGCATTTGAGGATGCCAATAATGTCTACATAGTCATGGAGTTGTGTAAAGGTGGAGAACTACTGGATAAAATTTTGTCCAGGGGTGGAAGATACACAGAAGAAGATGCTAAAGTTATTGTTGTGCAAATTTTAAGTGTTATTGCGTATTGTCATCTTCAAGATGTTGTGCATTGTGATCTAAAGCCAGAGAATTTTCTTTTTGCCACAAGAGAAGAGGATGCTTCAGTGAGGGTTATTGATTTTGGTCTCTCCGATTTTATAAGGCCTGCGTTGTTGTGCTTCCATGGATACCACTTACAACAGTTGCTGTGGCTCTTAGGCTCATGGAGTTTGATATATGTGGCCATCGTAAACATGCTACAGAAGAAGCTGGAGACTCAGAAGAACAAGGAATCTGAGAATTTTATAGTAAACATTTACGCAGGAAAGAAGAAAAGAAAAATCGACGGAGGTAAGATGGGAGTGGTGATAATTGATGGAACGATGGTGAAGGACTTCATGAGCGATGAGGTGCAGTTCAAGAAGAGCGTGGACGAGCGTTTTGCTGCTCTGGATCTGAACAACGATGGTGTTCTGTCCCGGTTGGAGTTGCGGAAAGCATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

233

Amino Acids

26.56

Weight (kDa)

6.96

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	6 - 118	2.6e-17	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	8 - 119	1.1e-32	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49370 AT5G24430
fragaria_vesca	FvH4_7g32610 FvH4_7g32610
malus_domestica	MD01G1227200.v1.1 MD07G1297500.v1.1
prunus_persica	Prupe.2G317200_v2.0.a1 Prupe.2G317200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0382501 RchiOBHm_Chr2g0138551 RchiOBHm_Chr2g0138561 RchiOBHm_Chr2g0161821 RchiOBHm_Chr6g0303421
rosa_laevigata	RLG00000007574 RLG00000010752 RLG00000023924 RLG00000026171 RLG00000031079 RLG00000034979 RLG00000035703 RLG00000036307
rosa_multiflora	Rmu_sc0000110.1_g000053 Rmu_sc0000110.1_g000055 Rmu_sc0003696.1_g000002 Rmu_sc0029402.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111900 Rroxscaffold_4G00278000 Rroxscaffold_7G00202700
rosa_rugosa	Rorug01G0435000
rosa_samantha	Rh1AG262900 Rh1AG460000 Rh1BG182300 Rh1BG416200 Rh1CG430000 Rh1DG212400 Rh1DG448600 Rh2AG553600 Rh2BG637900 Rh4AG140900 Rh4CG147700 Rh4CG147800 Rh5CG368300 Rh5CG374200 Rh6AG435500 Rh6CG169600 Rh6CG190900 Rh6DG161600 Rh7BG358800 Rh7CG197800 Rh7CG451800
rosa_wichuraiana	Rw1G001490 Rw1G041160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	353
AccI	GTMKAC	1 cut(s)	117
AciI	CCGC	1 cut(s)	685
AclWI	GGATC	1 cut(s)	654
AcoI	YGGCCR	1 cut(s)	435
AcsI	RAATTY	4 cut(s)	162, 219, 283, 493
AcuI	CTGAAG	1 cut(s)	300
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	3 cut(s)	23, 251, 613
AjnI	CCWGG	1 cut(s)	170
AluBI	AGCT	2 cut(s)	17, 463
AluI	AGCT	2 cut(s)	17, 463
Alw26I	GTCTC	2 cut(s)	344, 461
AlwI	GGATC	1 cut(s)	654
AlwNI	CAGNNNCTG	1 cut(s)	400
AoxI	GGCC	2 cut(s)	356, 435
ApeKI	GCWGC	1 cut(s)	638
ApoI	RAATTY	4 cut(s)	162, 219, 283, 493
ArsI	GACNNNNNNTTYG	2 cut(s)	617, 649
Asp700I	GAANNNNTTC	2 cut(s)	587, 692
AsuC2I	CCSGG	1 cut(s)	673
AsuHPI	GGTGA	2 cut(s)	571, 592
BalI	TGGCCA	1 cut(s)	437
BbvI	GCAGC	1 cut(s)	625
BccI	CCATC	5 cut(s)	446, 544, 563, 571, 653
BcgI	CGANNNNNNTGC	2 cut(s)	617, 651
BciT130I	CCWGG	1 cut(s)	172
BciVI	GTATCC	1 cut(s)	374
BcnI	CCSGG	1 cut(s)	673
BcoDI	GTCTC	2 cut(s)	344, 461
BfaI	CTAG	2 cut(s)	63, 697
BfmI	CTRYAG	1 cut(s)	452
BfuI	GTATCC	1 cut(s)	374
BisI	GCNGC	1 cut(s)	639
BlsI	GCNGC	1 cut(s)	640
Bme1390I	CCNGG	2 cut(s)	172, 673
BmrFI	CCNGG	2 cut(s)	172, 673
BmsI	GCATC	4 cut(s)	82, 94, 187, 301
BpmI	CTGGAG	1 cut(s)	485
BpuMI	CCSGG	1 cut(s)	673
BsaI	GGTCTC	1 cut(s)	344
BsaJI	CCNNGG	2 cut(s)	171, 376
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse1I	ACTGG	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	172
BseDI	CCNNGG	2 cut(s)	171, 376
BseGI	GGATG	2 cut(s)	109, 316
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMII	CTCAG	2 cut(s)	480, 485
BseNI	ACTGG	1 cut(s)	159
BseXI	GCAGC	1 cut(s)	625
BsgI	GTGCAG	1 cut(s)	626
BshFI	GGCC	2 cut(s)	358, 437
BsiSI	CCGG	1 cut(s)	673
BslFI	GGGAC	1 cut(s)	655
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	2 cut(s)	344, 461
BsmFI	GGGAC	1 cut(s)	655
BsmI	GAATGC	1 cut(s)	692
BsnI	GGCC	2 cut(s)	358, 437
Bso31I	GGTCTC	1 cut(s)	344
Bsp143I	GATC	2 cut(s)	268, 646
Bsp19I	CCATGG	1 cut(s)	376
BspACI	CCGC	1 cut(s)	685
BspANI	GGCC	2 cut(s)	358, 437
BspCNI	CTCAG	2 cut(s)	481, 484
BspHI	TCATGA	1 cut(s)	591
BspPI	GGATC	1 cut(s)	654
BspQI	GCTCTTC	1 cut(s)	611
BspTNI	GGTCTC	1 cut(s)	344
BsrI	ACTGG	1 cut(s)	159
BssECI	CCNNGG	2 cut(s)	171, 376
BssMI	GATC	2 cut(s)	268, 646
BssT1I	CCWWGG	1 cut(s)	376
Bst2UI	CCWGG	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	396
Bst6I	CTCTTC	2 cut(s)	300, 611
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	3 cut(s)	409, 471, 489
BstDSI	CCRYGG	1 cut(s)	376
BstF5I	GGATG	2 cut(s)	109, 316
BstKTI	GATC	2 cut(s)	271, 649
BstMAI	GTCTC	2 cut(s)	344, 461
BstMBI	GATC	2 cut(s)	268, 646
BstNI	CCWGG	1 cut(s)	172
BstNSI	RCATGY	1 cut(s)	451
BstSCI	CCNGG	2 cut(s)	170, 671
BstSFI	CTRYAG	1 cut(s)	452
BstV1I	GCAGC	1 cut(s)	625
BstX2I	RGATCY	1 cut(s)	646
BstYI	RGATCY	1 cut(s)	646
BsuI	GTATCC	1 cut(s)	374
BsuRI	GGCC	2 cut(s)	358, 437
BtgI	CCRYGG	1 cut(s)	376
BtgZI	GCGATG	1 cut(s)	612
BtsCI	GGATG	2 cut(s)	109, 316
BtsIMutI	CAGTG	1 cut(s)	324
Cac8I	GCNNGC	1 cut(s)	360
CaiI	CAGNNNCTG	1 cut(s)	400
CciI	TCATGA	1 cut(s)	591
CviAII	CATG	5 cut(s)	127, 377, 417, 448, 592
CviJI	RGCY	7 cut(s)	17, 277, 358, 406, 414, 437, 463
CviKI_1	RGCY	7 cut(s)	17, 277, 358, 406, 414, 437, 463
DdeI	CTNAG	3 cut(s)	409, 471, 489
DpnI	GATC	2 cut(s)	270, 648
DpnII	GATC	2 cut(s)	268, 646
EaeI	YGGCCR	1 cut(s)	435
Eam1104I	CTCTTC	2 cut(s)	300, 611
EarI	CTCTTC	2 cut(s)	300, 611
Eco130I	CCWWGG	1 cut(s)	376
Eco147I	AGGCCT	1 cut(s)	358
Eco31I	GGTCTC	1 cut(s)	344
Eco57I	CTGAAG	1 cut(s)	300
EcoRII	CCWGG	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	376
EcoT22I	ATGCAT	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	376
FaeI	CATG	5 cut(s)	130, 380, 420, 451, 595
FaqI	GGGAC	1 cut(s)	655
FatI	CATG	5 cut(s)	126, 376, 416, 447, 591
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	639
FokI	GGATG	2 cut(s)	116, 323
Fsp4HI	GCNGC	1 cut(s)	639
FspBI	CTAG	2 cut(s)	63, 697
GluI	GCNGC	1 cut(s)	639
GsuI	CTGGAG	1 cut(s)	485
HaeIII	GGCC	2 cut(s)	358, 437
HapII	CCGG	1 cut(s)	673
Hin1II	CATG	5 cut(s)	130, 380, 420, 451, 595
HinfI	GANTC	3 cut(s)	73, 469, 485
HpaII	CCGG	1 cut(s)	673
HphI	GGTGA	2 cut(s)	571, 592
Hpy166II	GTNNAC	4 cut(s)	118, 445, 505, 625
Hpy188I	TCNGA	5 cut(s)	83, 346, 474, 490, 651
Hpy188III	TCNNGA	5 cut(s)	63, 251, 592, 613, 644
Hpy8I	GTNNAC	4 cut(s)	118, 445, 505, 625
Hpy99I	CGWCG	1 cut(s)	542
HpyAV	CCTTC	1 cut(s)	577
HpyCH4III	ACNGT	1 cut(s)	396
HpyCH4V	TGCA	4 cut(s)	95, 217, 262, 607
HpyF3I	CTNAG	3 cut(s)	409, 471, 489
Hsp92II	CATG	5 cut(s)	130, 380, 420, 451, 595
Kzo9I	GATC	2 cut(s)	268, 646
LguI	GCTCTTC	1 cut(s)	611
Lsp1109I	GCAGC	1 cut(s)	625
LweI	GCATC	4 cut(s)	82, 94, 187, 301
MaeI	CTAG	2 cut(s)	63, 697
MalI	GATC	2 cut(s)	270, 648
MboI	GATC	2 cut(s)	268, 646
MflI	RGATCY	1 cut(s)	646
MlsI	TGGCCA	1 cut(s)	437
MluCI	AATT	5 cut(s)	162, 219, 283, 493, 564
MluNI	TGGCCA	1 cut(s)	437
MlyI	GAGTC	1 cut(s)	463
MmeI	TCCRAC	1 cut(s)	657
MnlI	CCTC	6 cut(s)	31, 94, 301, 315, 536, 595
Mox20I	TGGCCA	1 cut(s)	437
Mph1103I	ATGCAT	1 cut(s)	97
MroXI	GAANNNNTTC	2 cut(s)	587, 692
MscI	TGGCCA	1 cut(s)	437
MseI	TTAA	1 cut(s)	224
MslI	CAYNNNNRTG	1 cut(s)	125
Msp20I	TGGCCA	1 cut(s)	437
MspI	CCGG	1 cut(s)	673
MspR9I	CCNGG	2 cut(s)	172, 673
Mva1269I	GAATGC	1 cut(s)	692
MvaI	CCWGG	1 cut(s)	172
NciI	CCSGG	1 cut(s)	673
NcoI	CCATGG	1 cut(s)	376
NdeII	GATC	2 cut(s)	268, 646
NlaIII	CATG	5 cut(s)	130, 380, 420, 451, 595
NsiI	ATGCAT	1 cut(s)	97
NspI	RCATGY	1 cut(s)	451
PagI	TCATGA	1 cut(s)	591
PceI	AGGCCT	1 cut(s)	358
PciSI	GCTCTTC	1 cut(s)	611
PctI	GAATGC	1 cut(s)	692
PdmI	GAANNNNTTC	2 cut(s)	587, 692
PfeI	GAWTC	2 cut(s)	73, 485
PkrI	GCNGC	1 cut(s)	640
PleI	GAGTC	1 cut(s)	463
PpsI	GAGTC	1 cut(s)	463
PsiI	TTATAA	1 cut(s)	353
Psp6I	CCWGG	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	170
PstNI	CAGNNNCTG	1 cut(s)	400
PsuI	RGATCY	1 cut(s)	646
RseI	CAYNNNNRTG	1 cut(s)	125
SapI	GCTCTTC	1 cut(s)	611
SaqAI	TTAA	1 cut(s)	224
SatI	GCNGC	1 cut(s)	639
Sau3AI	GATC	2 cut(s)	268, 646
SchI	GAGTC	1 cut(s)	463
ScrFI	CCNGG	2 cut(s)	172, 673
SetI	ASST	6 cut(s)	19, 42, 145, 465, 547, 606
SfaNI	GCATC	4 cut(s)	82, 94, 187, 301
SfcI	CTRYAG	1 cut(s)	452
SmiMI	CAYNNNNRTG	1 cut(s)	125
Sse9I	AATT	5 cut(s)	162, 219, 283, 493, 564
SseBI	AGGCCT	1 cut(s)	358
SsiI	CCGC	1 cut(s)	685
SspMI	CTAG	2 cut(s)	63, 697
StuI	AGGCCT	1 cut(s)	358
StyD4I	CCNGG	2 cut(s)	170, 671
StyI	CCWWGG	1 cut(s)	376
TaaI	ACNGT	1 cut(s)	396
TaqI	TCGA	1 cut(s)	537
TasI	AATT	5 cut(s)	162, 219, 283, 493, 564
TfiI	GAWTC	2 cut(s)	73, 485
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TscAI	CASTG	1 cut(s)	324
TseI	GCWGC	1 cut(s)	638
TspDTI	ATGAA	1 cut(s)	580
TspGWI	ACGGA	2 cut(s)	20, 555
TspRI	CASTG	1 cut(s)	324
XapI	RAATTY	4 cut(s)	162, 219, 283, 493
XbaI	TCTAGA	1 cut(s)	62
XceI	RCATGY	1 cut(s)	451
XmiI	GTMKAC	1 cut(s)	117
XmnI	GAANNNNTTC	2 cut(s)	587, 692
XspI	CTAG	2 cut(s)	63, 697
Zsp2I	ATGCAT	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.