Rh1BG416200

CDPK-related kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
53839519 .. 53844620
5102 bp
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UTR
Exon/CDS
Intron
Rh1BG416200.1

Sequence Viewer

Length: 1242 bp
ATGGGGCATTGCTGCAGCAAAAGCGCCGCCGTTTCGGTGGCCAACAACAACCACGAACACCCGACCCCCGCCTCCGCCGTCGCCGTCCAGCAGTCTAAACAGCCGCCGGTGCCGACGAGCCCGGTCGCCGGCGATGTGAAGAACACTCCGTCTCACTCATTTACGGCGAGTCCGTTCCCGAGCCCGCTCCCGGCCGGAGTGGCGCCGTCGCCGGCGAGGACGCCAGGGAGGAAGTTCAGGTGGCCGTTGCCGCCTCCGTCTCCGGCGAAGCCGATCATGGCCGCGTTTCGGCGGCGGAGGGAGGCGAAGCCGAAGGACGGGCCGATACCGGAGGAGAATAATCACCAGGGCGGCGAAGAAGAAGGAGAGAGGGGGCTGGACAAGAGCTTTGGGTATGGGAAGAACTTTGGGGCGAAATTTGAATTGGGGAAGGAGGTGGGCCGAGGGCATTTTGGTCATACTTGCTCGGCAAAGGGAAAGAAGGGAGAGCTTAAGGGTCAGCCTGTGGCTGTCAAGATCATATCCAAAGCAAAGATGACAACAGCAATAGCTATTGAAGATGTCCGTAGAGAGGTGAAAATACTGAAAGCATTATCTGGACATAAGAATCTGGTCAAATTTTATGATGCATTTGAGGATGCCAATAATGTCTACATAGTCATGGAGTTGTGTGAAGGTGGAGAACTACTGGATAAAATTTTGTCCAGGGGTGGAAGATACACAGAAGAAGATGCTAAAGTTATTGTTGTGCAAATTTTAAGTGTTGTTGCCTACTGTCATCTTCAAGGTGTTGTGCATCGTGATCTAAAGCCAGAGAATTTTCTTTTTGCCACTAGAGAAGAGGATGCTTCAATGAGGGTTATTGATTTTGGTCTCTCCGATTTTATTAGGCCTGATCAGCGCCTCAACGATATTGTTGGTAGTGCATACTATGTTGCACCTGAAGTGCTACATAGATCCTACAGTGTTGAAGCAGATATGTGGAGCATAGGTGTAATAACATATATATTGCTATGTGGAAGTAGACCTTTCTGGGCACGAACTGAATCAGGAATCTTCCGCTCGGTGCTAAGAGCTGATCCTAACTTTAATGATACACCTTGGCCCACAGTGTCCCCAGAAGCCAAAGATTTTGTCAAGAGGCTTCTGAACAAGGATCACAGAAAAAGAATGACTGCTGCTCAAGCTTTAAGTAAGTCAGTTTTTAATATCCAATACGATCTTCAGTGGATTCATAAATAA

Protein Analysis

413

Amino Acids

45.68

Weight (kDa)

9.25

Isoelectric Point (pI)

51.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 140 - 401 1.1e-71 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 141 - 395 1.2e-34 Protein tyrosine and serine/threonine kinase
Kdo PF06293 215 - 293 1.1e-06 Lipopolysaccharide kinase (Kdo/WaaP) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 109, 202
AccBSI CCGCTC 2 cut(s) 187, 1062
AccI GTMKAC 2 cut(s) 651, 1024
AccII CGCG 1 cut(s) 284
AclWI GGATC 3 cut(s) 951, 1073, 1164
AcoI YGGCCR 4 cut(s) 39, 192, 242, 279
AcsI RAATTY 5 cut(s) 416, 617, 696, 753, 817
AcuI CTGAAG 2 cut(s) 963, 1208
AcyI GRCGYC 2 cut(s) 203, 221
AfiI CCNNNNNNNGG 5 cut(s) 128, 190, 288, 317, 571
AflII CTTAAG 1 cut(s) 491
AgsI TTSAA 5 cut(s) 422, 557, 785, 852, 971
AjnI CCWGG 3 cut(s) 223, 345, 704
AjuI GAANNNNNNNTTGG 4 cut(s) 407, 439, 1206, 1238
AluBI AGCT 5 cut(s) 387, 490, 551, 1076, 1187
AluI AGCT 5 cut(s) 387, 490, 551, 1076, 1187
Alw26I GTCTC 3 cut(s) 156, 264, 878
AlwI GGATC 3 cut(s) 951, 1073, 1164
Ama87I CYCGRG 1 cut(s) 178
AoxI GGCC 8 cut(s) 39, 192, 242, 279, 320, 439, 890, 1103
ApeKI GCWGC 3 cut(s) 12, 15, 1178
ApoI RAATTY 5 cut(s) 416, 617, 696, 753, 817
ArsI GACNNNNNNTTYG 4 cut(s) 371, 403, 1119, 1151
AspLEI GCGC 3 cut(s) 26, 205, 903
AspS9I GGNCC 3 cut(s) 320, 439, 1104
AsuC2I CCSGG 2 cut(s) 122, 191
AsuHPI GGTGA 2 cut(s) 335, 586
AvaI CYCGRG 1 cut(s) 178
BaeGI GKGCMC 1 cut(s) 1039
BalI TGGCCA 1 cut(s) 41
BanI GGYRCC 2 cut(s) 109, 202
BanII GRGCYC 2 cut(s) 122, 185
BbvI GCAGC 2 cut(s) 27, 1165
BceAI ACGGC 6 cut(s) 14, 62, 68, 180, 190, 229
BciT130I CCWGG 3 cut(s) 225, 347, 706
BclI TGATCA 1 cut(s) 895
BcnI CCSGG 2 cut(s) 122, 191
BcoDI GTCTC 3 cut(s) 156, 264, 878
BfaI CTAG 1 cut(s) 834
BfmI CTRYAG 2 cut(s) 13, 961
BfoI RGCGCY 3 cut(s) 27, 206, 904
BfrI CTTAAG 1 cut(s) 491
BglI GCCNNNNNGGC 1 cut(s) 200
BisI GCNGC 9 cut(s) 13, 16, 27, 104, 251, 282, 293, 352, 1179
BlsI GCNGC 9 cut(s) 14, 17, 28, 105, 252, 283, 294, 353, 1180
Bme1390I CCNGG 5 cut(s) 122, 191, 225, 347, 706
BmeT110I CYCGRG 1 cut(s) 178
BmgT120I GGNCC 3 cut(s) 320, 439, 1104
BmiI GGNNCC 2 cut(s) 111, 204
BmrFI CCNGG 5 cut(s) 122, 191, 225, 347, 706
BmsI GCATC 5 cut(s) 616, 628, 721, 805, 835
BpuEI CTTGAG 1 cut(s) 1167
BpuMI CCSGG 2 cut(s) 122, 191
BsaHI GRCGYC 2 cut(s) 203, 221
BsaI GGTCTC 1 cut(s) 878
BsaJI CCNNGG 5 cut(s) 224, 346, 442, 705, 1100
BsaWI WCCGGW 1 cut(s) 328
BsaXI ACNNNNNCTCC 2 cut(s) 976, 1006
Bsc4I CCNNNNNNNGG 5 cut(s) 128, 190, 288, 317, 571
Bse118I RCCGGY 3 cut(s) 106, 128, 211
Bse1I ACTGG 1 cut(s) 693
Bse3DI GCAATG 1 cut(s) 7
BseBI CCWGG 3 cut(s) 225, 347, 706
BseDI CCNNGG 5 cut(s) 224, 346, 442, 705, 1100
BseGI GGATG 2 cut(s) 643, 850
BseLI CCNNNNNNNGG 5 cut(s) 128, 190, 288, 317, 571
BseMI GCAATG 1 cut(s) 7
BseNI ACTGG 1 cut(s) 693
BseRI GAGGAG 1 cut(s) 347
BseSI GKGCMC 1 cut(s) 1039
BseX3I CGGCCG 1 cut(s) 192
BseXI GCAGC 2 cut(s) 27, 1165
Bsh1236I CGCG 1 cut(s) 284
Bsh1285I CGRYCG 2 cut(s) 126, 195
BshFI GGCC 8 cut(s) 41, 194, 244, 281, 322, 441, 892, 1105
BshNI GGYRCC 2 cut(s) 109, 202
BsiEI CGRYCG 2 cut(s) 126, 195
BsiHKCI CYCGRG 1 cut(s) 178
BsiSI CCGG 8 cut(s) 107, 122, 129, 191, 195, 212, 263, 329
BslFI GGGAC 1 cut(s) 1099
BslI CCNNNNNNNGG 5 cut(s) 128, 190, 288, 317, 571
BsmAI GTCTC 3 cut(s) 156, 264, 878
BsmBI CGTCTC 2 cut(s) 156, 264
BsmFI GGGAC 1 cut(s) 1099
BsnI GGCC 8 cut(s) 41, 194, 244, 281, 322, 441, 892, 1105
Bso31I GGTCTC 1 cut(s) 878
BsoBI CYCGRG 1 cut(s) 178
Bsp1286I GDGCHC 3 cut(s) 122, 185, 1039
Bsp143I GATC 8 cut(s) 273, 516, 802, 895, 956, 1078, 1156, 1219
BspANI GGCC 8 cut(s) 41, 194, 244, 281, 322, 441, 892, 1105
BspFNI CGCG 1 cut(s) 284
BspLI GGNNCC 2 cut(s) 111, 204
BspMAI CTGCAG 1 cut(s) 17
BspPI GGATC 3 cut(s) 951, 1073, 1164
BspT107I GGYRCC 2 cut(s) 109, 202
BspTI CTTAAG 1 cut(s) 491
BspTNI GGTCTC 1 cut(s) 878
BsrBI CCGCTC 2 cut(s) 187, 1062
BsrDI GCAATG 1 cut(s) 7
BsrFI RCCGGY 3 cut(s) 106, 128, 211
BsrI ACTGG 1 cut(s) 693
BssAI RCCGGY 3 cut(s) 106, 128, 211
BssECI CCNNGG 5 cut(s) 224, 346, 442, 705, 1100
BssMI GATC 8 cut(s) 273, 516, 802, 895, 956, 1078, 1156, 1219
BssNI GRCGYC 2 cut(s) 203, 221
BssT1I CCWWGG 1 cut(s) 1100
Bst2UI CCWGG 3 cut(s) 225, 347, 706
Bst4CI ACNGT 3 cut(s) 776, 965, 1111
Bst6I CTCTTC 1 cut(s) 834
BstACI GRCGYC 2 cut(s) 203, 221
BstAFI CTTAAG 1 cut(s) 491
BstC8I GCNNGC 3 cut(s) 130, 185, 213
BstDEI CTNAG 1 cut(s) 1070
BstF5I GGATG 2 cut(s) 643, 850
BstFNI CGCG 1 cut(s) 284
BstH2I RGCGCY 3 cut(s) 27, 206, 904
BstHHI GCGC 3 cut(s) 26, 205, 903
BstKTI GATC 8 cut(s) 276, 519, 805, 898, 959, 1081, 1159, 1222
BstMAI GTCTC 3 cut(s) 156, 264, 878
BstMBI GATC 8 cut(s) 273, 516, 802, 895, 956, 1078, 1156, 1219
BstMCI CGRYCG 2 cut(s) 126, 195
BstMWI GCNNNNNNNGC 6 cut(s) 21, 109, 200, 250, 898, 1184
BstNI CCWGG 3 cut(s) 225, 347, 706
BstSCI CCNGG 5 cut(s) 120, 189, 223, 345, 704
BstSFI CTRYAG 2 cut(s) 13, 961
BstSLI GKGCMC 1 cut(s) 1039
BstUI CGCG 1 cut(s) 284
BstV1I GCAGC 2 cut(s) 27, 1165
BstX2I RGATCY 1 cut(s) 956
BstYI RGATCY 1 cut(s) 956
BstZI CGGCCG 1 cut(s) 192
BsuRI GGCC 8 cut(s) 41, 194, 244, 281, 322, 441, 892, 1105
BtgZI GCGATG 1 cut(s) 147
BtsCI GGATG 2 cut(s) 643, 850
BtsIMutI CAGTG 3 cut(s) 970, 1116, 1232
Cac8I GCNNGC 3 cut(s) 130, 185, 213
CfoI GCGC 3 cut(s) 26, 205, 903
Cfr10I RCCGGY 3 cut(s) 106, 128, 211
Cfr13I GGNCC 3 cut(s) 320, 439, 1104
CseI GACGC 1 cut(s) 229
CviAII CATG 2 cut(s) 277, 661
DdeI CTNAG 1 cut(s) 1070
DinI GGCGCC 1 cut(s) 204
DpnI GATC 8 cut(s) 275, 518, 804, 897, 958, 1080, 1158, 1221
DpnII GATC 8 cut(s) 273, 516, 802, 895, 956, 1078, 1156, 1219
EaeI YGGCCR 4 cut(s) 39, 192, 242, 279
EagI CGGCCG 1 cut(s) 192
Eam1104I CTCTTC 1 cut(s) 834
EarI CTCTTC 1 cut(s) 834
EciI GGCGGA 2 cut(s) 64, 310
EclXI CGGCCG 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 1100
Eco147I AGGCCT 1 cut(s) 892
Eco24I GRGCYC 2 cut(s) 122, 185
Eco31I GGTCTC 1 cut(s) 878
Eco52I CGGCCG 1 cut(s) 192
Eco57I CTGAAG 2 cut(s) 963, 1208
Eco88I CYCGRG 1 cut(s) 178
EcoRII CCWGG 3 cut(s) 223, 345, 704
EcoT14I CCWWGG 1 cut(s) 1100
EcoT22I ATGCAT 1 cut(s) 631
EcoT38I GRGCYC 2 cut(s) 122, 185
EgeI GGCGCC 1 cut(s) 204
EheI GGCGCC 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 1100
Esp3I CGTCTC 2 cut(s) 156, 264
FaeI CATG 2 cut(s) 280, 664
FalI AAGNNNNNCTT 2 cut(s) 1012, 1044
FaqI GGGAC 1 cut(s) 1099
FatI CATG 2 cut(s) 276, 660
FauI CCCGC 2 cut(s) 76, 192
FbaI TGATCA 1 cut(s) 895
FblI GTMKAC 2 cut(s) 651, 1024
Fnu4HI GCNGC 9 cut(s) 13, 16, 27, 104, 251, 282, 293, 352, 1179
FokI GGATG 2 cut(s) 650, 857
FriOI GRGCYC 2 cut(s) 122, 185
Fsp4HI GCNGC 9 cut(s) 13, 16, 27, 104, 251, 282, 293, 352, 1179
FspBI CTAG 1 cut(s) 834
GlaI GCGC 3 cut(s) 25, 204, 902
GluI GCNGC 9 cut(s) 13, 16, 27, 104, 251, 282, 293, 352, 1179
HaeII RGCGCY 3 cut(s) 27, 206, 904
HaeIII GGCC 8 cut(s) 41, 194, 244, 281, 322, 441, 892, 1105
HapII CCGG 8 cut(s) 107, 122, 129, 191, 195, 212, 263, 329
HgaI GACGC 1 cut(s) 229
HhaI GCGC 3 cut(s) 26, 205, 903
Hin1I GRCGYC 2 cut(s) 203, 221
Hin1II CATG 2 cut(s) 280, 664
Hin6I GCGC 3 cut(s) 24, 203, 901
HinP1I GCGC 3 cut(s) 24, 203, 901
HindIII AAGCTT 1 cut(s) 1185
HinfI GANTC 5 cut(s) 169, 607, 1046, 1053, 1231
HpaII CCGG 8 cut(s) 107, 122, 129, 191, 195, 212, 263, 329
HphI GGTGA 2 cut(s) 335, 586
Hpy166II GTNNAC 2 cut(s) 652, 1025
Hpy188I TCNGA 2 cut(s) 880, 1149
Hpy188III TCNNGA 6 cut(s) 178, 514, 597, 800, 1050, 1138
Hpy8I GTNNAC 2 cut(s) 652, 1025
Hpy99I CGWCG 3 cut(s) 83, 118, 211
HpyAV CCTTC 5 cut(s) 307, 356, 424, 475, 668
HpyCH4III ACNGT 3 cut(s) 776, 965, 1111
HpyCH4V TGCA 6 cut(s) 15, 629, 751, 796, 926, 938
HpyF10VI GCNNNNNNNGC 6 cut(s) 21, 109, 200, 250, 898, 1184
HpyF3I CTNAG 1 cut(s) 1070
Hsp92I GRCGYC 2 cut(s) 203, 221
Hsp92II CATG 2 cut(s) 280, 664
HspAI GCGC 3 cut(s) 24, 203, 901
KasI GGCGCC 1 cut(s) 202
KroI GCCGGC 2 cut(s) 128, 211
KroNI GCCGGC 2 cut(s) 130, 213
Ksp22I TGATCA 1 cut(s) 895
Kzo9I GATC 8 cut(s) 273, 516, 802, 895, 956, 1078, 1156, 1219
LmnI GCTCC 2 cut(s) 192, 984
Lsp1109I GCAGC 2 cut(s) 27, 1165
LweI GCATC 5 cut(s) 616, 628, 721, 805, 835
MaeI CTAG 1 cut(s) 834
MalI GATC 8 cut(s) 275, 518, 804, 897, 958, 1080, 1158, 1221
MbiI CCGCTC 2 cut(s) 187, 1062
MboI GATC 8 cut(s) 273, 516, 802, 895, 956, 1078, 1156, 1219
MflI RGATCY 1 cut(s) 956
MhlI GDGCHC 3 cut(s) 122, 185, 1039
MlsI TGGCCA 1 cut(s) 41
MluCI AATT 6 cut(s) 416, 422, 617, 696, 753, 817
MluNI TGGCCA 1 cut(s) 41
Mly113I GGCGCC 1 cut(s) 203
MlyI GAGTC 1 cut(s) 178
Mox20I TGGCCA 1 cut(s) 41
Mph1103I ATGCAT 1 cut(s) 631
MreI CGCCGGCG 2 cut(s) 128, 211
MroNI GCCGGC 2 cut(s) 128, 211
MscI TGGCCA 1 cut(s) 41
MseI TTAA 5 cut(s) 492, 758, 1089, 1190, 1206
MslI CAYNNNNRTG 1 cut(s) 659
Msp20I TGGCCA 1 cut(s) 41
MspCI CTTAAG 1 cut(s) 491
MspI CCGG 8 cut(s) 107, 122, 129, 191, 195, 212, 263, 329
MspR9I CCNGG 5 cut(s) 122, 191, 225, 347, 706
MvaI CCWGG 3 cut(s) 225, 347, 706
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 6 cut(s) 21, 109, 200, 250, 898, 1184
NaeI GCCGGC 2 cut(s) 130, 213
NarI GGCGCC 1 cut(s) 203
NciI CCSGG 2 cut(s) 122, 191
NdeII GATC 8 cut(s) 273, 516, 802, 895, 956, 1078, 1156, 1219
NgoMIV GCCGGC 2 cut(s) 128, 211
NlaIII CATG 2 cut(s) 280, 664
NlaIV GGNNCC 2 cut(s) 111, 204
NmeAIII GCCGAG 2 cut(s) 446, 467
NsiI ATGCAT 1 cut(s) 631
PceI AGGCCT 1 cut(s) 892
PcsI WCGNNNNNNNCGW 1 cut(s) 170
PdiI GCCGGC 2 cut(s) 130, 213
PfeI GAWTC 4 cut(s) 607, 1046, 1053, 1231
PkrI GCNGC 9 cut(s) 14, 17, 28, 105, 252, 283, 294, 353, 1180
PleI GAGTC 1 cut(s) 177
PluTI GGCGCC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 177
Psp6I CCWGG 3 cut(s) 223, 345, 704
PspGI CCWGG 3 cut(s) 223, 345, 704
PspN4I GGNNCC 2 cut(s) 111, 204
PspPI GGNCC 3 cut(s) 320, 439, 1104
PstI CTGCAG 1 cut(s) 17
PsuI RGATCY 1 cut(s) 956
RseI CAYNNNNRTG 1 cut(s) 659
SaqAI TTAA 5 cut(s) 492, 758, 1089, 1190, 1206
SatI GCNGC 9 cut(s) 13, 16, 27, 104, 251, 282, 293, 352, 1179
Sau3AI GATC 8 cut(s) 273, 516, 802, 895, 956, 1078, 1156, 1219
Sau96I GGNCC 3 cut(s) 320, 439, 1104
SchI GAGTC 1 cut(s) 178
ScrFI CCNGG 5 cut(s) 122, 191, 225, 347, 706
SduI GDGCHC 3 cut(s) 122, 185, 1039
SfaNI GCATC 5 cut(s) 616, 628, 721, 805, 835
SfcI CTRYAG 2 cut(s) 13, 961
SfoI GGCGCC 1 cut(s) 204
SgrAI CRCCGGYG 3 cut(s) 106, 128, 211
SmiMI CAYNNNNRTG 1 cut(s) 659
SmlI CTYRAG 2 cut(s) 491, 1182
SmoI CTYRAG 2 cut(s) 491, 1182
Sse9I AATT 6 cut(s) 416, 422, 617, 696, 753, 817
SseBI AGGCCT 1 cut(s) 892
SspDI GGCGCC 1 cut(s) 202
SspMI CTAG 1 cut(s) 834
StuI AGGCCT 1 cut(s) 892
StyD4I CCNGG 5 cut(s) 120, 189, 223, 345, 704
StyI CCWWGG 1 cut(s) 1100
TaaI ACNGT 3 cut(s) 776, 965, 1111
TasI AATT 6 cut(s) 416, 422, 617, 696, 753, 817
TauI GCSGC 6 cut(s) 29, 106, 253, 284, 295, 354
TfiI GAWTC 4 cut(s) 607, 1046, 1053, 1231
Tru1I TTAA 5 cut(s) 492, 758, 1089, 1190, 1206
Tru9I TTAA 5 cut(s) 492, 758, 1089, 1190, 1206
TscAI CASTG 3 cut(s) 970, 1116, 1232
TseI GCWGC 3 cut(s) 12, 15, 1178
TspDTI ATGAA 1 cut(s) 1223
TspGWI ACGGA 4 cut(s) 138, 162, 246, 554
TspRI CASTG 3 cut(s) 970, 1116, 1232
Vha464I CTTAAG 1 cut(s) 491
XapI RAATTY 5 cut(s) 416, 617, 696, 753, 817
XmiI GTMKAC 2 cut(s) 651, 1024
XspI CTAG 1 cut(s) 834
Zsp2I ATGCAT 1 cut(s) 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.