Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001412

Physical Location & Seq

Genomic Coordinates Reverse (-)

36733492 .. 36735555

Gene Structure 2064 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00111900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGATCGGAAGGAGGAGGCGACCCTGCGACAAAGTTTCACGGGCGGAGGTGACCGGAGATTCTGGCCATATTACTCATAATGTGAAGAGGTTGTGTGAAGGTGGAGAACTACTGGATAAAATTTTGTCCAGGGGTGGAAGATACATAGAAGAAGATGCTAAAGTTATTGTTGTGCAAATTCTAAGTGTTGTTGCCTATTGTCATCTTCAAGGTGTTGTGCATCGTGATCTAAAGCCAGAGAATTTTCTTTTTGCCACAAGACAAGAGGATGCTTCAATAAGGGTTATTGATTTTGGTCTCTCCGATTTTATTAGGCCTGATCAGCGCCTCAACGATATTGTTGGTAGTGCATACTATGTTGCACCTGAAGTGGTACATAGATCCTACGGTGTTGAAGCAGATATGTTGAGCATAGGTGTAATAACATATATATTGCTATGTGGAAGTAGACCTTTCTGGGCACGAATTGAATCAGGAATCTTCCGCTCGGTGCTAAGAGCTGATCCTAACTTTAATGATACACCTTGGCCCATAGTGTCCCCAAAAGCCAAAGATTTTGTCAAGAGGCTTCCGAACAAGGATCACAGAAAAAGAATTGACTGCTGCTCAAGCTTTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

206

Amino Acids

23.38

Weight (kDa)

9.06

Isoelectric Point (pI)

52.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	28 - 161	7.8e-12	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	29 - 202	1.3e-42	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49370 AT5G24430
fragaria_vesca	FvH4_7g32610 FvH4_7g32610
malus_domestica	MD01G1227200.v1.1 MD07G1297500.v1.1
prunus_persica	Prupe.2G317200_v2.0.a1 Prupe.2G317200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0382501 RchiOBHm_Chr2g0138551 RchiOBHm_Chr2g0138561 RchiOBHm_Chr2g0161821 RchiOBHm_Chr6g0303421
rosa_laevigata	RLG00000007574 RLG00000010752 RLG00000023924 RLG00000026171 RLG00000031079 RLG00000034979 RLG00000035703 RLG00000036307
rosa_multiflora	Rmu_sc0000110.1_g000053 Rmu_sc0000110.1_g000055 Rmu_sc0003696.1_g000002 Rmu_sc0029402.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111900 Rroxscaffold_4G00278000 Rroxscaffold_7G00202700
rosa_rugosa	Rorug01G0435000
rosa_samantha	Rh1AG262900 Rh1AG460000 Rh1BG182300 Rh1BG416200 Rh1CG430000 Rh1DG212400 Rh1DG448600 Rh2AG553600 Rh2BG637900 Rh4AG140900 Rh4CG147700 Rh4CG147800 Rh5CG368300 Rh5CG374200 Rh6AG435500 Rh6CG169600 Rh6CG190900 Rh6DG161600 Rh7BG358800 Rh7CG197800 Rh7CG451800
rosa_wichuraiana	Rw1G001490 Rw1G041160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	486
AccI	GTMKAC	1 cut(s)	448
AciI	CCGC	2 cut(s)	44, 484
AclWI	GGATC	3 cut(s)	375, 497, 588
AcoI	YGGCCR	1 cut(s)	64
AcsI	RAATTY	3 cut(s)	120, 177, 241
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	1 cut(s)	375
AgsI	TTSAA	4 cut(s)	209, 276, 395, 470
AjnI	CCWGG	1 cut(s)	128
AluBI	AGCT	2 cut(s)	500, 612
AluI	AGCT	2 cut(s)	500, 612
Alw26I	GTCTC	1 cut(s)	302
AlwI	GGATC	3 cut(s)	375, 497, 588
AoxI	GGCC	3 cut(s)	64, 314, 527
ApeKI	GCWGC	1 cut(s)	603
ApoI	RAATTY	3 cut(s)	120, 177, 241
ArsI	GACNNNNNNTTYG	2 cut(s)	543, 575
AspLEI	GCGC	1 cut(s)	327
AspS9I	GGNCC	1 cut(s)	528
AsuHPI	GGTGA	1 cut(s)	61
BaeGI	GKGCMC	1 cut(s)	463
BalI	TGGCCA	1 cut(s)	66
BbvI	GCAGC	1 cut(s)	590
BciT130I	CCWGG	1 cut(s)	130
BclI	TGATCA	1 cut(s)	319
BcoDI	GTCTC	1 cut(s)	302
BfoI	RGCGCY	1 cut(s)	328
BisI	GCNGC	1 cut(s)	604
BlsI	GCNGC	1 cut(s)	605
Bme1390I	CCNGG	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	528
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	3 cut(s)	145, 229, 259
BpuEI	CTTGAG	1 cut(s)	592
BsaI	GGTCTC	1 cut(s)	302
BsaJI	CCNNGG	2 cut(s)	129, 524
BsaWI	WCCGGW	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	2 cut(s)	129, 524
BseGI	GGATG	1 cut(s)	274
BseNI	ACTGG	1 cut(s)	117
BseRI	GAGGAG	1 cut(s)	28
BseSI	GKGCMC	1 cut(s)	463
BseXI	GCAGC	1 cut(s)	590
BshFI	GGCC	3 cut(s)	66, 316, 529
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	523
BsmAI	GTCTC	1 cut(s)	302
BsmFI	GGGAC	1 cut(s)	523
BsnI	GGCC	3 cut(s)	66, 316, 529
Bso31I	GGTCTC	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	463
Bsp143I	GATC	6 cut(s)	3, 226, 319, 380, 502, 580
BspACI	CCGC	2 cut(s)	44, 484
BspANI	GGCC	3 cut(s)	66, 316, 529
BspPI	GGATC	3 cut(s)	375, 497, 588
BspTNI	GGTCTC	1 cut(s)	302
BsrBI	CCGCTC	1 cut(s)	486
BsrI	ACTGG	1 cut(s)	117
BssECI	CCNNGG	2 cut(s)	129, 524
BssMI	GATC	6 cut(s)	3, 226, 319, 380, 502, 580
BssT1I	CCWWGG	1 cut(s)	524
Bst2UI	CCWGG	1 cut(s)	130
Bst4CI	ACNGT	1 cut(s)	389
Bst6I	CTCTTC	1 cut(s)	80
BstDEI	CTNAG	2 cut(s)	182, 494
BstEII	GGTNACC	1 cut(s)	49
BstF5I	GGATG	1 cut(s)	274
BstH2I	RGCGCY	1 cut(s)	328
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	6 cut(s)	6, 229, 322, 383, 505, 583
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	6 cut(s)	3, 226, 319, 380, 502, 580
BstMWI	GCNNNNNNNGC	2 cut(s)	322, 609
BstNI	CCWGG	1 cut(s)	130
BstPI	GGTNACC	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	128
BstSLI	GKGCMC	1 cut(s)	463
BstV1I	GCAGC	1 cut(s)	590
BstX2I	RGATCY	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	380
BsuRI	GGCC	3 cut(s)	66, 316, 529
BtsCI	GGATG	1 cut(s)	274
CfoI	GCGC	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	528
Csp6I	GTAC	1 cut(s)	374
CviJI	RGCY	8 cut(s)	66, 235, 316, 500, 529, 548, 568, 612
CviKI_1	RGCY	8 cut(s)	66, 235, 316, 500, 529, 548, 568, 612
CviQI	GTAC	1 cut(s)	374
DdeI	CTNAG	2 cut(s)	182, 494
DpnI	GATC	6 cut(s)	5, 228, 321, 382, 504, 582
DpnII	GATC	6 cut(s)	3, 226, 319, 380, 502, 580
EaeI	YGGCCR	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
EciI	GGCGGA	1 cut(s)	59
Eco130I	CCWWGG	1 cut(s)	524
Eco147I	AGGCCT	1 cut(s)	316
Eco31I	GGTCTC	1 cut(s)	302
Eco57I	CTGAAG	1 cut(s)	387
Eco91I	GGTNACC	1 cut(s)	49
EcoO65I	GGTNACC	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	524
ErhI	CCWWGG	1 cut(s)	524
FalI	AAGNNNNNCTT	2 cut(s)	436, 468
FaqI	GGGAC	1 cut(s)	523
FbaI	TGATCA	1 cut(s)	319
FblI	GTMKAC	1 cut(s)	448
Fnu4HI	GCNGC	1 cut(s)	604
FokI	GGATG	1 cut(s)	281
Fsp4HI	GCNGC	1 cut(s)	604
GlaI	GCGC	1 cut(s)	326
GluI	GCNGC	1 cut(s)	604
HaeII	RGCGCY	1 cut(s)	328
HaeIII	GGCC	3 cut(s)	66, 316, 529
HapII	CCGG	1 cut(s)	54
HhaI	GCGC	1 cut(s)	327
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HindIII	AAGCTT	1 cut(s)	610
HinfI	GANTC	3 cut(s)	59, 470, 477
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	1 cut(s)	449
Hpy188I	TCNGA	3 cut(s)	8, 304, 573
Hpy188III	TCNNGA	3 cut(s)	224, 474, 562
Hpy8I	GTNNAC	1 cut(s)	449
HpyAV	CCTTC	2 cut(s)	3, 92
HpyCH4III	ACNGT	1 cut(s)	389
HpyCH4V	TGCA	4 cut(s)	175, 220, 350, 362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	322, 609
HpyF3I	CTNAG	2 cut(s)	182, 494
HspAI	GCGC	1 cut(s)	325
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	6 cut(s)	3, 226, 319, 380, 502, 580
Lsp1109I	GCAGC	1 cut(s)	590
LweI	GCATC	3 cut(s)	145, 229, 259
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	6 cut(s)	5, 228, 321, 382, 504, 582
MbiI	CCGCTC	1 cut(s)	486
MboI	GATC	6 cut(s)	3, 226, 319, 380, 502, 580
MboII	GAAGA	6 cut(s)	97, 150, 161, 164, 197, 472
MflI	RGATCY	1 cut(s)	380
MhlI	GDGCHC	1 cut(s)	463
MlsI	TGGCCA	1 cut(s)	66
MluCI	AATT	5 cut(s)	120, 177, 241, 465, 594
MluNI	TGGCCA	1 cut(s)	66
MnlI	CCTC	7 cut(s)	6, 9, 40, 81, 259, 338, 558
Mox20I	TGGCCA	1 cut(s)	66
MscI	TGGCCA	1 cut(s)	66
MseI	TTAA	2 cut(s)	513, 615
Msp20I	TGGCCA	1 cut(s)	66
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	130
MvaI	CCWGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	2 cut(s)	322, 609
NdeII	GATC	6 cut(s)	3, 226, 319, 380, 502, 580
NmuCI	GTSAC	1 cut(s)	49
PceI	AGGCCT	1 cut(s)	316
PfeI	GAWTC	3 cut(s)	59, 470, 477
PkrI	GCNGC	1 cut(s)	605
Psp6I	CCWGG	1 cut(s)	128
PspEI	GGTNACC	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	128
PspPI	GGNCC	1 cut(s)	528
PsuI	RGATCY	1 cut(s)	380
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
SaqAI	TTAA	2 cut(s)	513, 615
SatI	GCNGC	1 cut(s)	604
Sau3AI	GATC	6 cut(s)	3, 226, 319, 380, 502, 580
Sau96I	GGNCC	1 cut(s)	528
ScrFI	CCNGG	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	463
SfaNI	GCATC	3 cut(s)	145, 229, 259
SmlI	CTYRAG	1 cut(s)	607
SmoI	CTYRAG	1 cut(s)	607
Sse9I	AATT	5 cut(s)	120, 177, 241, 465, 594
SseBI	AGGCCT	1 cut(s)	316
SsiI	CCGC	2 cut(s)	44, 484
StuI	AGGCCT	1 cut(s)	316
StyD4I	CCNGG	1 cut(s)	128
StyI	CCWWGG	1 cut(s)	524
TaaI	ACNGT	1 cut(s)	389
TasI	AATT	5 cut(s)	120, 177, 241, 465, 594
TfiI	GAWTC	3 cut(s)	59, 470, 477
Tru1I	TTAA	2 cut(s)	513, 615
Tru9I	TTAA	2 cut(s)	513, 615
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	1 cut(s)	603
Tsp45I	GTSAC	1 cut(s)	49
XapI	RAATTY	3 cut(s)	120, 177, 241
XmiI	GTMKAC	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.