Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001412

Physical Location & Seq

Genomic Coordinates Reverse (-)

50932811 .. 50935456

Gene Structure 2646 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00202700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGCTTATAATTGCGGAATCTGAAGTGCCGAGATCCCGACCTCGATCTAAAATTAAAGTAACAGCTCTGAATCTTGAGCCCGGCCTCGATCTGAGATTGGCAGAGTCGAAGAAATTAAAGAGGCTCCAAATCCTGAGCTCCTTCTCCAGGGCTCAACAGCTAGCTCTGGTCTTCTCCACCCTCTGCTCCTCAACCAGCCGATTCAATCTCCGATCACGAAGACAACGGCTTACCAGAGGCTACAATTTGGGGTTGTTGACGGTCTCCGTCAAACCCTTGCAGTCCGATTTGGTCAAAAAGCTTCTCTTCCAGATCGGGAACAGAAACCTGTTGTGTGAAGGTGCAGAACTACTGGATAAAATTTTTTCCAGGGGTGGAAGATACACAGAAGAAGATGCTAAAGTTATTGTTGTGCAAATTTTAAGTGTTATTGCCTATTGTCATCTTCAAGGTGTTGTGCATCGTGATCTAAAGCCAGAGAATTTTCTTTTTGCCACAAGTGAAGAGGATGCTTCAGTGAGGGTTGTTGATTTTGGTGTCTCCGATTTTATAAGGCCTGGTCTTGGTGCAAAGATTGAGAGAGAGTCCAAGCTGAAGCTCAATGACTTTCACAAGGTTAGGCCATTCAATATTGTGGAATTGTTAGGTGATAACATAGGATGCATGAGATTACTTATTCATATGAGTTTCTTCCTGTACTTACATGGCATTGATAGGCATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

241

Amino Acids

27.39

Weight (kDa)

9.81

Isoelectric Point (pI)

50.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	112 - 186	1.1e-17	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49370 AT5G24430
fragaria_vesca	FvH4_7g32610 FvH4_7g32610
malus_domestica	MD01G1227200.v1.1 MD07G1297500.v1.1
prunus_persica	Prupe.2G317200_v2.0.a1 Prupe.2G317200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0382501 RchiOBHm_Chr2g0138551 RchiOBHm_Chr2g0138561 RchiOBHm_Chr2g0161821 RchiOBHm_Chr6g0303421
rosa_laevigata	RLG00000007574 RLG00000010752 RLG00000023924 RLG00000026171 RLG00000031079 RLG00000034979 RLG00000035703 RLG00000036307
rosa_multiflora	Rmu_sc0000110.1_g000053 Rmu_sc0000110.1_g000055 Rmu_sc0003696.1_g000002 Rmu_sc0029402.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111900 Rroxscaffold_4G00278000 Rroxscaffold_7G00202700
rosa_rugosa	Rorug01G0435000
rosa_samantha	Rh1AG262900 Rh1AG460000 Rh1BG182300 Rh1BG416200 Rh1CG430000 Rh1DG212400 Rh1DG448600 Rh2AG553600 Rh2BG637900 Rh4AG140900 Rh4CG147700 Rh4CG147800 Rh5CG368300 Rh5CG374200 Rh6AG435500 Rh6CG169600 Rh6CG190900 Rh6DG161600 Rh7BG358800 Rh7CG197800 Rh7CG451800
rosa_wichuraiana	Rw1G001490 Rw1G041160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	8, 551
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	1 cut(s)	27
AcsI	RAATTY	3 cut(s)	360, 417, 481
AcuI	CTGAAG	3 cut(s)	42, 498, 614
AfaI	GTAC	1 cut(s)	698
AfiI	CCNNNNNNNGG	2 cut(s)	147, 563
AgsI	TTSAA	3 cut(s)	205, 449, 628
AjnI	CCWGG	3 cut(s)	146, 368, 556
AluBI	AGCT	7 cut(s)	65, 138, 160, 164, 301, 592, 598
AluI	AGCT	7 cut(s)	65, 138, 160, 164, 301, 592, 598
Alw21I	GWGCWC	1 cut(s)	140
Alw26I	GTCTC	2 cut(s)	268, 544
AlwI	GGATC	1 cut(s)	27
AoxI	GGCC	3 cut(s)	82, 554, 620
ApoI	RAATTY	3 cut(s)	360, 417, 481
AsuC2I	CCSGG	1 cut(s)	81
AsuHPI	GGTGA	1 cut(s)	659
AsuNHI	GCTAGC	1 cut(s)	160
BanII	GRGCYC	3 cut(s)	81, 140, 154
BbsI	GAAGAC	2 cut(s)	163, 226
Bbv12I	GWGCWC	1 cut(s)	140
BceAI	ACGGC	1 cut(s)	242
BciT130I	CCWGG	3 cut(s)	148, 370, 558
BcnI	CCSGG	1 cut(s)	81
BcoDI	GTCTC	2 cut(s)	268, 544
BfaI	CTAG	1 cut(s)	161
Bme1390I	CCNGG	4 cut(s)	81, 148, 370, 558
BmiI	GGNNCC	1 cut(s)	125
BmrFI	CCNGG	4 cut(s)	81, 148, 370, 558
BmsI	GCATC	4 cut(s)	385, 469, 499, 650
BmtI	GCTAGC	1 cut(s)	164
BpiI	GAAGAC	2 cut(s)	163, 226
BpmI	CTGGAG	1 cut(s)	130
Bpu10I	CCTNAGC	1 cut(s)	134
BpuEI	CTTGAG	1 cut(s)	95
BpuMI	CCSGG	1 cut(s)	81
BsaI	GGTCTC	1 cut(s)	268
BsaJI	CCNNGG	2 cut(s)	147, 369
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 563
Bse1I	ACTGG	1 cut(s)	357
BseBI	CCWGG	3 cut(s)	148, 370, 558
BseDI	CCNNGG	2 cut(s)	147, 369
BseGI	GGATG	2 cut(s)	514, 665
BseLI	CCNNNNNNNGG	2 cut(s)	147, 563
BseMII	CTCAG	2 cut(s)	83, 125
BseNI	ACTGG	1 cut(s)	357
BseRI	GAGGAG	1 cut(s)	178
BsgI	GTGCAG	1 cut(s)	363
BshFI	GGCC	3 cut(s)	84, 556, 622
BsiHKAI	GWGCWC	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	81
BslI	CCNNNNNNNGG	2 cut(s)	147, 563
BsmAI	GTCTC	2 cut(s)	268, 544
BsnI	GGCC	3 cut(s)	84, 556, 622
Bso31I	GGTCTC	1 cut(s)	268
Bsp1286I	GDGCHC	3 cut(s)	81, 140, 154
Bsp143I	GATC	6 cut(s)	32, 44, 88, 212, 312, 466
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	3 cut(s)	84, 556, 622
BspCNI	CTCAG	2 cut(s)	84, 126
BspLI	GGNNCC	1 cut(s)	125
BspOI	GCTAGC	1 cut(s)	164
BspPI	GGATC	1 cut(s)	27
BspTNI	GGTCTC	1 cut(s)	268
BsrI	ACTGG	1 cut(s)	357
BssECI	CCNNGG	2 cut(s)	147, 369
BssMI	GATC	6 cut(s)	32, 44, 88, 212, 312, 466
Bst2UI	CCWGG	3 cut(s)	148, 370, 558
Bst4CI	ACNGT	1 cut(s)	262
Bst6I	CTCTTC	2 cut(s)	311, 498
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	2 cut(s)	92, 134
BstENI	CCTNNNNNAGG	1 cut(s)	145
BstF5I	GGATG	2 cut(s)	514, 665
BstKTI	GATC	6 cut(s)	35, 47, 91, 215, 315, 469
BstMAI	GTCTC	2 cut(s)	268, 544
BstMBI	GATC	6 cut(s)	32, 44, 88, 212, 312, 466
BstNI	CCWGG	3 cut(s)	148, 370, 558
BstSCI	CCNGG	4 cut(s)	79, 146, 368, 556
BstV2I	GAAGAC	2 cut(s)	163, 226
BstX2I	RGATCY	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	32
BsuRI	GGCC	3 cut(s)	84, 556, 622
BtsCI	GGATG	2 cut(s)	514, 665
BtsIMutI	CAGTG	1 cut(s)	522
Cac8I	GCNNGC	1 cut(s)	162
Csp6I	GTAC	1 cut(s)	697
CviAII	CATG	2 cut(s)	664, 704
CviQI	GTAC	1 cut(s)	697
DdeI	CTNAG	2 cut(s)	92, 134
DpnI	GATC	6 cut(s)	34, 46, 90, 214, 314, 468
DpnII	GATC	6 cut(s)	32, 44, 88, 212, 312, 466
Eam1104I	CTCTTC	2 cut(s)	311, 498
EarI	CTCTTC	2 cut(s)	311, 498
Ecl136II	GAGCTC	1 cut(s)	138
Eco147I	AGGCCT	1 cut(s)	556
Eco24I	GRGCYC	3 cut(s)	81, 140, 154
Eco31I	GGTCTC	1 cut(s)	268
Eco53kI	GAGCTC	1 cut(s)	138
Eco57I	CTGAAG	3 cut(s)	42, 498, 614
EcoICRI	GAGCTC	1 cut(s)	138
EcoNI	CCTNNNNNAGG	1 cut(s)	145
EcoRII	CCWGG	3 cut(s)	146, 368, 556
EcoT22I	ATGCAT	1 cut(s)	665
EcoT38I	GRGCYC	3 cut(s)	81, 140, 154
FaeI	CATG	2 cut(s)	667, 707
FaiI	YATR	8 cut(s)	8, 551, 656, 665, 681, 683, 705, 720
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FatI	CATG	2 cut(s)	663, 703
FauNDI	CATATG	1 cut(s)	681
FokI	GGATG	2 cut(s)	521, 672
FriOI	GRGCYC	3 cut(s)	81, 140, 154
FspBI	CTAG	1 cut(s)	161
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	3 cut(s)	84, 556, 622
HapII	CCGG	1 cut(s)	81
Hin1II	CATG	2 cut(s)	667, 707
HincII	GTYRAC	1 cut(s)	258
HindII	GTYRAC	1 cut(s)	258
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	5 cut(s)	17, 70, 104, 201, 584
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	1 cut(s)	659
Hpy166II	GTNNAC	1 cut(s)	258
Hpy188I	TCNGA	6 cut(s)	22, 69, 93, 212, 286, 544
Hpy188III	TCNNGA	7 cut(s)	36, 74, 133, 216, 310, 316, 464
Hpy8I	GTNNAC	1 cut(s)	258
HpyAV	CCTTC	2 cut(s)	151, 332
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4V	TGCA	6 cut(s)	280, 344, 415, 460, 569, 663
HpyF3I	CTNAG	2 cut(s)	92, 134
Hsp92II	CATG	2 cut(s)	667, 707
Kzo9I	GATC	6 cut(s)	32, 44, 88, 212, 312, 466
LmnI	GCTCC	3 cut(s)	129, 143, 191
LweI	GCATC	4 cut(s)	385, 469, 499, 650
MaeI	CTAG	1 cut(s)	161
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	6 cut(s)	34, 46, 90, 214, 314, 468
MboI	GATC	6 cut(s)	32, 44, 88, 212, 312, 466
MflI	RGATCY	1 cut(s)	32
MhlI	GDGCHC	3 cut(s)	81, 140, 154
MluCI	AATT	9 cut(s)	9, 51, 113, 244, 360, 417, 481, 638, 721
MlyI	GAGTC	2 cut(s)	113, 593
MnlI	CCTC	8 cut(s)	51, 95, 114, 191, 199, 230, 499, 513
Mph1103I	ATGCAT	1 cut(s)	665
MseI	TTAA	4 cut(s)	54, 116, 422, 724
MspI	CCGG	1 cut(s)	81
MspR9I	CCNGG	4 cut(s)	81, 148, 370, 558
MvaI	CCWGG	3 cut(s)	148, 370, 558
NciI	CCSGG	1 cut(s)	81
NdeI	CATATG	1 cut(s)	681
NdeII	GATC	6 cut(s)	32, 44, 88, 212, 312, 466
NheI	GCTAGC	1 cut(s)	160
NlaIII	CATG	2 cut(s)	667, 707
NlaIV	GGNNCC	1 cut(s)	125
NmeAIII	GCCGAG	1 cut(s)	54
NsiI	ATGCAT	1 cut(s)	665
PceI	AGGCCT	1 cut(s)	556
PfeI	GAWTC	3 cut(s)	17, 70, 201
PleI	GAGTC	2 cut(s)	112, 592
PpsI	GAGTC	2 cut(s)	112, 592
PsiI	TTATAA	2 cut(s)	8, 551
Psp124BI	GAGCTC	1 cut(s)	140
Psp6I	CCWGG	3 cut(s)	146, 368, 556
PspGI	CCWGG	3 cut(s)	146, 368, 556
PspN4I	GGNNCC	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	32
RsaI	GTAC	1 cut(s)	698
RsaNI	GTAC	1 cut(s)	697
SacI	GAGCTC	1 cut(s)	140
SaqAI	TTAA	4 cut(s)	54, 116, 422, 724
Sau3AI	GATC	6 cut(s)	32, 44, 88, 212, 312, 466
SchI	GAGTC	2 cut(s)	113, 593
ScrFI	CCNGG	4 cut(s)	81, 148, 370, 558
SduI	GDGCHC	3 cut(s)	81, 140, 154
SfaNI	GCATC	4 cut(s)	385, 469, 499, 650
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	9 cut(s)	9, 51, 113, 244, 360, 417, 481, 638, 721
SseBI	AGGCCT	1 cut(s)	556
SsiI	CCGC	1 cut(s)	14
SspI	AATATT	1 cut(s)	631
SspMI	CTAG	1 cut(s)	161
SstI	GAGCTC	1 cut(s)	140
StuI	AGGCCT	1 cut(s)	556
StyD4I	CCNGG	4 cut(s)	79, 146, 368, 556
TaaI	ACNGT	1 cut(s)	262
TaqI	TCGA	3 cut(s)	43, 87, 107
TasI	AATT	9 cut(s)	9, 51, 113, 244, 360, 417, 481, 638, 721
TatI	WGTACW	1 cut(s)	696
TfiI	GAWTC	3 cut(s)	17, 70, 201
Tru1I	TTAA	4 cut(s)	54, 116, 422, 724
Tru9I	TTAA	4 cut(s)	54, 116, 422, 724
TscAI	CASTG	1 cut(s)	522
TspDTI	ATGAA	1 cut(s)	668
TspGWI	ACGGA	1 cut(s)	256
TspRI	CASTG	1 cut(s)	522
XagI	CCTNNNNNAGG	1 cut(s)	145
XapI	RAATTY	3 cut(s)	360, 417, 481
XspI	CTAG	1 cut(s)	161
Zsp2I	ATGCAT	1 cut(s)	665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.