Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001412

Physical Location & Seq

Genomic Coordinates Reverse (-)

67774227 .. 67779090

Gene Structure 4864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG460000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1782 bp

ATGGGGCATTGCTGCAGCAAAAGCGCCGCCGTTTCGGTGGCCAACAACAACCACGACCACCCGACCCCCGCCGCCGCATCCGCCGTCGCCGTCCAGCAGTCTAAACACCCGCCGGTGCCGCCGAGCCCGGTCGCCGGCGATGTGAAGAACACTCCGTCTCACTCATTTACGGCGAGTCCGTTCCCGAGCCCGCTCCCGGCCGGAGTGGCGCCGTCGCCGGCGAGGACGCCGGGGAGGAAGTTCCGGTGGCCGTTGCCGCCTCCGTCGCCGGCGAAGCCGATCATGGCCGCGTTTCGGCGGCGGAGGGAGGCGAAGCCGAAGGACGGGCCCATACCGGAGGAGAATAATCACCAGGGCGGCGAAGAAGAAGGAGAGAGGGGGCTGGATAAGAGCTTTGGGTATGGGAAGAACTTTGGGGCGAAATTTGAATTGGGGAAGGAGGTGGGGCGAGGGCATTTTGGTCATACTTGCTCGGCCAAGGGAAAGAAGGGAGAGCTTAAGGGTCAGCCTGTGGCTGTCAAGATCATATCCAAAGCAAAGATGACAACAGCAATAGCTATTGAAGATGTCCGTAGAGAGGTGAAAATACTGAAAGCATTATCTGGACATAAGAATCTGGTCAAATTTTATGATGCATTTGAGGATGCCAATAATGTCTACATAGTCATGGAGTTGTGTGAAGGTGGAGAACTACTGGATAAAATTTTGTCCAGGGGTGGAAGATACACAGAAGAAGATGCTAAAGTTATTGTTGTGCAAATTTTAAGTGTTGTTGCCTACTGTCATCTTCAAGGTGTTGTGCATCGCGATCTAAAGCCAGAGAATTTTCTTTTTGCCACTAGAGAAGAGGATGCTTCAATGAGGGTTATTGATTTTGGTCTCTCCGATTTTATTAGGCCTGATCAGCGCCTCAACGATATTGTTGGTAGTGCATACTATGTTGCACCTGAAGTGCTACATAGATCCTACAGTGTTGAAGCAGATATGTGGAGCATAGGTGTAATAACATATATATTGCTATGTGGAAGTAGACCTTTCTGGGCACGAACTGAATCAGGAATCTTCCGCTCGGTGCTAAGAGCTGATCCTAACTTTAATGATACACCTTGGCCCACAGTGTCCCCAGAAGCCAAAGATTTTGTCAAGAGGCTTCTGAACAAGGATCACAGAAAAAGAATGACTGCTGCTCAAGCTTTAACCCACCCATGGCTAAGGGATGAAAGACGAGCTGTGCCTTTAGATTTAGTAATCTACAAGTCGGTTAGGTCATATGTTCGTGCCACACCTTTCAGGCGTGCAGCAATGAAGGCTCTCTCCAAGGCTATAACAGAAGATGAGCTCTACTATCTTAGGGCTCAGTTTACACTCTTGGAACCCAAACATGGATACGTGTCCCTCGATAATTTCAGAACGGCTTTCATGAAAAATTCAACTGATGCCATGAAGGAGTCGAGGGTTCATGACATCATAAATGTGATGGAGCCACTCGCGCACAAGAAATTGGACTTTGAAGAGTTCTGCGTTGCCGCAATAAGTACATATCAGCTAGAAGCTCTTGAAGGGTGGGAGAAGATTGCAAGTACGGCTTTTGAGTGTTTTGAAAGGGAAGGAAACCGGGTCATCTCTGTTGAGGAGTTGGCACAGGAAATGAATCTGGGTCCTACATCTTACTCTCTACTCAGAGACTGGATCAGAACCTCCGACCGAAAACTTAGCTTCCTTGGATACACCAAATTTTTGCATGGTGTGACAATACGTACTTCCAATACTAGACACCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

593

Amino Acids

66.44

Weight (kDa)

9.16

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	142 - 404	1.6e-73	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	143 - 397	3.3e-34	Protein tyrosine and serine/threonine kinase
Kdo	PF06293	217 - 294	2.2e-06	Lipopolysaccharide kinase (Kdo/WaaP) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49370 AT5G24430
fragaria_vesca	FvH4_7g32610 FvH4_7g32610
malus_domestica	MD01G1227200.v1.1 MD07G1297500.v1.1
prunus_persica	Prupe.2G317200_v2.0.a1 Prupe.2G317200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0382501 RchiOBHm_Chr2g0138551 RchiOBHm_Chr2g0138561 RchiOBHm_Chr2g0161821 RchiOBHm_Chr6g0303421
rosa_laevigata	RLG00000007574 RLG00000010752 RLG00000023924 RLG00000026171 RLG00000031079 RLG00000034979 RLG00000035703 RLG00000036307
rosa_multiflora	Rmu_sc0000110.1_g000053 Rmu_sc0000110.1_g000055 Rmu_sc0003696.1_g000002 Rmu_sc0029402.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111900 Rroxscaffold_4G00278000 Rroxscaffold_7G00202700
rosa_rugosa	Rorug01G0435000
rosa_samantha	Rh1AG262900 Rh1AG460000 Rh1BG182300 Rh1BG416200 Rh1CG430000 Rh1DG212400 Rh1DG448600 Rh2AG553600 Rh2BG637900 Rh4AG140900 Rh4CG147700 Rh4CG147800 Rh5CG368300 Rh5CG374200 Rh6AG435500 Rh6CG169600 Rh6CG190900 Rh6DG161600 Rh7BG358800 Rh7CG197800 Rh7CG451800
rosa_wichuraiana	Rw1G001490 Rw1G041160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	115, 208
AccBSI	CCGCTC	2 cut(s)	193, 1068
AccI	GTMKAC	2 cut(s)	657, 1030
AccII	CGCG	3 cut(s)	290, 807, 1490
AclWI	GGATC	4 cut(s)	957, 1079, 1170, 1697
AcoI	YGGCCR	5 cut(s)	39, 198, 248, 285, 474
AcsI	RAATTY	7 cut(s)	422, 623, 702, 759, 823, 1426, 1733
AcuI	CTGAAG	1 cut(s)	969
AcyI	GRCGYC	2 cut(s)	209, 227
AfaI	GTAC	3 cut(s)	1537, 1582, 1759
AfiI	CCNNNNNNNGG	7 cut(s)	134, 196, 294, 323, 577, 1206, 1382
AflII	CTTAAG	1 cut(s)	497
AflIII	ACRYGT	1 cut(s)	1389
AgsI	TTSAA	9 cut(s)	428, 563, 791, 858, 977, 1431, 1511, 1559, 1601
AjnI	CCWGG	2 cut(s)	351, 710
AjuI	GAANNNNNNNTTGG	2 cut(s)	413, 445
Alw21I	GWGCWC	1 cut(s)	1341
Alw26I	GTCTC	3 cut(s)	162, 884, 1677
AlwI	GGATC	4 cut(s)	957, 1079, 1170, 1697
AlwNI	CAGNNNCTG	1 cut(s)	1686
Ama87I	CYCGRG	1 cut(s)	184
AoxI	GGCC	8 cut(s)	39, 198, 248, 285, 326, 474, 896, 1109
ApaI	GGGCCC	1 cut(s)	330
ApeKI	GCWGC	4 cut(s)	12, 15, 1184, 1298
ApoI	RAATTY	7 cut(s)	422, 623, 702, 759, 823, 1426, 1733
ArsI	GACNNNNNNTTYG	2 cut(s)	1125, 1157
AspLEI	GCGC	4 cut(s)	26, 211, 909, 1492
AspS9I	GGNCC	4 cut(s)	326, 327, 1110, 1658
AsuC2I	CCSGG	4 cut(s)	128, 197, 231, 1616
AsuHPI	GGTGA	2 cut(s)	341, 592
AvaI	CYCGRG	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	1658
BaeGI	GKGCMC	2 cut(s)	330, 1045
BalI	TGGCCA	1 cut(s)	41
BanI	GGYRCC	2 cut(s)	115, 208
BanII	GRGCYC	5 cut(s)	128, 191, 330, 1341, 1357
Bbv12I	GWGCWC	1 cut(s)	1341
BbvI	GCAGC	3 cut(s)	27, 1171, 1310
BccI	CCATC	1 cut(s)	1471
BceAI	ACGGC	8 cut(s)	14, 68, 74, 186, 196, 235, 1428, 1599
BciT130I	CCWGG	2 cut(s)	353, 712
BciVI	GTATCC	2 cut(s)	1379, 1718
BclI	TGATCA	1 cut(s)	901
BcnI	CCSGG	4 cut(s)	128, 197, 231, 1616
BcoDI	GTCTC	3 cut(s)	162, 884, 1677
BfaI	CTAG	3 cut(s)	840, 1547, 1770
BfmI	CTRYAG	2 cut(s)	13, 967
BfoI	RGCGCY	3 cut(s)	27, 212, 910
BfrI	CTTAAG	1 cut(s)	497
BfuI	GTATCC	2 cut(s)	1379, 1718
BglI	GCCNNNNNGGC	1 cut(s)	206
Bme1390I	CCNGG	6 cut(s)	128, 197, 231, 353, 712, 1616
Bme18I	GGWCC	1 cut(s)	1658
BmeT110I	CYCGRG	1 cut(s)	184
BmgT120I	GGNCC	4 cut(s)	326, 327, 1110, 1658
BmiI	GGNNCC	6 cut(s)	117, 210, 328, 1374, 1482, 1659
BmrFI	CCNGG	6 cut(s)	128, 197, 231, 353, 712, 1616
BmsI	GCATC	7 cut(s)	86, 622, 634, 727, 811, 841, 1426
Bpu10I	CCTNAGC	1 cut(s)	1211
BpuEI	CTTGAG	1 cut(s)	1173
BpuMI	CCSGG	4 cut(s)	128, 197, 231, 1616
BsaAI	YACGTR	2 cut(s)	1390, 1757
BsaHI	GRCGYC	2 cut(s)	209, 227
BsaI	GGTCTC	1 cut(s)	884
BsaJI	CCNNGG	8 cut(s)	230, 352, 477, 711, 1106, 1205, 1317, 1720
BsaWI	WCCGGW	2 cut(s)	243, 334
BsaXI	ACNNNNNCTCC	2 cut(s)	982, 1012
Bsc4I	CCNNNNNNNGG	7 cut(s)	134, 196, 294, 323, 577, 1206, 1382
Bse118I	RCCGGY	4 cut(s)	112, 134, 217, 268
Bse1I	ACTGG	2 cut(s)	699, 1691
Bse3DI	GCAATG	2 cut(s)	7, 1308
BseBI	CCWGG	2 cut(s)	353, 712
BseDI	CCNNGG	8 cut(s)	230, 352, 477, 711, 1106, 1205, 1317, 1720
BseGI	GGATG	4 cut(s)	77, 649, 856, 1222
BseLI	CCNNNNNNNGG	7 cut(s)	134, 196, 294, 323, 577, 1206, 1382
BseMI	GCAATG	2 cut(s)	7, 1308
BseMII	CTCAG	2 cut(s)	1370, 1693
BseNI	ACTGG	2 cut(s)	699, 1691
BseRI	GAGGAG	2 cut(s)	353, 1646
BseSI	GKGCMC	2 cut(s)	330, 1045
BseX3I	CGGCCG	1 cut(s)	198
BseXI	GCAGC	3 cut(s)	27, 1171, 1310
BsgI	GTGCAG	1 cut(s)	1317
Bsh1236I	CGCG	3 cut(s)	290, 807, 1490
Bsh1285I	CGRYCG	3 cut(s)	132, 201, 1705
BshFI	GGCC	8 cut(s)	41, 200, 250, 287, 328, 476, 898, 1111
BshNI	GGYRCC	2 cut(s)	115, 208
BsiEI	CGRYCG	3 cut(s)	132, 201, 1705
BsiHKAI	GWGCWC	1 cut(s)	1341
BsiHKCI	CYCGRG	1 cut(s)	184
BslFI	GGGAC	2 cut(s)	1105, 1378
BslI	CCNNNNNNNGG	7 cut(s)	134, 196, 294, 323, 577, 1206, 1382
BsmAI	GTCTC	3 cut(s)	162, 884, 1677
BsmBI	CGTCTC	1 cut(s)	162
BsmFI	GGGAC	2 cut(s)	1105, 1378
BsnI	GGCC	8 cut(s)	41, 200, 250, 287, 328, 476, 898, 1111
Bso31I	GGTCTC	1 cut(s)	884
BsoBI	CYCGRG	1 cut(s)	184
Bsp120I	GGGCCC	1 cut(s)	326
Bsp1286I	GDGCHC	6 cut(s)	128, 191, 330, 1045, 1341, 1357
Bsp143I	GATC	8 cut(s)	279, 522, 808, 901, 962, 1084, 1162, 1689
Bsp19I	CCATGG	1 cut(s)	1205
Bsp68I	TCGCGA	1 cut(s)	807
BspANI	GGCC	8 cut(s)	41, 200, 250, 287, 328, 476, 898, 1111
BspCNI	CTCAG	2 cut(s)	1369, 1692
BspFNI	CGCG	3 cut(s)	290, 807, 1490
BspHI	TCATGA	2 cut(s)	1419, 1459
BspLI	GGNNCC	6 cut(s)	117, 210, 328, 1374, 1482, 1659
BspMAI	CTGCAG	1 cut(s)	17
BspPI	GGATC	4 cut(s)	957, 1079, 1170, 1697
BspT107I	GGYRCC	2 cut(s)	115, 208
BspTI	CTTAAG	1 cut(s)	497
BspTNI	GGTCTC	1 cut(s)	884
BsrBI	CCGCTC	2 cut(s)	193, 1068
BsrDI	GCAATG	2 cut(s)	7, 1308
BsrFI	RCCGGY	4 cut(s)	112, 134, 217, 268
BsrI	ACTGG	2 cut(s)	699, 1691
BssAI	RCCGGY	4 cut(s)	112, 134, 217, 268
BssECI	CCNNGG	8 cut(s)	230, 352, 477, 711, 1106, 1205, 1317, 1720
BssMI	GATC	8 cut(s)	279, 522, 808, 901, 962, 1084, 1162, 1689
BssNI	GRCGYC	2 cut(s)	209, 227
BssT1I	CCWWGG	5 cut(s)	477, 1106, 1205, 1317, 1720
Bst2UI	CCWGG	2 cut(s)	353, 712
Bst4CI	ACNGT	3 cut(s)	782, 971, 1117
Bst6I	CTCTTC	2 cut(s)	840, 1506
BstACI	GRCGYC	2 cut(s)	209, 227
BstAFI	CTTAAG	1 cut(s)	497
BstBAI	YACGTR	2 cut(s)	1390, 1757
BstC8I	GCNNGC	5 cut(s)	136, 191, 219, 270, 1296
BstDEI	CTNAG	6 cut(s)	1076, 1211, 1349, 1356, 1679, 1712
BstDSI	CCRYGG	1 cut(s)	1205
BstF5I	GGATG	4 cut(s)	77, 649, 856, 1222
BstFNI	CGCG	3 cut(s)	290, 807, 1490
BstH2I	RGCGCY	3 cut(s)	27, 212, 910
BstHHI	GCGC	4 cut(s)	26, 211, 909, 1492
BstKTI	GATC	8 cut(s)	282, 525, 811, 904, 965, 1087, 1165, 1692
BstMAI	GTCTC	3 cut(s)	162, 884, 1677
BstMBI	GATC	8 cut(s)	279, 522, 808, 901, 962, 1084, 1162, 1689
BstMCI	CGRYCG	3 cut(s)	132, 201, 1705
BstNI	CCWGG	2 cut(s)	353, 712
BstSCI	CCNGG	6 cut(s)	126, 195, 229, 351, 710, 1614
BstSFI	CTRYAG	2 cut(s)	13, 967
BstSLI	GKGCMC	2 cut(s)	330, 1045
BstSNI	TACGTA	1 cut(s)	1757
BstUI	CGCG	3 cut(s)	290, 807, 1490
BstV1I	GCAGC	3 cut(s)	27, 1171, 1310
BstX2I	RGATCY	1 cut(s)	962
BstYI	RGATCY	1 cut(s)	962
BstZI	CGGCCG	1 cut(s)	198
BsuI	GTATCC	2 cut(s)	1379, 1718
BsuRI	GGCC	8 cut(s)	41, 200, 250, 287, 328, 476, 898, 1111
BtgI	CCRYGG	1 cut(s)	1205
BtgZI	GCGATG	2 cut(s)	153, 788
BtsCI	GGATG	4 cut(s)	77, 649, 856, 1222
BtsIMutI	CAGTG	2 cut(s)	976, 1122
BtuMI	TCGCGA	1 cut(s)	807
Cac8I	GCNNGC	5 cut(s)	136, 191, 219, 270, 1296
CaiI	CAGNNNCTG	1 cut(s)	1686
CciI	TCATGA	2 cut(s)	1419, 1459
CfoI	GCGC	4 cut(s)	26, 211, 909, 1492
Cfr10I	RCCGGY	4 cut(s)	112, 134, 217, 268
Cfr13I	GGNCC	4 cut(s)	326, 327, 1110, 1658
CseI	GACGC	1 cut(s)	235
Csp6I	GTAC	3 cut(s)	1536, 1581, 1758
CviAII	CATG	8 cut(s)	283, 667, 1206, 1382, 1420, 1441, 1460, 1742
CviQI	GTAC	3 cut(s)	1536, 1581, 1758
DdeI	CTNAG	6 cut(s)	1076, 1211, 1349, 1356, 1679, 1712
DinI	GGCGCC	1 cut(s)	210
DpnI	GATC	8 cut(s)	281, 524, 810, 903, 964, 1086, 1164, 1691
DpnII	GATC	8 cut(s)	279, 522, 808, 901, 962, 1084, 1162, 1689
EaeI	YGGCCR	5 cut(s)	39, 198, 248, 285, 474
EagI	CGGCCG	1 cut(s)	198
Eam1104I	CTCTTC	2 cut(s)	840, 1506
EarI	CTCTTC	2 cut(s)	840, 1506
EciI	GGCGGA	2 cut(s)	70, 316
Ecl136II	GAGCTC	1 cut(s)	1339
EclXI	CGGCCG	1 cut(s)	198
Eco105I	TACGTA	1 cut(s)	1757
Eco130I	CCWWGG	5 cut(s)	477, 1106, 1205, 1317, 1720
Eco147I	AGGCCT	1 cut(s)	898
Eco24I	GRGCYC	5 cut(s)	128, 191, 330, 1341, 1357
Eco31I	GGTCTC	1 cut(s)	884
Eco47I	GGWCC	1 cut(s)	1658
Eco52I	CGGCCG	1 cut(s)	198
Eco53kI	GAGCTC	1 cut(s)	1339
Eco57I	CTGAAG	1 cut(s)	969
Eco88I	CYCGRG	1 cut(s)	184
EcoICRI	GAGCTC	1 cut(s)	1339
EcoO109I	RGGNCCY	1 cut(s)	1658
EcoRII	CCWGG	2 cut(s)	351, 710
EcoT14I	CCWWGG	5 cut(s)	477, 1106, 1205, 1317, 1720
EcoT22I	ATGCAT	1 cut(s)	637
EcoT38I	GRGCYC	5 cut(s)	128, 191, 330, 1341, 1357
EgeI	GGCGCC	1 cut(s)	210
EheI	GGCGCC	1 cut(s)	210
ErhI	CCWWGG	5 cut(s)	477, 1106, 1205, 1317, 1720
Esp3I	CGTCTC	1 cut(s)	162
FaeI	CATG	8 cut(s)	286, 670, 1209, 1385, 1423, 1444, 1463, 1745
FalI	AAGNNNNNCTT	4 cut(s)	1018, 1050, 1570, 1602
FaqI	GGGAC	2 cut(s)	1105, 1378
FatI	CATG	8 cut(s)	282, 666, 1205, 1381, 1419, 1440, 1459, 1741
FauI	CCCGC	3 cut(s)	76, 117, 198
FauNDI	CATATG	1 cut(s)	1270
FbaI	TGATCA	1 cut(s)	901
FblI	GTMKAC	2 cut(s)	657, 1030
FokI	GGATG	4 cut(s)	64, 656, 863, 1229
FriOI	GRGCYC	5 cut(s)	128, 191, 330, 1341, 1357
FspBI	CTAG	3 cut(s)	840, 1547, 1770
GlaI	GCGC	4 cut(s)	25, 210, 908, 1491
HaeII	RGCGCY	3 cut(s)	27, 212, 910
HaeIII	GGCC	8 cut(s)	41, 200, 250, 287, 328, 476, 898, 1111
HgaI	GACGC	1 cut(s)	235
HhaI	GCGC	4 cut(s)	26, 211, 909, 1492
Hin1I	GRCGYC	2 cut(s)	209, 227
Hin1II	CATG	8 cut(s)	286, 670, 1209, 1385, 1423, 1444, 1463, 1745
Hin6I	GCGC	4 cut(s)	24, 209, 907, 1490
HinP1I	GCGC	4 cut(s)	24, 209, 907, 1490
HindIII	AAGCTT	1 cut(s)	1191
HinfI	GANTC	6 cut(s)	175, 613, 1052, 1059, 1448, 1651
HphI	GGTGA	2 cut(s)	341, 592
Hpy166II	GTNNAC	3 cut(s)	658, 1031, 1362
Hpy188I	TCNGA	6 cut(s)	886, 1155, 1409, 1682, 1694, 1702
Hpy188III	TCNNGA	9 cut(s)	184, 520, 603, 806, 1056, 1144, 1420, 1460, 1556
Hpy8I	GTNNAC	3 cut(s)	658, 1031, 1362
Hpy99I	CGWCG	3 cut(s)	89, 217, 268
HpyAV	CCTTC	9 cut(s)	313, 362, 430, 481, 674, 1300, 1438, 1553, 1601
HpyCH4III	ACNGT	3 cut(s)	782, 971, 1117
HpyCH4IV	ACGT	2 cut(s)	1389, 1756
HpyCH4V	TGCA	9 cut(s)	15, 635, 757, 802, 932, 944, 1298, 1577, 1741
HpyF3I	CTNAG	6 cut(s)	1076, 1211, 1349, 1356, 1679, 1712
HpySE526I	ACGT	2 cut(s)	1389, 1756
Hsp92I	GRCGYC	2 cut(s)	209, 227
Hsp92II	CATG	8 cut(s)	286, 670, 1209, 1385, 1423, 1444, 1463, 1745
HspAI	GCGC	4 cut(s)	24, 209, 907, 1490
KasI	GGCGCC	1 cut(s)	208
KroI	GCCGGC	3 cut(s)	134, 217, 268
KroNI	GCCGGC	3 cut(s)	136, 219, 270
Ksp22I	TGATCA	1 cut(s)	901
Kzo9I	GATC	8 cut(s)	279, 522, 808, 901, 962, 1084, 1162, 1689
LmnI	GCTCC	3 cut(s)	198, 990, 1480
Lsp1109I	GCAGC	3 cut(s)	27, 1171, 1310
LweI	GCATC	7 cut(s)	86, 622, 634, 727, 811, 841, 1426
MaeI	CTAG	3 cut(s)	840, 1547, 1770
MaeII	ACGT	2 cut(s)	1389, 1756
MaeIII	GTNAC	1 cut(s)	1747
MalI	GATC	8 cut(s)	281, 524, 810, 903, 964, 1086, 1164, 1691
MbiI	CCGCTC	2 cut(s)	193, 1068
MboI	GATC	8 cut(s)	279, 522, 808, 901, 962, 1084, 1162, 1689
MflI	RGATCY	1 cut(s)	962
MhlI	GDGCHC	6 cut(s)	128, 191, 330, 1045, 1341, 1357
MlsI	TGGCCA	1 cut(s)	41
MluNI	TGGCCA	1 cut(s)	41
Mly113I	GGCGCC	1 cut(s)	209
MlyI	GAGTC	2 cut(s)	184, 1457
MmeI	TCCRAC	1 cut(s)	1725
Mox20I	TGGCCA	1 cut(s)	41
Mph1103I	ATGCAT	1 cut(s)	637
MreI	CGCCGGCG	3 cut(s)	134, 217, 268
MroNI	GCCGGC	3 cut(s)	134, 217, 268
MscI	TGGCCA	1 cut(s)	41
MseI	TTAA	4 cut(s)	498, 764, 1095, 1196
MslI	CAYNNNNRTG	2 cut(s)	665, 1472
Msp20I	TGGCCA	1 cut(s)	41
MspCI	CTTAAG	1 cut(s)	497
MspR9I	CCNGG	6 cut(s)	128, 197, 231, 353, 712, 1616
MvaI	CCWGG	2 cut(s)	353, 712
MvnI	CGCG	3 cut(s)	290, 807, 1490
NaeI	GCCGGC	3 cut(s)	136, 219, 270
NarI	GGCGCC	1 cut(s)	209
NciI	CCSGG	4 cut(s)	128, 197, 231, 1616
NcoI	CCATGG	1 cut(s)	1205
NdeI	CATATG	1 cut(s)	1270
NdeII	GATC	8 cut(s)	279, 522, 808, 901, 962, 1084, 1162, 1689
NgoMIV	GCCGGC	3 cut(s)	134, 217, 268
NlaIII	CATG	8 cut(s)	286, 670, 1209, 1385, 1423, 1444, 1463, 1745
NlaIV	GGNNCC	6 cut(s)	117, 210, 328, 1374, 1482, 1659
NmeAIII	GCCGAG	2 cut(s)	147, 452
NmuCI	GTSAC	1 cut(s)	1747
NruI	TCGCGA	1 cut(s)	807
NsiI	ATGCAT	1 cut(s)	637
PagI	TCATGA	2 cut(s)	1419, 1459
PceI	AGGCCT	1 cut(s)	898
PcsI	WCGNNNNNNNCGW	2 cut(s)	176, 1395
PdiI	GCCGGC	3 cut(s)	136, 219, 270
PfeI	GAWTC	4 cut(s)	613, 1052, 1059, 1651
PleI	GAGTC	2 cut(s)	183, 1456
PluTI	GGCGCC	1 cut(s)	212
PpsI	GAGTC	2 cut(s)	183, 1456
Ppu21I	YACGTR	2 cut(s)	1390, 1757
PpuMI	RGGWCCY	1 cut(s)	1658
Psp124BI	GAGCTC	1 cut(s)	1341
Psp5II	RGGWCCY	1 cut(s)	1658
Psp6I	CCWGG	2 cut(s)	351, 710
PspGI	CCWGG	2 cut(s)	351, 710
PspN4I	GGNNCC	6 cut(s)	117, 210, 328, 1374, 1482, 1659
PspOMI	GGGCCC	1 cut(s)	326
PspPI	GGNCC	4 cut(s)	326, 327, 1110, 1658
PspPPI	RGGWCCY	1 cut(s)	1658
PstI	CTGCAG	1 cut(s)	17
PstNI	CAGNNNCTG	1 cut(s)	1686
PsuI	RGATCY	1 cut(s)	962
RruI	TCGCGA	1 cut(s)	807
RsaI	GTAC	3 cut(s)	1537, 1582, 1759
RsaNI	GTAC	3 cut(s)	1536, 1581, 1758
RseI	CAYNNNNRTG	2 cut(s)	665, 1472
SacI	GAGCTC	1 cut(s)	1341
SaqAI	TTAA	4 cut(s)	498, 764, 1095, 1196
Sau3AI	GATC	8 cut(s)	279, 522, 808, 901, 962, 1084, 1162, 1689
Sau96I	GGNCC	4 cut(s)	326, 327, 1110, 1658
SchI	GAGTC	2 cut(s)	184, 1457
ScrFI	CCNGG	6 cut(s)	128, 197, 231, 353, 712, 1616
SduI	GDGCHC	6 cut(s)	128, 191, 330, 1045, 1341, 1357
SfaNI	GCATC	7 cut(s)	86, 622, 634, 727, 811, 841, 1426
SfcI	CTRYAG	2 cut(s)	13, 967
SfoI	GGCGCC	1 cut(s)	210
SgrAI	CRCCGGYG	4 cut(s)	112, 134, 217, 268
SinI	GGWCC	1 cut(s)	1658
SmiMI	CAYNNNNRTG	2 cut(s)	665, 1472
SmlI	CTYRAG	2 cut(s)	497, 1188
SmoI	CTYRAG	2 cut(s)	497, 1188
SnaBI	TACGTA	1 cut(s)	1757
SseBI	AGGCCT	1 cut(s)	898
SspDI	GGCGCC	1 cut(s)	208
SspMI	CTAG	3 cut(s)	840, 1547, 1770
SstI	GAGCTC	1 cut(s)	1341
StuI	AGGCCT	1 cut(s)	898
StyD4I	CCNGG	6 cut(s)	126, 195, 229, 351, 710, 1614
StyI	CCWWGG	5 cut(s)	477, 1106, 1205, 1317, 1720
TaaI	ACNGT	3 cut(s)	782, 971, 1117
TaiI	ACGT	2 cut(s)	1392, 1759
TaqI	TCGA	2 cut(s)	1398, 1451
TaqII	GACCGA	1 cut(s)	1719
TatI	WGTACW	1 cut(s)	1535
TauI	GCSGC	9 cut(s)	29, 74, 77, 121, 259, 290, 301, 360, 1529
TfiI	GAWTC	4 cut(s)	613, 1052, 1059, 1651
Tru1I	TTAA	4 cut(s)	498, 764, 1095, 1196
Tru9I	TTAA	4 cut(s)	498, 764, 1095, 1196
TscAI	CASTG	2 cut(s)	976, 1122
TseFI	GTSAC	1 cut(s)	1747
TseI	GCWGC	4 cut(s)	12, 15, 1184, 1298
Tsp45I	GTSAC	1 cut(s)	1747
TspDTI	ATGAA	7 cut(s)	1233, 1319, 1408, 1436, 1448, 1457, 1664
TspGWI	ACGGA	4 cut(s)	144, 168, 252, 560
TspRI	CASTG	2 cut(s)	976, 1122
Vha464I	CTTAAG	1 cut(s)	497
VpaK11BI	GGWCC	1 cut(s)	1658
XapI	RAATTY	7 cut(s)	422, 623, 702, 759, 823, 1426, 1733
XmiI	GTMKAC	2 cut(s)	657, 1030
XspI	CTAG	3 cut(s)	840, 1547, 1770
Zsp2I	ATGCAT	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.