Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001412

Physical Location & Seq

Genomic Coordinates Forward (+)

78415944 .. 78438242

Gene Structure 22299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG553600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCAACTGGTGGTTCATTTGTGCTGTTTATTATGCTAGCAGGAGGTATAGGAATTGCTACTATGATAATTGGCGGACCTCATGAAAAGGACTTTGTACCATTATTGAATGTGGTATTTGATCAGATGATGACAACAGCAATAGCTATTGAAGATGTCCGCAGAGTGTTATTTCTTTTTTATCTATCTGCTGTCTTCACAGCCCACCCATGGCTAAGGGATGAAAGACAAGCTGTGCCTTTAGATTTAGTAATTCACAAGTTGGTTAAGTCATATGTTCGTGCCACACCTTTCAGGCGTGCAGCAATGAAGGCTCTTTCCAAGGCTATGACAGAAGATGAGCTCTACTATCTTAGGGCTCAGTTTACGCTCTTGGAACCCAAACATGGATACGTGTCCCTCGATAATTTCAGAACGGTTGTTTTCACTGGGGGCAGTACACAACCAGGAACAACAAAACCTGATAAGGGGGAGCGCCACCCTTACTCTGTACTAGAGTCTGAGCGTAGACGTGAAGTCAGTATACCATCTGTTATCTACATACAAAAGATTTTGAGGCGAAGGCCATTTCTGATAAAGAATCTCGAAAATGTCTTCCTTCAGTCATTGGAGCTTTTTGTGGAAAATGAAAGGAAGAAGCTGGCAATTTGCACAACACTTGCATTCTCTCAAAAGCTATTAGGACTTACACTGGAAACGGTGTTCCAGCCAATGCTCATATTGGAAAAAGTTGGAATGGAACTTGTTTTGGTCTCAACCAAGGAAACAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

257

Amino Acids

29.2

Weight (kDa)

9.38

Isoelectric Point (pI)

43.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEAT_5MP1_2	PF25504	134 - 250	1.2e-19	5MP1/2 HEAT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49370 AT5G24430
fragaria_vesca	FvH4_7g32610 FvH4_7g32610
malus_domestica	MD01G1227200.v1.1 MD07G1297500.v1.1
prunus_persica	Prupe.2G317200_v2.0.a1 Prupe.2G317200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0382501 RchiOBHm_Chr2g0138551 RchiOBHm_Chr2g0138561 RchiOBHm_Chr2g0161821 RchiOBHm_Chr6g0303421
rosa_laevigata	RLG00000007574 RLG00000010752 RLG00000023924 RLG00000026171 RLG00000031079 RLG00000034979 RLG00000035703 RLG00000036307
rosa_multiflora	Rmu_sc0000110.1_g000053 Rmu_sc0000110.1_g000055 Rmu_sc0003696.1_g000002 Rmu_sc0029402.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111900 Rroxscaffold_4G00278000 Rroxscaffold_7G00202700
rosa_rugosa	Rorug01G0435000
rosa_samantha	Rh1AG262900 Rh1AG460000 Rh1BG182300 Rh1BG416200 Rh1CG430000 Rh1DG212400 Rh1DG448600 Rh2AG553600 Rh2BG637900 Rh4AG140900 Rh4CG147700 Rh4CG147800 Rh5CG368300 Rh5CG374200 Rh6AG435500 Rh6CG169600 Rh6CG190900 Rh6DG161600 Rh7BG358800 Rh7CG197800 Rh7CG451800
rosa_wichuraiana	Rw1G001490 Rw1G041160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	508, 523
AciI	CCGC	2 cut(s)	75, 160
AcuI	CTGAAG	1 cut(s)	584
AfaI	GTAC	3 cut(s)	99, 439, 492
AfiI	CCNNNNNNNGG	3 cut(s)	210, 386, 467
AflIII	ACRYGT	1 cut(s)	393
AgsI	TTSAA	2 cut(s)	109, 152
AhdI	GACNNNNNGTC	1 cut(s)	515
AjiI	CACGTC	1 cut(s)	512
AjnI	CCWGG	1 cut(s)	445
AloI	GAACNNNNNNTCC	2 cut(s)	686, 718
AluBI	AGCT	6 cut(s)	146, 233, 343, 613, 640, 676
AluI	AGCT	6 cut(s)	146, 233, 343, 613, 640, 676
Alw21I	GWGCWC	1 cut(s)	345
Alw26I	GTCTC	1 cut(s)	757
AoxI	GGCC	1 cut(s)	563
ApeKI	GCWGC	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	477
AspS9I	GGNCC	1 cut(s)	77
AsuNHI	GCTAGC	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	77
BanII	GRGCYC	2 cut(s)	345, 361
BarI	GAAGNNNNNNTAC	2 cut(s)	507, 539
BbsI	GAAGAC	2 cut(s)	187, 586
Bbv12I	GWGCWC	1 cut(s)	345
BbvI	GCAGC	1 cut(s)	314
BccI	CCATC	1 cut(s)	535
BciT130I	CCWGG	1 cut(s)	447
BciVI	GTATCC	1 cut(s)	383
BclI	TGATCA	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	757
BfaI	CTAG	2 cut(s)	38, 494
BfoI	RGCGCY	1 cut(s)	478
BfuI	GTATCC	1 cut(s)	383
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
Bme1390I	CCNGG	1 cut(s)	447
Bme18I	GGWCC	1 cut(s)	77
BmeRI	GACNNNNNGTC	1 cut(s)	515
BmgBI	CACGTC	1 cut(s)	512
BmgT120I	GGNCC	1 cut(s)	77
BmiI	GGNNCC	1 cut(s)	378
BmrFI	CCNGG	1 cut(s)	447
BmrI	ACTGGG	1 cut(s)	438
BmtI	GCTAGC	1 cut(s)	41
BmuI	ACTGGG	1 cut(s)	438
BpiI	GAAGAC	2 cut(s)	187, 586
Bpu10I	CCTNAGC	1 cut(s)	215
BsaAI	YACGTR	1 cut(s)	394
BsaI	GGTCTC	1 cut(s)	757
BsaJI	CCNNGG	3 cut(s)	209, 321, 759
Bsc4I	CCNNNNNNNGG	3 cut(s)	210, 386, 467
Bse1I	ACTGG	3 cut(s)	13, 433, 696
Bse3DI	GCAATG	1 cut(s)	312
BseBI	CCWGG	1 cut(s)	447
BseDI	CCNNGG	3 cut(s)	209, 321, 759
BseGI	GGATG	1 cut(s)	226
BseLI	CCNNNNNNNGG	3 cut(s)	210, 386, 467
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	2 cut(s)	374, 492
BseNI	ACTGG	3 cut(s)	13, 433, 696
BseXI	GCAGC	1 cut(s)	314
BsgI	GTGCAG	1 cut(s)	321
BshFI	GGCC	1 cut(s)	565
BsiHKAI	GWGCWC	1 cut(s)	345
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	3 cut(s)	210, 386, 467
BsmAI	GTCTC	1 cut(s)	757
BsmFI	GGGAC	1 cut(s)	382
BsmI	GAATGC	1 cut(s)	662
BsnI	GGCC	1 cut(s)	565
Bso31I	GGTCTC	1 cut(s)	757
Bsp1286I	GDGCHC	2 cut(s)	345, 361
Bsp143I	GATC	1 cut(s)	121
Bsp19I	CCATGG	1 cut(s)	209
BspACI	CCGC	2 cut(s)	75, 160
BspANI	GGCC	1 cut(s)	565
BspCNI	CTCAG	2 cut(s)	373, 493
BspHI	TCATGA	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	378
BspOI	GCTAGC	1 cut(s)	41
BspTNI	GGTCTC	1 cut(s)	757
BsrDI	GCAATG	1 cut(s)	312
BsrI	ACTGG	3 cut(s)	13, 433, 696
BssECI	CCNNGG	3 cut(s)	209, 321, 759
BssMI	GATC	1 cut(s)	121
BssNAI	GTATAC	1 cut(s)	524
BssT1I	CCWWGG	3 cut(s)	209, 321, 759
Bst1107I	GTATAC	1 cut(s)	524
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	2 cut(s)	418, 700
BstBAI	YACGTR	1 cut(s)	394
BstC8I	GCNNGC	3 cut(s)	39, 300, 642
BstDEI	CTNAG	4 cut(s)	215, 353, 360, 501
BstDSI	CCRYGG	1 cut(s)	209
BstF5I	GGATG	1 cut(s)	226
BstH2I	RGCGCY	1 cut(s)	478
BstHHI	GCGC	1 cut(s)	477
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	1 cut(s)	757
BstMBI	GATC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstNI	CCWGG	1 cut(s)	447
BstSCI	CCNGG	1 cut(s)	445
BstV1I	GCAGC	1 cut(s)	314
BstV2I	GAAGAC	2 cut(s)	187, 586
BstZ17I	GTATAC	1 cut(s)	524
BsuI	GTATCC	1 cut(s)	383
BsuRI	GGCC	1 cut(s)	565
BtgI	CCRYGG	1 cut(s)	209
BtrI	CACGTC	1 cut(s)	512
BtsCI	GGATG	1 cut(s)	226
BtsIMutI	CAGTG	2 cut(s)	426, 689
Cac8I	GCNNGC	3 cut(s)	39, 300, 642
CciI	TCATGA	1 cut(s)	82
CfoI	GCGC	1 cut(s)	477
Cfr13I	GGNCC	1 cut(s)	77
Csp6I	GTAC	3 cut(s)	98, 438, 491
CviAII	CATG	3 cut(s)	83, 210, 386
CviQI	GTAC	3 cut(s)	98, 438, 491
DdeI	CTNAG	4 cut(s)	215, 353, 360, 501
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
DriI	GACNNNNNGTC	1 cut(s)	515
Eam1105I	GACNNNNNGTC	1 cut(s)	515
EciI	GGCGGA	1 cut(s)	90
Ecl136II	GAGCTC	1 cut(s)	343
Eco130I	CCWWGG	3 cut(s)	209, 321, 759
Eco24I	GRGCYC	2 cut(s)	345, 361
Eco31I	GGTCTC	1 cut(s)	757
Eco47I	GGWCC	1 cut(s)	77
Eco53kI	GAGCTC	1 cut(s)	343
Eco57I	CTGAAG	1 cut(s)	584
EcoICRI	GAGCTC	1 cut(s)	343
EcoRII	CCWGG	1 cut(s)	445
EcoT14I	CCWWGG	3 cut(s)	209, 321, 759
EcoT38I	GRGCYC	2 cut(s)	345, 361
ErhI	CCWWGG	3 cut(s)	209, 321, 759
FaeI	CATG	3 cut(s)	86, 213, 389
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	3 cut(s)	82, 209, 385
FauNDI	CATATG	1 cut(s)	274
FbaI	TGATCA	1 cut(s)	121
FblI	GTMKAC	2 cut(s)	508, 523
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	1 cut(s)	233
FriOI	GRGCYC	2 cut(s)	345, 361
Fsp4HI	GCNGC	1 cut(s)	303
FspBI	CTAG	2 cut(s)	38, 494
GlaI	GCGC	1 cut(s)	476
GluI	GCNGC	1 cut(s)	303
HaeII	RGCGCY	1 cut(s)	478
HaeIII	GGCC	1 cut(s)	565
HhaI	GCGC	1 cut(s)	477
Hin1II	CATG	3 cut(s)	86, 213, 389
Hin6I	GCGC	1 cut(s)	475
HinP1I	GCGC	1 cut(s)	475
HinfI	GANTC	2 cut(s)	497, 580
Hpy166II	GTNNAC	4 cut(s)	366, 440, 509, 524
Hpy188I	TCNGA	4 cut(s)	126, 413, 502, 573
Hpy188III	TCNNGA	2 cut(s)	83, 584
Hpy8I	GTNNAC	4 cut(s)	366, 440, 509, 524
HpyAV	CCTTC	3 cut(s)	304, 555, 608
HpyCH4III	ACNGT	2 cut(s)	418, 700
HpyCH4IV	ACGT	2 cut(s)	393, 511
HpyCH4V	TGCA	3 cut(s)	302, 651, 662
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpyF3I	CTNAG	4 cut(s)	215, 353, 360, 501
HpySE526I	ACGT	2 cut(s)	393, 511
Hsp92II	CATG	3 cut(s)	86, 213, 389
HspAI	GCGC	1 cut(s)	475
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	121
LmnI	GCTCC	2 cut(s)	472, 610
LpnPI	CCDG	9 cut(s)	27, 280, 414, 432, 459, 474, 626, 677, 719
Lsp1109I	GCAGC	1 cut(s)	314
MaeI	CTAG	2 cut(s)	38, 494
MaeII	ACGT	2 cut(s)	393, 511
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	5 cut(s)	164, 187, 347, 586, 646
MhlI	GDGCHC	2 cut(s)	345, 361
MluCI	AATT	5 cut(s)	54, 69, 252, 406, 645
MlyI	GAGTC	1 cut(s)	506
MmeI	TCCRAC	1 cut(s)	712
MnlI	CCTC	4 cut(s)	38, 90, 410, 549
MseI	TTAA	1 cut(s)	267
MspR9I	CCNGG	1 cut(s)	447
Mva1269I	GAATGC	1 cut(s)	662
MvaI	CCWGG	1 cut(s)	447
MwoI	GCNNNNNNNGC	1 cut(s)	311
NcoI	CCATGG	1 cut(s)	209
NdeI	CATATG	1 cut(s)	274
NdeII	GATC	1 cut(s)	121
NheI	GCTAGC	1 cut(s)	37
NlaIII	CATG	3 cut(s)	86, 213, 389
NlaIV	GGNNCC	1 cut(s)	378
PagI	TCATGA	1 cut(s)	82
PcsI	WCGNNNNNNNCGW	1 cut(s)	399
PctI	GAATGC	1 cut(s)	662
PfeI	GAWTC	1 cut(s)	580
PkrI	GCNGC	1 cut(s)	304
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
Ppu21I	YACGTR	1 cut(s)	394
Psp124BI	GAGCTC	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	445
PspN4I	GGNNCC	1 cut(s)	378
PspPI	GGNCC	1 cut(s)	77
RsaI	GTAC	3 cut(s)	99, 439, 492
RsaNI	GTAC	3 cut(s)	98, 438, 491
SacI	GAGCTC	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	1 cut(s)	121
Sau96I	GGNCC	1 cut(s)	77
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	1 cut(s)	447
SduI	GDGCHC	2 cut(s)	345, 361
SinI	GGWCC	1 cut(s)	77
Sse9I	AATT	5 cut(s)	54, 69, 252, 406, 645
SsiI	CCGC	2 cut(s)	75, 160
SspMI	CTAG	2 cut(s)	38, 494
SstI	GAGCTC	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	445
StyI	CCWWGG	3 cut(s)	209, 321, 759
TaaI	ACNGT	2 cut(s)	418, 700
TaiI	ACGT	2 cut(s)	396, 514
TaqI	TCGA	2 cut(s)	402, 585
TasI	AATT	5 cut(s)	54, 69, 252, 406, 645
TatI	WGTACW	2 cut(s)	437, 490
TfiI	GAWTC	1 cut(s)	580
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	2 cut(s)	433, 696
TseI	GCWGC	1 cut(s)	302
TspDTI	ATGAA	5 cut(s)	6, 99, 237, 323, 642
TspRI	CASTG	2 cut(s)	433, 696
VpaK11BI	GGWCC	1 cut(s)	77
XmiI	GTMKAC	2 cut(s)	508, 523
XspI	CTAG	2 cut(s)	38, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.