Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001412

Physical Location & Seq

Genomic Coordinates Reverse (-)

48694007 .. 48697155

Gene Structure 3149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG262900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGACAACCTTAGTTCTACTTGTGCAGATCAGCGCCTCATCGATATTGTTGGTAGTGCATACTATGTAGCACCTGAAGTGGTACATAGATCCTACAGTGTTGAAGCAGATATGTGGAGCATAGGTGTAATAACATATATATTGCTATGTGGAAGTAGACCTTTCTGGGCACGAACTGAATCAGGAATCTTCCGCTCGGTGCTAAGAGCTGATCCTAACTTTAATGATACACCTTGGCCCACAGTGTCCCCAAAAGCCAAAGATTTTGTCAAGAGGCTTCCGAACAAGGATCACAGAAAAAGAATTGACTGCTGCTCAAGCTATAAGTTGAAATCAAAAGAGATGAACACCAAGGAGAAGTGCGCGTATTTTCTGATGCTGGACTTAGTCACACAGTTTTTCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

135

Amino Acids

15.54

Weight (kDa)

8.83

Isoelectric Point (pI)

32.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	13 - 105	7.8e-20	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49370 AT5G24430
fragaria_vesca	FvH4_7g32610 FvH4_7g32610
malus_domestica	MD01G1227200.v1.1 MD07G1297500.v1.1
prunus_persica	Prupe.2G317200_v2.0.a1 Prupe.2G317200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0382501 RchiOBHm_Chr2g0138551 RchiOBHm_Chr2g0138561 RchiOBHm_Chr2g0161821 RchiOBHm_Chr6g0303421
rosa_laevigata	RLG00000007574 RLG00000010752 RLG00000023924 RLG00000026171 RLG00000031079 RLG00000034979 RLG00000035703 RLG00000036307
rosa_multiflora	Rmu_sc0000110.1_g000053 Rmu_sc0000110.1_g000055 Rmu_sc0003696.1_g000002 Rmu_sc0029402.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111900 Rroxscaffold_4G00278000 Rroxscaffold_7G00202700
rosa_rugosa	Rorug01G0435000
rosa_samantha	Rh1AG262900 Rh1AG460000 Rh1BG182300 Rh1BG416200 Rh1CG430000 Rh1DG212400 Rh1DG448600 Rh2AG553600 Rh2BG637900 Rh4AG140900 Rh4CG147700 Rh4CG147800 Rh5CG368300 Rh5CG374200 Rh6AG435500 Rh6CG169600 Rh6CG190900 Rh6DG161600 Rh7BG358800 Rh7CG197800 Rh7CG451800
rosa_wichuraiana	Rw1G001490 Rw1G041160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	195
AccI	GTMKAC	1 cut(s)	157
AccII	CGCG	1 cut(s)	365
AciI	CCGC	1 cut(s)	193
AclWI	GGATC	3 cut(s)	84, 206, 297
AcuI	CTGAAG	1 cut(s)	96
AfaI	GTAC	1 cut(s)	84
AgsI	TTSAA	2 cut(s)	104, 331
AluBI	AGCT	2 cut(s)	209, 321
AluI	AGCT	2 cut(s)	209, 321
AlwI	GGATC	3 cut(s)	84, 206, 297
AoxI	GGCC	1 cut(s)	236
ApeKI	GCWGC	1 cut(s)	312
ArsI	GACNNNNNNTTYG	2 cut(s)	252, 284
AspLEI	GCGC	2 cut(s)	36, 365
AspS9I	GGNCC	1 cut(s)	237
BaeGI	GKGCMC	1 cut(s)	172
BbvI	GCAGC	1 cut(s)	299
BfmI	CTRYAG	1 cut(s)	94
BfoI	RGCGCY	1 cut(s)	37
BisI	GCNGC	1 cut(s)	313
BlsI	GCNGC	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	237
BmsI	GCATC	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	301
Bsa29I	ATCGAT	1 cut(s)	42
BsaJI	CCNNGG	2 cut(s)	233, 351
BsaXI	ACNNNNNCTCC	2 cut(s)	109, 139
BseCI	ATCGAT	1 cut(s)	42
BseDI	CCNNGG	2 cut(s)	233, 351
BseSI	GKGCMC	1 cut(s)	172
BseXI	GCAGC	1 cut(s)	299
BsgI	GTGCAG	1 cut(s)	45
Bsh1236I	CGCG	1 cut(s)	365
BshFI	GGCC	1 cut(s)	238
BshVI	ATCGAT	1 cut(s)	42
BslFI	GGGAC	1 cut(s)	232
BsmFI	GGGAC	1 cut(s)	232
BsnI	GGCC	1 cut(s)	238
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp143I	GATC	4 cut(s)	28, 89, 211, 289
BspACI	CCGC	1 cut(s)	193
BspANI	GGCC	1 cut(s)	238
BspDI	ATCGAT	1 cut(s)	42
BspFNI	CGCG	1 cut(s)	365
BspPI	GGATC	3 cut(s)	84, 206, 297
BsrBI	CCGCTC	1 cut(s)	195
BssECI	CCNNGG	2 cut(s)	233, 351
BssMI	GATC	4 cut(s)	28, 89, 211, 289
BssT1I	CCWWGG	2 cut(s)	233, 351
Bst4CI	ACNGT	3 cut(s)	98, 244, 396
BstDEI	CTNAG	3 cut(s)	11, 203, 385
BstFNI	CGCG	1 cut(s)	365
BstH2I	RGCGCY	1 cut(s)	37
BstHHI	GCGC	2 cut(s)	36, 365
BstKTI	GATC	4 cut(s)	31, 92, 214, 292
BstMBI	GATC	4 cut(s)	28, 89, 211, 289
BstMWI	GCNNNNNNNGC	1 cut(s)	318
BstSFI	CTRYAG	1 cut(s)	94
BstSLI	GKGCMC	1 cut(s)	172
BstUI	CGCG	1 cut(s)	365
BstV1I	GCAGC	1 cut(s)	299
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
Bsu15I	ATCGAT	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	238
BsuTUI	ATCGAT	1 cut(s)	42
BtsIMutI	CAGTG	2 cut(s)	103, 249
CfoI	GCGC	2 cut(s)	36, 365
Cfr13I	GGNCC	1 cut(s)	237
ClaI	ATCGAT	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	83
CviJI	RGCY	5 cut(s)	209, 238, 257, 277, 321
CviKI_1	RGCY	5 cut(s)	209, 238, 257, 277, 321
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	3 cut(s)	11, 203, 385
DpnI	GATC	4 cut(s)	30, 91, 213, 291
DpnII	GATC	4 cut(s)	28, 89, 211, 289
Eco130I	CCWWGG	2 cut(s)	233, 351
Eco57I	CTGAAG	1 cut(s)	96
EcoT14I	CCWWGG	2 cut(s)	233, 351
ErhI	CCWWGG	2 cut(s)	233, 351
FalI	AAGNNNNNCTT	2 cut(s)	145, 177
FaqI	GGGAC	1 cut(s)	232
FblI	GTMKAC	1 cut(s)	157
Fnu4HI	GCNGC	1 cut(s)	313
Fsp4HI	GCNGC	1 cut(s)	313
GlaI	GCGC	2 cut(s)	35, 364
GluI	GCNGC	1 cut(s)	313
HaeII	RGCGCY	1 cut(s)	37
HaeIII	GGCC	1 cut(s)	238
HhaI	GCGC	2 cut(s)	36, 365
Hin6I	GCGC	2 cut(s)	34, 363
HinP1I	GCGC	2 cut(s)	34, 363
HinfI	GANTC	2 cut(s)	179, 186
Hpy166II	GTNNAC	1 cut(s)	158
Hpy188I	TCNGA	2 cut(s)	282, 375
Hpy188III	TCNNGA	2 cut(s)	183, 271
Hpy8I	GTNNAC	1 cut(s)	158
HpyCH4III	ACNGT	3 cut(s)	98, 244, 396
HpyCH4V	TGCA	2 cut(s)	26, 59
HpyF10VI	GCNNNNNNNGC	1 cut(s)	318
HpyF3I	CTNAG	3 cut(s)	11, 203, 385
HspAI	GCGC	2 cut(s)	34, 363
Kzo9I	GATC	4 cut(s)	28, 89, 211, 289
LmnI	GCTCC	1 cut(s)	117
LpnPI	CCDG	4 cut(s)	87, 151, 168, 365
Lsp1109I	GCAGC	1 cut(s)	299
LweI	GCATC	1 cut(s)	366
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	4 cut(s)	30, 91, 213, 291
MbiI	CCGCTC	1 cut(s)	195
MboI	GATC	4 cut(s)	28, 89, 211, 289
MboII	GAAGA	1 cut(s)	181
MflI	RGATCY	1 cut(s)	89
MhlI	GDGCHC	1 cut(s)	172
MluCI	AATT	1 cut(s)	303
MnlI	CCTC	2 cut(s)	47, 267
MseI	TTAA	1 cut(s)	222
MvnI	CGCG	1 cut(s)	365
MwoI	GCNNNNNNNGC	1 cut(s)	318
NdeII	GATC	4 cut(s)	28, 89, 211, 289
NmuCI	GTSAC	1 cut(s)	388
PfeI	GAWTC	2 cut(s)	179, 186
PflFI	GACNNNGTC	1 cut(s)	386
PkrI	GCNGC	1 cut(s)	314
PspPI	GGNCC	1 cut(s)	237
PsuI	RGATCY	1 cut(s)	89
PsyI	GACNNNGTC	1 cut(s)	386
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	1 cut(s)	313
Sau3AI	GATC	4 cut(s)	28, 89, 211, 289
Sau96I	GGNCC	1 cut(s)	237
SduI	GDGCHC	1 cut(s)	172
SetI	ASST	7 cut(s)	12, 76, 127, 163, 211, 235, 323
SfaNI	GCATC	1 cut(s)	366
SfcI	CTRYAG	1 cut(s)	94
SmlI	CTYRAG	1 cut(s)	316
SmoI	CTYRAG	1 cut(s)	316
Sse9I	AATT	1 cut(s)	303
SsiI	CCGC	1 cut(s)	193
StyI	CCWWGG	2 cut(s)	233, 351
TaaI	ACNGT	3 cut(s)	98, 244, 396
TaqI	TCGA	1 cut(s)	42
TasI	AATT	1 cut(s)	303
TfiI	GAWTC	2 cut(s)	179, 186
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	2 cut(s)	103, 249
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	1 cut(s)	312
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	1 cut(s)	359
TspRI	CASTG	2 cut(s)	103, 249
Tth111I	GACNNNGTC	1 cut(s)	386
XmiI	GTMKAC	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.