Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001412

Physical Location & Seq

Genomic Coordinates Reverse (-)

48225950 .. 48228105

Gene Structure 2156 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG374200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGTCTGTAGAGAGGGGTGGAAGATACACAGAAGAAGATGCTAAAGTTATTGTTGTGCAAATTTTAAGTGTTATTGCCTATTGTCATCTTCAAGATGTTGTGCATTGTGATCTAAAGCCAGAGAATTTTCTTTTTGCCACAAGAGAAGAGGATGCTTCAGTGAGGGTTATTGATTTTGGTCTCTCCGATTTTATAAGGCCTGAAAATATGAGGAGATCTATGCACCCCTGGTTGAAGAATTTTGTTACATTACTTATAGGGTCCCTTATTGATAACACATGTTTTAAGGAAAGAGGTAAGACTTTATCCTACTTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

106

Amino Acids

12.3

Weight (kDa)

5.6

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 70	7.2e-17	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49370 AT5G24430
fragaria_vesca	FvH4_7g32610 FvH4_7g32610
malus_domestica	MD01G1227200.v1.1 MD07G1297500.v1.1
prunus_persica	Prupe.2G317200_v2.0.a1 Prupe.2G317200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0382501 RchiOBHm_Chr2g0138551 RchiOBHm_Chr2g0138561 RchiOBHm_Chr2g0161821 RchiOBHm_Chr6g0303421
rosa_laevigata	RLG00000007574 RLG00000010752 RLG00000023924 RLG00000026171 RLG00000031079 RLG00000034979 RLG00000035703 RLG00000036307
rosa_multiflora	Rmu_sc0000110.1_g000053 Rmu_sc0000110.1_g000055 Rmu_sc0003696.1_g000002 Rmu_sc0029402.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111900 Rroxscaffold_4G00278000 Rroxscaffold_7G00202700
rosa_rugosa	Rorug01G0435000
rosa_samantha	Rh1AG262900 Rh1AG460000 Rh1BG182300 Rh1BG416200 Rh1CG430000 Rh1DG212400 Rh1DG448600 Rh2AG553600 Rh2BG637900 Rh4AG140900 Rh4CG147700 Rh4CG147800 Rh5CG368300 Rh5CG374200 Rh6AG435500 Rh6CG169600 Rh6CG190900 Rh6DG161600 Rh7BG358800 Rh7CG197800 Rh7CG451800
rosa_wichuraiana	Rw1G001490 Rw1G041160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	194
AcsI	RAATTY	3 cut(s)	60, 124, 238
AcuI	CTGAAG	1 cut(s)	141
AflIII	ACRYGT	1 cut(s)	278
AgsI	TTSAA	2 cut(s)	92, 235
AjnI	CCWGG	1 cut(s)	227
Alw26I	GTCTC	1 cut(s)	185
AoxI	GGCC	1 cut(s)	197
ApoI	RAATTY	3 cut(s)	60, 124, 238
AspS9I	GGNCC	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	261
BciT130I	CCWGG	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	185
BfmI	CTRYAG	1 cut(s)	6
BglII	AGATCT	1 cut(s)	215
Bme1390I	CCNGG	1 cut(s)	229
Bme18I	GGWCC	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	261
BmiI	GGNNCC	2 cut(s)	262, 263
BmrFI	CCNGG	1 cut(s)	229
BmsI	GCATC	2 cut(s)	28, 142
BsaI	GGTCTC	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	229
BseDI	CCNNGG	1 cut(s)	227
BseGI	GGATG	1 cut(s)	157
BseRI	GAGGAG	1 cut(s)	226
BshFI	GGCC	1 cut(s)	199
BslFI	GGGAC	1 cut(s)	247
BsmAI	GTCTC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	199
Bso31I	GGTCTC	1 cut(s)	185
Bsp143I	GATC	2 cut(s)	109, 215
BspANI	GGCC	1 cut(s)	199
BspLI	GGNNCC	2 cut(s)	262, 263
BspTNI	GGTCTC	1 cut(s)	185
BssECI	CCNNGG	1 cut(s)	227
BssMI	GATC	2 cut(s)	109, 215
Bst2UI	CCWGG	1 cut(s)	229
Bst6I	CTCTTC	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	157
BstKTI	GATC	2 cut(s)	112, 218
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	2 cut(s)	109, 215
BstNI	CCWGG	1 cut(s)	229
BstNSI	RCATGY	1 cut(s)	282
BstSCI	CCNGG	1 cut(s)	227
BstSFI	CTRYAG	1 cut(s)	6
BstX2I	RGATCY	1 cut(s)	215
BstYI	RGATCY	1 cut(s)	215
BsuRI	GGCC	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	157
BtsIMutI	CAGTG	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	261
CviAII	CATG	1 cut(s)	279
CviJI	RGCY	2 cut(s)	118, 199
CviKI_1	RGCY	2 cut(s)	118, 199
DpnI	GATC	2 cut(s)	111, 217
DpnII	GATC	2 cut(s)	109, 215
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco147I	AGGCCT	1 cut(s)	199
Eco31I	GGTCTC	1 cut(s)	185
Eco47I	GGWCC	1 cut(s)	261
Eco57I	CTGAAG	1 cut(s)	141
EcoO109I	RGGNCCY	1 cut(s)	261
EcoRII	CCWGG	1 cut(s)	227
FaeI	CATG	1 cut(s)	282
FaiI	YATR	5 cut(s)	194, 209, 221, 257, 280
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	1 cut(s)	278
FokI	GGATG	1 cut(s)	164
HaeIII	GGCC	1 cut(s)	199
Hin1II	CATG	1 cut(s)	282
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	1 cut(s)	92
HpyCH4V	TGCA	3 cut(s)	58, 103, 223
Hsp92II	CATG	1 cut(s)	282
KflI	GGGWCCC	1 cut(s)	261
Kzo9I	GATC	2 cut(s)	109, 215
LpnPI	CCDG	4 cut(s)	132, 213, 214, 241
LweI	GCATC	2 cut(s)	28, 142
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	2 cut(s)	111, 217
MboI	GATC	2 cut(s)	109, 215
MboII	GAAGA	6 cut(s)	33, 44, 47, 80, 158, 247
MflI	RGATCY	1 cut(s)	215
MluCI	AATT	3 cut(s)	60, 124, 238
MnlI	CCTC	5 cut(s)	6, 142, 156, 204, 287
MseI	TTAA	2 cut(s)	65, 285
MspR9I	CCNGG	1 cut(s)	229
MvaI	CCWGG	1 cut(s)	229
NdeII	GATC	2 cut(s)	109, 215
NlaIII	CATG	1 cut(s)	282
NlaIV	GGNNCC	2 cut(s)	262, 263
NspI	RCATGY	1 cut(s)	282
PceI	AGGCCT	1 cut(s)	199
PciI	ACATGT	1 cut(s)	278
PpuMI	RGGWCCY	1 cut(s)	261
PscI	ACATGT	1 cut(s)	278
PsiI	TTATAA	1 cut(s)	194
Psp5II	RGGWCCY	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	227
PspN4I	GGNNCC	2 cut(s)	262, 263
PspPI	GGNCC	1 cut(s)	261
PspPPI	RGGWCCY	1 cut(s)	261
PsuI	RGATCY	1 cut(s)	215
SaqAI	TTAA	2 cut(s)	65, 285
Sau3AI	GATC	2 cut(s)	109, 215
Sau96I	GGNCC	1 cut(s)	261
ScrFI	CCNGG	1 cut(s)	229
SetI	ASST	1 cut(s)	298
SfaNI	GCATC	2 cut(s)	28, 142
SfcI	CTRYAG	1 cut(s)	6
SgeI	CNNG	7 cut(s)	104, 131, 153, 212, 240, 241, 291
SinI	GGWCC	1 cut(s)	261
Sse9I	AATT	3 cut(s)	60, 124, 238
SseBI	AGGCCT	1 cut(s)	199
StuI	AGGCCT	1 cut(s)	199
StyD4I	CCNGG	1 cut(s)	227
TasI	AATT	3 cut(s)	60, 124, 238
Tru1I	TTAA	2 cut(s)	65, 285
Tru9I	TTAA	2 cut(s)	65, 285
TscAI	CASTG	1 cut(s)	165
TspRI	CASTG	1 cut(s)	165
VpaK11BI	GGWCC	1 cut(s)	261
XapI	RAATTY	3 cut(s)	60, 124, 238
XceI	RCATGY	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.