Rh2BG637900

CDPK-related kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
85834900 .. 85840182
5283 bp
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UTR
Exon/CDS
Intron
Rh2BG637900.1

Sequence Viewer

Length: 378 bp
ATGTCCGTAGAGAGGTTGTGTAAAGGTGGAGAACTACTGGATAAAATTTTGTCCAGGGGTGGAAGATACACAGAAGAAGATGCTAAAGTTATTGTTGTGCAAATTTTAAGTGTTATTGCCTATTGTCATCTTCAAGATGTTGTGCATTGTGATCTAAAGCCAGAGAATTTTCTTTTTGCCACAAGAGAAGAGGATGCTTCAGTGAGGGTTATTGATTTTGGTCTCTCCGATTTTATAAGGCCTGGACAAGCTGTTCTATTGCAAAGCTACATTAACCAGGTTTGTGCCAGAAGATGGGTGGTTCTATGCAGCCTGCCCCTGCTCGAAGCAAATGAGGAAAAAGCCACTGAGTCAACTAATAATCTGCCCAGATTATGA

Protein Analysis

125

Amino Acids

14.09

Weight (kDa)

5.17

Isoelectric Point (pI)

51.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 3 - 85 1.3e-07 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 6 - 90 1.7e-19 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 236
AccB7I CCANNNNNTGG 1 cut(s) 294
AcsI RAATTY 3 cut(s) 45, 102, 166
AcuI CTGAAG 1 cut(s) 183
AfiI CCNNNNNNNGG 2 cut(s) 12, 294
AgsI TTSAA 1 cut(s) 134
AjnI CCWGG 3 cut(s) 53, 241, 276
AloI GAACNNNNNNTCC 2 cut(s) 237, 269
AluBI AGCT 2 cut(s) 251, 267
AluI AGCT 2 cut(s) 251, 267
Alw26I GTCTC 1 cut(s) 227
AoxI GGCC 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 309
ApoI RAATTY 3 cut(s) 45, 102, 166
BbvI GCAGC 1 cut(s) 321
BccI CCATC 1 cut(s) 288
BciT130I CCWGG 3 cut(s) 55, 243, 278
BcoDI GTCTC 1 cut(s) 227
BisI GCNGC 1 cut(s) 310
BlsI GCNGC 1 cut(s) 311
Bme1390I CCNGG 3 cut(s) 55, 243, 278
BmrFI CCNGG 3 cut(s) 55, 243, 278
BmsI GCATC 2 cut(s) 70, 184
BsaI GGTCTC 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 54
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 294
Bse1I ACTGG 1 cut(s) 42
BseBI CCWGG 3 cut(s) 55, 243, 278
BseDI CCNNGG 1 cut(s) 54
BseGI GGATG 1 cut(s) 199
BseLI CCNNNNNNNGG 2 cut(s) 12, 294
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 321
BshFI GGCC 1 cut(s) 241
BslI CCNNNNNNNGG 2 cut(s) 12, 294
BsmAI GTCTC 1 cut(s) 227
BsnI GGCC 1 cut(s) 241
Bso31I GGTCTC 1 cut(s) 227
Bsp143I GATC 1 cut(s) 151
BspANI GGCC 1 cut(s) 241
BspCNI CTCAG 1 cut(s) 340
BspTNI GGTCTC 1 cut(s) 227
BsrI ACTGG 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 1 cut(s) 151
Bst2UI CCWGG 3 cut(s) 55, 243, 278
Bst6I CTCTTC 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 314
BstDEI CTNAG 1 cut(s) 348
BstF5I GGATG 1 cut(s) 199
BstKTI GATC 1 cut(s) 154
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 1 cut(s) 151
BstNI CCWGG 3 cut(s) 55, 243, 278
BstSCI CCNGG 3 cut(s) 53, 241, 276
BstV1I GCAGC 1 cut(s) 321
BsuRI GGCC 1 cut(s) 241
BtsCI GGATG 1 cut(s) 199
BtsIMutI CAGTG 2 cut(s) 207, 345
Cac8I GCNNGC 1 cut(s) 314
CsiI ACCWGGT 1 cut(s) 276
CviJI RGCY 6 cut(s) 160, 241, 251, 267, 312, 344
CviKI_1 RGCY 6 cut(s) 160, 241, 251, 267, 312, 344
DdeI CTNAG 1 cut(s) 348
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco147I AGGCCT 1 cut(s) 241
Eco31I GGTCTC 1 cut(s) 227
Eco57I CTGAAG 1 cut(s) 183
EcoRII CCWGG 3 cut(s) 53, 241, 276
FaiI YATR 3 cut(s) 236, 307, 376
Fnu4HI GCNGC 1 cut(s) 310
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 1 cut(s) 310
GluI GCNGC 1 cut(s) 310
HaeIII GGCC 1 cut(s) 241
HincII GTYRAC 1 cut(s) 354
HindII GTYRAC 1 cut(s) 354
HinfI GANTC 1 cut(s) 350
Hpy166II GTNNAC 1 cut(s) 354
Hpy188I TCNGA 1 cut(s) 229
Hpy188III TCNNGA 1 cut(s) 134
Hpy8I GTNNAC 1 cut(s) 354
HpyCH4V TGCA 4 cut(s) 100, 145, 262, 309
HpyF3I CTNAG 1 cut(s) 348
Kzo9I GATC 1 cut(s) 151
Lsp1109I GCAGC 1 cut(s) 321
LweI GCATC 2 cut(s) 70, 184
MabI ACCWGGT 1 cut(s) 276
MalI GATC 1 cut(s) 153
MboI GATC 1 cut(s) 151
MboII GAAGA 6 cut(s) 75, 86, 89, 122, 200, 303
MluCI AATT 3 cut(s) 45, 102, 166
MlyI GAGTC 1 cut(s) 359
MnlI CCTC 4 cut(s) 6, 184, 198, 328
MseI TTAA 2 cut(s) 107, 273
MspR9I CCNGG 3 cut(s) 55, 243, 278
MvaI CCWGG 3 cut(s) 55, 243, 278
NdeII GATC 1 cut(s) 151
PceI AGGCCT 1 cut(s) 241
PflMI CCANNNNNTGG 1 cut(s) 294
PkrI GCNGC 1 cut(s) 311
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
PsiI TTATAA 1 cut(s) 236
Psp6I CCWGG 3 cut(s) 53, 241, 276
PspGI CCWGG 3 cut(s) 53, 241, 276
SaqAI TTAA 2 cut(s) 107, 273
SatI GCNGC 1 cut(s) 310
Sau3AI GATC 1 cut(s) 151
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 3 cut(s) 55, 243, 278
SetI ASST 5 cut(s) 17, 28, 253, 269, 282
SexAI ACCWGGT 1 cut(s) 276
SfaNI GCATC 2 cut(s) 70, 184
Sse9I AATT 3 cut(s) 45, 102, 166
SseBI AGGCCT 1 cut(s) 241
StuI AGGCCT 1 cut(s) 241
StyD4I CCNGG 3 cut(s) 53, 241, 276
TaqI TCGA 1 cut(s) 324
TasI AATT 3 cut(s) 45, 102, 166
Tru1I TTAA 2 cut(s) 107, 273
Tru9I TTAA 2 cut(s) 107, 273
TscAI CASTG 2 cut(s) 207, 352
TseI GCWGC 1 cut(s) 309
TspRI CASTG 2 cut(s) 207, 352
Van91I CCANNNNNTGG 1 cut(s) 294
XapI RAATTY 3 cut(s) 45, 102, 166
XcmI CCANNNNNNNNNTGG 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.