Rh1BG182300

Basic leucine zipper and W2 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001412
Physical Location & Seq
Forward (+)
29180083 .. 29182892
2810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG182300.1

Sequence Viewer

Length: 669 bp
ATGACAACAGCAATAGCTATTGAAGATGTCCGTTGTGTGAAGGTGGAGAACTACTGGATAAAATTTTGTCCAGGGGTGGAAGATACACAGAAGAAGATGCTAAAGTTATTGTTGTGCAAATTTGAAGTGTTATTGCCTGTTGTCATCTTCAAGGTGCATGTTGTGCATCGTGATCTAAAGCCAGAGGCTCTTTCCAAGGCTATGACAGAAGATGAGCTCTACTATCTTAGGGCTCAGTTTACGCTCTTGGAATCCAAACATGGATATGTGTCCCTCGATAATTTCAGAACGGTTGTTTTCACTGGGGGCAGTACACAACCAGGAACAACAAAACCTGATAAGGGGGAGCGCCACCCTTACTCTGTACTAGAGTCTGAGCGTAGACGTGAAGTCAGTATACCATCTGTTATCTACATACAAAAGATTTTGAGGCGAAGGCCATTTCTGATAAAGAATCTCGAAAATATCTTCCTTCAGTCATTGGAGCTTTTTGTGGAAAATGAAAGGAAGAAGCTGGCAATTTGCACAGCACTTGCATTCTCTCAAAAGCTATCAGGACTTACACTGGAAACGGTGTTCCAGCCAATGCTCATATTGGAAAAAGTTGGTAATATTAGTTGTTTCATTTACAGATACCTATTATTAGAAAGATGGCTCTACAAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
W2

Protein Analysis

222

Amino Acids

25.88

Weight (kDa)

9.21

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HEAT_5MP1_2 PF25504 93 - 196 2.3e-19 5MP1/2 HEAT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 382, 397
AcsI RAATTY 2 cut(s) 62, 119
AcuI CTGAAG 1 cut(s) 458
AfaI GTAC 2 cut(s) 313, 366
AfiI CCNNNNNNNGG 1 cut(s) 341
AgsI TTSAA 3 cut(s) 23, 125, 151
AhdI GACNNNNNGTC 1 cut(s) 389
AjiI CACGTC 1 cut(s) 386
AjnI CCWGG 2 cut(s) 70, 319
AloI GAACNNNNNNTCC 2 cut(s) 560, 592
AluBI AGCT 5 cut(s) 17, 217, 487, 514, 550
AluI AGCT 5 cut(s) 17, 217, 487, 514, 550
Alw21I GWGCWC 1 cut(s) 219
AoxI GGCC 1 cut(s) 437
ApoI RAATTY 2 cut(s) 62, 119
AspLEI GCGC 1 cut(s) 351
BanII GRGCYC 2 cut(s) 219, 235
BarI GAAGNNNNNNTAC 2 cut(s) 381, 413
Bbv12I GWGCWC 1 cut(s) 219
BccI CCATC 2 cut(s) 409, 645
BciT130I CCWGG 2 cut(s) 72, 321
BfaI CTAG 1 cut(s) 368
BfoI RGCGCY 1 cut(s) 352
Bme1390I CCNGG 2 cut(s) 72, 321
BmeRI GACNNNNNGTC 1 cut(s) 389
BmgBI CACGTC 1 cut(s) 386
BmrFI CCNGG 2 cut(s) 72, 321
BmrI ACTGGG 1 cut(s) 312
BmsI GCATC 2 cut(s) 87, 175
BmuI ACTGGG 1 cut(s) 312
BsaJI CCNNGG 2 cut(s) 71, 195
Bsc4I CCNNNNNNNGG 1 cut(s) 341
Bse1I ACTGG 3 cut(s) 59, 307, 570
BseBI CCWGG 2 cut(s) 72, 321
BseDI CCNNGG 2 cut(s) 71, 195
BseLI CCNNNNNNNGG 1 cut(s) 341
BseMII CTCAG 2 cut(s) 248, 366
BseNI ACTGG 3 cut(s) 59, 307, 570
BshFI GGCC 1 cut(s) 439
BsiHKAI GWGCWC 1 cut(s) 219
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 1 cut(s) 341
BsmFI GGGAC 1 cut(s) 256
BsmI GAATGC 1 cut(s) 536
BsnI GGCC 1 cut(s) 439
Bsp1286I GDGCHC 2 cut(s) 219, 235
Bsp143I GATC 1 cut(s) 172
BspANI GGCC 1 cut(s) 439
BspCNI CTCAG 2 cut(s) 247, 367
BsrI ACTGG 3 cut(s) 59, 307, 570
BssECI CCNNGG 2 cut(s) 71, 195
BssMI GATC 1 cut(s) 172
BssNAI GTATAC 1 cut(s) 398
BssT1I CCWWGG 1 cut(s) 195
Bst1107I GTATAC 1 cut(s) 398
Bst2UI CCWGG 2 cut(s) 72, 321
Bst4CI ACNGT 2 cut(s) 292, 574
BstAPI GCANNNNNTGC 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 516
BstDEI CTNAG 3 cut(s) 227, 234, 375
BstH2I RGCGCY 1 cut(s) 352
BstHHI GCGC 1 cut(s) 351
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstMWI GCNNNNNNNGC 1 cut(s) 163
BstNI CCWGG 2 cut(s) 72, 321
BstNSI RCATGY 1 cut(s) 161
BstSCI CCNGG 2 cut(s) 70, 319
BstZ17I GTATAC 1 cut(s) 398
BsuRI GGCC 1 cut(s) 439
BtrI CACGTC 1 cut(s) 386
BtsIMutI CAGTG 2 cut(s) 300, 563
Cac8I GCNNGC 1 cut(s) 516
CfoI GCGC 1 cut(s) 351
Csp6I GTAC 2 cut(s) 312, 365
CviAII CATG 2 cut(s) 158, 260
CviQI GTAC 2 cut(s) 312, 365
DdeI CTNAG 3 cut(s) 227, 234, 375
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
DriI GACNNNNNGTC 1 cut(s) 389
Eam1105I GACNNNNNGTC 1 cut(s) 389
Ecl136II GAGCTC 1 cut(s) 217
Eco130I CCWWGG 1 cut(s) 195
Eco24I GRGCYC 2 cut(s) 219, 235
Eco53kI GAGCTC 1 cut(s) 217
Eco57I CTGAAG 1 cut(s) 458
EcoICRI GAGCTC 1 cut(s) 217
EcoRII CCWGG 2 cut(s) 70, 319
EcoT14I CCWWGG 1 cut(s) 195
EcoT38I GRGCYC 2 cut(s) 219, 235
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 2 cut(s) 161, 263
FaiI YATR 7 cut(s) 159, 203, 261, 267, 398, 416, 593
FaqI GGGAC 1 cut(s) 256
FatI CATG 2 cut(s) 157, 259
FblI GTMKAC 2 cut(s) 382, 397
FriOI GRGCYC 2 cut(s) 219, 235
FspBI CTAG 1 cut(s) 368
GlaI GCGC 1 cut(s) 350
HaeII RGCGCY 1 cut(s) 352
HaeIII GGCC 1 cut(s) 439
HhaI GCGC 1 cut(s) 351
Hin1II CATG 2 cut(s) 161, 263
Hin6I GCGC 1 cut(s) 349
HinP1I GCGC 1 cut(s) 349
HinfI GANTC 3 cut(s) 251, 371, 454
Hpy166II GTNNAC 4 cut(s) 240, 314, 383, 398
Hpy188I TCNGA 3 cut(s) 287, 376, 447
Hpy188III TCNNGA 3 cut(s) 170, 458, 555
Hpy8I GTNNAC 4 cut(s) 240, 314, 383, 398
HpyAV CCTTC 3 cut(s) 34, 429, 482
HpyCH4III ACNGT 2 cut(s) 292, 574
HpyCH4IV ACGT 1 cut(s) 385
HpyCH4V TGCA 5 cut(s) 117, 157, 166, 525, 536
HpyF10VI GCNNNNNNNGC 1 cut(s) 163
HpyF3I CTNAG 3 cut(s) 227, 234, 375
HpySE526I ACGT 1 cut(s) 385
Hsp92II CATG 2 cut(s) 161, 263
HspAI GCGC 1 cut(s) 349
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 2 cut(s) 346, 484
LweI GCATC 2 cut(s) 87, 175
MaeI CTAG 1 cut(s) 368
MaeII ACGT 1 cut(s) 385
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 8 cut(s) 35, 92, 103, 106, 139, 221, 460, 520
MhlI GDGCHC 2 cut(s) 219, 235
MluCI AATT 4 cut(s) 62, 119, 280, 519
MlyI GAGTC 1 cut(s) 380
MnlI CCTC 3 cut(s) 178, 284, 423
MslI CAYNNNNRTG 1 cut(s) 264
MspR9I CCNGG 2 cut(s) 72, 321
Mva1269I GAATGC 1 cut(s) 536
MvaI CCWGG 2 cut(s) 72, 321
MwoI GCNNNNNNNGC 1 cut(s) 163
NdeII GATC 1 cut(s) 172
NlaIII CATG 2 cut(s) 161, 263
NspI RCATGY 1 cut(s) 161
PctI GAATGC 1 cut(s) 536
PfeI GAWTC 2 cut(s) 251, 454
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
Psp124BI GAGCTC 1 cut(s) 219
Psp6I CCWGG 2 cut(s) 70, 319
PspGI CCWGG 2 cut(s) 70, 319
RsaI GTAC 2 cut(s) 313, 366
RsaNI GTAC 2 cut(s) 312, 365
RseI CAYNNNNRTG 1 cut(s) 264
SacI GAGCTC 1 cut(s) 219
Sau3AI GATC 1 cut(s) 172
SchI GAGTC 1 cut(s) 380
ScrFI CCNGG 2 cut(s) 72, 321
SduI GDGCHC 2 cut(s) 219, 235
SfaNI GCATC 2 cut(s) 87, 175
SmiMI CAYNNNNRTG 1 cut(s) 264
Sse9I AATT 4 cut(s) 62, 119, 280, 519
SspI AATATT 1 cut(s) 613
SspMI CTAG 1 cut(s) 368
SstI GAGCTC 1 cut(s) 219
StyD4I CCNGG 2 cut(s) 70, 319
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 2 cut(s) 292, 574
TaiI ACGT 1 cut(s) 388
TaqI TCGA 2 cut(s) 276, 459
TasI AATT 4 cut(s) 62, 119, 280, 519
TatI WGTACW 2 cut(s) 311, 364
TfiI GAWTC 2 cut(s) 251, 454
TscAI CASTG 2 cut(s) 307, 570
TspDTI ATGAA 2 cut(s) 516, 613
TspGWI ACGGA 1 cut(s) 20
TspRI CASTG 2 cut(s) 307, 570
XapI RAATTY 2 cut(s) 62, 119
XceI RCATGY 1 cut(s) 161
XmiI GTMKAC 2 cut(s) 382, 397
XspI CTAG 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.