Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001412

Physical Location & Seq

Genomic Coordinates Forward (+)

2516629 .. 2517871

Gene Structure 1243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G001490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGACTGCTGCTCAAGCTTTAACCCACCCATGGCTAAGGGATGAAAGACAAGCTGTGCTTTTAGATTTAGTAATCCACAAGTTGGTTAAGTCATATGTTCGTGCCACACCTTTTAGGTGTGCAGCAATGAAGGCTCTTTCCAAGGCTATGACAGAAGATGATCTCTACTATCTTAGGGCTCAGTTTACGCTCTTGGAACCCAAACATGGATACGTGTCCCTCGACAATTTCAGAACGATTAAGACCCGCAAACTGAATATTGCAGCTCCACTGGACCCTGCAGCTTTTGCCGATGCAGTAGTTCCAGATTTTATCTGGATAATGCTGGAACTTATTGCCAAGAGCATTGAATCTTCAGACCTTAACTTCTCAAGATACGGTGACATCTTTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

131

Amino Acids

14.97

Weight (kDa)

7.86

Isoelectric Point (pI)

30.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEAT_5MP1_2	PF25504	80 - 131	7.8e-06	5MP1/2 HEAT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49370 AT5G24430
fragaria_vesca	FvH4_7g32610 FvH4_7g32610
malus_domestica	MD01G1227200.v1.1 MD07G1297500.v1.1
prunus_persica	Prupe.2G317200_v2.0.a1 Prupe.2G317200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0382501 RchiOBHm_Chr2g0138551 RchiOBHm_Chr2g0138561 RchiOBHm_Chr2g0161821 RchiOBHm_Chr6g0303421
rosa_laevigata	RLG00000007574 RLG00000010752 RLG00000023924 RLG00000026171 RLG00000031079 RLG00000034979 RLG00000035703 RLG00000036307
rosa_multiflora	Rmu_sc0000110.1_g000053 Rmu_sc0000110.1_g000055 Rmu_sc0003696.1_g000002 Rmu_sc0029402.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111900 Rroxscaffold_4G00278000 Rroxscaffold_7G00202700
rosa_rugosa	Rorug01G0435000
rosa_samantha	Rh1AG262900 Rh1AG460000 Rh1BG182300 Rh1BG416200 Rh1CG430000 Rh1DG212400 Rh1DG448600 Rh2AG553600 Rh2BG637900 Rh4AG140900 Rh4CG147700 Rh4CG147800 Rh5CG368300 Rh5CG374200 Rh6AG435500 Rh6CG169600 Rh6CG190900 Rh6DG161600 Rh7BG358800 Rh7CG197800 Rh7CG451800
rosa_wichuraiana	Rw1G001490 Rw1G041160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	82
AciI	CCGC	1 cut(s)	247
AcuI	CTGAAG	1 cut(s)	339
AfiI	CCNNNNNNNGG	3 cut(s)	30, 82, 206
AflIII	ACRYGT	1 cut(s)	213
AgsI	TTSAA	1 cut(s)	350
AluBI	AGCT	4 cut(s)	17, 53, 266, 284
AluI	AGCT	4 cut(s)	17, 53, 266, 284
ApeKI	GCWGC	4 cut(s)	8, 122, 263, 281
AspS9I	GGNCC	1 cut(s)	274
AsuHPI	GGTGA	1 cut(s)	392
AvaII	GGWCC	1 cut(s)	274
BanII	GRGCYC	1 cut(s)	181
BbvI	GCAGC	3 cut(s)	134, 275, 293
BciVI	GTATCC	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	279
BfuI	GTATCC	1 cut(s)	203
BisI	GCNGC	4 cut(s)	9, 123, 264, 282
BlsI	GCNGC	4 cut(s)	10, 124, 265, 283
Bme18I	GGWCC	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	2 cut(s)	198, 276
BmsI	GCATC	1 cut(s)	283
Bpu10I	CCTNAGC	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	355
BsaAI	YACGTR	1 cut(s)	214
BsaJI	CCNNGG	2 cut(s)	29, 141
Bsc4I	CCNNNNNNNGG	3 cut(s)	30, 82, 206
Bse1I	ACTGG	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	132
BseDI	CCNNGG	2 cut(s)	29, 141
BseGI	GGATG	1 cut(s)	46
BseLI	CCNNNNNNNGG	3 cut(s)	30, 82, 206
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	194
BseNI	ACTGG	1 cut(s)	276
BseXI	GCAGC	3 cut(s)	134, 275, 293
BsgI	GTGCAG	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	3 cut(s)	30, 82, 206
BsmFI	GGGAC	1 cut(s)	202
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp143I	GATC	1 cut(s)	160
Bsp19I	CCATGG	1 cut(s)	29
BspACI	CCGC	1 cut(s)	247
BspCNI	CTCAG	1 cut(s)	193
BspLI	GGNNCC	2 cut(s)	198, 276
BspMAI	CTGCAG	1 cut(s)	283
BsrDI	GCAATG	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	276
BssECI	CCNNGG	2 cut(s)	29, 141
BssMI	GATC	1 cut(s)	160
BssT1I	CCWWGG	2 cut(s)	29, 141
Bst4CI	ACNGT	1 cut(s)	380
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstBAI	YACGTR	1 cut(s)	214
BstDEI	CTNAG	3 cut(s)	35, 173, 180
BstDSI	CCRYGG	1 cut(s)	29
BstF5I	GGATG	1 cut(s)	46
BstKTI	GATC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 131, 287
BstSFI	CTRYAG	1 cut(s)	279
BstV1I	GCAGC	3 cut(s)	134, 275, 293
BsuI	GTATCC	1 cut(s)	203
BtgI	CCRYGG	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	46
BtsIMutI	CAGTG	1 cut(s)	269
Cfr13I	GGNCC	1 cut(s)	274
CviAII	CATG	2 cut(s)	30, 206
CviJI	RGCY	8 cut(s)	17, 34, 53, 134, 146, 179, 266, 284
CviKI_1	RGCY	8 cut(s)	17, 34, 53, 134, 146, 179, 266, 284
DdeI	CTNAG	3 cut(s)	35, 173, 180
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
Eco130I	CCWWGG	2 cut(s)	29, 141
Eco24I	GRGCYC	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	274
Eco57I	CTGAAG	1 cut(s)	339
EcoT14I	CCWWGG	2 cut(s)	29, 141
EcoT38I	GRGCYC	1 cut(s)	181
ErhI	CCWWGG	2 cut(s)	29, 141
FaeI	CATG	2 cut(s)	33, 209
FaiI	YATR	5 cut(s)	31, 94, 96, 149, 207
FalI	AAGNNNNNCTT	2 cut(s)	42, 74
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	2 cut(s)	29, 205
FauI	CCCGC	1 cut(s)	254
FauNDI	CATATG	1 cut(s)	94
Fnu4HI	GCNGC	4 cut(s)	9, 123, 264, 282
FokI	GGATG	1 cut(s)	53
FriOI	GRGCYC	1 cut(s)	181
Fsp4HI	GCNGC	4 cut(s)	9, 123, 264, 282
GluI	GCNGC	4 cut(s)	9, 123, 264, 282
Hin1II	CATG	2 cut(s)	33, 209
HindIII	AAGCTT	1 cut(s)	15
HinfI	GANTC	1 cut(s)	350
HphI	GGTGA	1 cut(s)	392
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	2 cut(s)	233, 358
Hpy188III	TCNNGA	3 cut(s)	305, 316, 372
Hpy8I	GTNNAC	1 cut(s)	186
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	4 cut(s)	122, 263, 281, 296
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 131, 287
HpyF3I	CTNAG	3 cut(s)	35, 173, 180
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	2 cut(s)	33, 209
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	5 cut(s)	257, 291, 301, 311, 318
Lsp1109I	GCAGC	3 cut(s)	134, 275, 293
LweI	GCATC	1 cut(s)	283
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	1 cut(s)	380
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MboII	GAAGA	2 cut(s)	167, 345
MhlI	GDGCHC	1 cut(s)	181
MluCI	AATT	1 cut(s)	226
MnlI	CCTC	1 cut(s)	230
MseI	TTAA	4 cut(s)	20, 87, 240, 363
MwoI	GCNNNNNNNGC	3 cut(s)	14, 131, 287
NcoI	CCATGG	1 cut(s)	29
NdeI	CATATG	1 cut(s)	94
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	2 cut(s)	33, 209
NlaIV	GGNNCC	2 cut(s)	198, 276
NmuCI	GTSAC	1 cut(s)	380
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	350
PflMI	CCANNNNNTGG	1 cut(s)	82
PkrI	GCNGC	4 cut(s)	10, 124, 265, 283
Ppu21I	YACGTR	1 cut(s)	214
PspN4I	GGNNCC	2 cut(s)	198, 276
PspPI	GGNCC	1 cut(s)	274
PstI	CTGCAG	1 cut(s)	283
SaqAI	TTAA	4 cut(s)	20, 87, 240, 363
SatI	GCNGC	4 cut(s)	9, 123, 264, 282
Sau3AI	GATC	1 cut(s)	160
Sau96I	GGNCC	1 cut(s)	274
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	8 cut(s)	19, 55, 112, 119, 216, 268, 286, 363
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	1 cut(s)	279
SinI	GGWCC	1 cut(s)	274
SmlI	CTYRAG	2 cut(s)	12, 370
SmoI	CTYRAG	2 cut(s)	12, 370
Sse9I	AATT	1 cut(s)	226
SsiI	CCGC	1 cut(s)	247
SspI	AATATT	1 cut(s)	259
StyI	CCWWGG	2 cut(s)	29, 141
TaaI	ACNGT	1 cut(s)	380
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	1 cut(s)	222
TasI	AATT	1 cut(s)	226
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	4 cut(s)	20, 87, 240, 363
Tru9I	TTAA	4 cut(s)	20, 87, 240, 363
TscAI	CASTG	1 cut(s)	276
TseFI	GTSAC	1 cut(s)	380
TseI	GCWGC	4 cut(s)	8, 122, 263, 281
Tsp45I	GTSAC	1 cut(s)	380
TspDTI	ATGAA	2 cut(s)	57, 143
TspRI	CASTG	1 cut(s)	276
Van91I	CCANNNNNTGG	1 cut(s)	82
VpaK11BI	GGWCC	1 cut(s)	274
XcmI	CCANNNNNNNNNTGG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.