Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001412

Physical Location & Seq

Genomic Coordinates Forward (+)

1826428 .. 1828965

Gene Structure 2538 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031079

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGACAACAGCAATTGCTATTGAAGATGTCCGTAGAGAGGAAAAAATACTGAAAGCATTATCTGGACATAAGAATCTAGTCAGATTTTACGATGCATTTGAGGATGCCAATAATGTCTACATAGTCATGGAGTTGTGTGAAGGTGGAGAACTACTGGATAAAATTTTGTCTAGGGGTGGAAGATACACAGAAGAAGATGCTAAAGTTATTGTGCATGTTGTTCATCGTGATGTAAAGCCAGAGAACCTTAGTTCTATTTGTGCAGATCAACGCCTCAATGATATTGTTGGTAGTGCATACTATGTTGCACCTGAAGTGCTACGTAGATCCTACAGTGTTGAAGCAGATATGTGGAGCATAGGGGCTCTTTCCAAGGCTATGACAGAAGATGAGCTCTACTATCTTAGGGCTCAGTTTACGCTCTTGAACCCAAACATGGATACGTGTCCCTCGATAATTTTAGAACGGTTAGTCATGGTTGTTTTCACTGGGGGCAGTACACAACCAGGAACAACAAAACCTGATAAGGGGGAGCGCCACCCTTACTCTGTACTAGAGTCTGAGCGTAGACGTGAAGTCAGTATACCATCTGTTATCTACATACAAAAGATTTTGAGGCGAAGGCCATTTCTGATAAAGAATCTCGAAAATGTCTTCCTTCAGTCATTGGAGCTTTTTGTGGAAAATGAAAGGAAGAAGCTGGCATTTTGCACAGCACTTGCATTCTCTCAAAAGCTATCAGGACTTACACTGGAAACGGTGTTCCAGCCAATGCTCATATTGGAAAAAGTTGGTAATATTAGTTGTTTCATTTACAGATACCTATTATTAGAAAGATGGCTCTGCAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

285

Amino Acids

32.57

Weight (kDa)

6.48

Isoelectric Point (pI)

49.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	6 - 66	8.8e-07	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	8 - 135	2.2e-20	Protein kinase domain
HEAT_5MP1_2	PF25504	155 - 258	5.2e-19	5MP1/2 HEAT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49370 AT5G24430
fragaria_vesca	FvH4_7g32610 FvH4_7g32610
malus_domestica	MD01G1227200.v1.1 MD07G1297500.v1.1
prunus_persica	Prupe.2G317200_v2.0.a1 Prupe.2G317200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0382501 RchiOBHm_Chr2g0138551 RchiOBHm_Chr2g0138561 RchiOBHm_Chr2g0161821 RchiOBHm_Chr6g0303421
rosa_laevigata	RLG00000007574 RLG00000010752 RLG00000023924 RLG00000026171 RLG00000031079 RLG00000034979 RLG00000035703 RLG00000036307
rosa_multiflora	Rmu_sc0000110.1_g000053 Rmu_sc0000110.1_g000055 Rmu_sc0003696.1_g000002 Rmu_sc0029402.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111900 Rroxscaffold_4G00278000 Rroxscaffold_7G00202700
rosa_rugosa	Rorug01G0435000
rosa_samantha	Rh1AG262900 Rh1AG460000 Rh1BG182300 Rh1BG416200 Rh1CG430000 Rh1DG212400 Rh1DG448600 Rh2AG553600 Rh2BG637900 Rh4AG140900 Rh4CG147700 Rh4CG147800 Rh5CG368300 Rh5CG374200 Rh6AG435500 Rh6CG169600 Rh6CG190900 Rh6DG161600 Rh7BG358800 Rh7CG197800 Rh7CG451800
rosa_wichuraiana	Rw1G001490 Rw1G041160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	117, 568, 583
AclWI	GGATC	1 cut(s)	321
AcsI	RAATTY	1 cut(s)	162
AcuI	CTGAAG	2 cut(s)	333, 644
AfaI	GTAC	2 cut(s)	499, 552
AfiI	CCNNNNNNNGG	3 cut(s)	37, 436, 527
AflIII	ACRYGT	1 cut(s)	443
AgsI	TTSAA	3 cut(s)	23, 341, 427
AhdI	GACNNNNNGTC	1 cut(s)	575
AjiI	CACGTC	1 cut(s)	572
AjnI	CCWGG	1 cut(s)	505
AloI	GAACNNNNNNTCC	2 cut(s)	746, 778
AluBI	AGCT	4 cut(s)	394, 673, 700, 736
AluI	AGCT	4 cut(s)	394, 673, 700, 736
Alw21I	GWGCWC	1 cut(s)	396
AlwI	GGATC	1 cut(s)	321
AoxI	GGCC	1 cut(s)	623
ApoI	RAATTY	1 cut(s)	162
AspLEI	GCGC	1 cut(s)	537
BanII	GRGCYC	3 cut(s)	367, 396, 412
BarI	GAAGNNNNNNTAC	2 cut(s)	567, 599
BbsI	GAAGAC	1 cut(s)	646
Bbv12I	GWGCWC	1 cut(s)	396
BccI	CCATC	2 cut(s)	595, 831
BciT130I	CCWGG	1 cut(s)	507
BciVI	GTATCC	1 cut(s)	433
BfaI	CTAG	3 cut(s)	77, 171, 554
BfmI	CTRYAG	1 cut(s)	331
BfoI	RGCGCY	1 cut(s)	538
BfuI	GTATCC	1 cut(s)	433
Bme1390I	CCNGG	1 cut(s)	507
BmeRI	GACNNNNNGTC	1 cut(s)	575
BmgBI	CACGTC	1 cut(s)	572
BmrFI	CCNGG	1 cut(s)	507
BmrI	ACTGGG	1 cut(s)	498
BmsI	GCATC	3 cut(s)	82, 94, 187
BmuI	ACTGGG	1 cut(s)	498
BpiI	GAAGAC	1 cut(s)	646
BsaAI	YACGTR	2 cut(s)	323, 444
BsaJI	CCNNGG	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 436, 527
Bse1I	ACTGG	3 cut(s)	159, 493, 756
BseBI	CCWGG	1 cut(s)	507
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	3 cut(s)	37, 436, 527
BseMII	CTCAG	2 cut(s)	425, 552
BseNI	ACTGG	3 cut(s)	159, 493, 756
BsgI	GTGCAG	1 cut(s)	282
BshFI	GGCC	1 cut(s)	625
BsiHKAI	GWGCWC	1 cut(s)	396
BslFI	GGGAC	1 cut(s)	432
BslI	CCNNNNNNNGG	3 cut(s)	37, 436, 527
BsmFI	GGGAC	1 cut(s)	432
BsmI	GAATGC	1 cut(s)	722
BsnI	GGCC	1 cut(s)	625
Bsp1286I	GDGCHC	3 cut(s)	367, 396, 412
Bsp143I	GATC	2 cut(s)	265, 326
BspANI	GGCC	1 cut(s)	625
BspCNI	CTCAG	2 cut(s)	424, 553
BspPI	GGATC	1 cut(s)	321
BsrI	ACTGG	3 cut(s)	159, 493, 756
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	2 cut(s)	265, 326
BssNAI	GTATAC	1 cut(s)	584
BssT1I	CCWWGG	1 cut(s)	372
Bst1107I	GTATAC	1 cut(s)	584
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	3 cut(s)	335, 468, 760
BstBAI	YACGTR	2 cut(s)	323, 444
BstC8I	GCNNGC	1 cut(s)	702
BstDEI	CTNAG	4 cut(s)	248, 404, 411, 561
BstF5I	GGATG	1 cut(s)	109
BstH2I	RGCGCY	1 cut(s)	538
BstHHI	GCGC	1 cut(s)	537
BstKTI	GATC	2 cut(s)	268, 329
BstMBI	GATC	2 cut(s)	265, 326
BstNI	CCWGG	1 cut(s)	507
BstNSI	RCATGY	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	505
BstSFI	CTRYAG	1 cut(s)	331
BstSNI	TACGTA	1 cut(s)	323
BstV2I	GAAGAC	1 cut(s)	646
BstX2I	RGATCY	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	326
BstZ17I	GTATAC	1 cut(s)	584
BsuI	GTATCC	1 cut(s)	433
BsuRI	GGCC	1 cut(s)	625
BtrI	CACGTC	1 cut(s)	572
BtsCI	GGATG	1 cut(s)	109
BtsIMutI	CAGTG	3 cut(s)	340, 486, 749
Cac8I	GCNNGC	1 cut(s)	702
CfoI	GCGC	1 cut(s)	537
Csp6I	GTAC	2 cut(s)	498, 551
CviAII	CATG	4 cut(s)	127, 215, 436, 475
CviQI	GTAC	2 cut(s)	498, 551
DdeI	CTNAG	4 cut(s)	248, 404, 411, 561
DpnI	GATC	2 cut(s)	267, 328
DpnII	GATC	2 cut(s)	265, 326
DriI	GACNNNNNGTC	1 cut(s)	575
Eam1105I	GACNNNNNGTC	1 cut(s)	575
Ecl136II	GAGCTC	1 cut(s)	394
Eco105I	TACGTA	1 cut(s)	323
Eco130I	CCWWGG	1 cut(s)	372
Eco24I	GRGCYC	3 cut(s)	367, 396, 412
Eco53kI	GAGCTC	1 cut(s)	394
Eco57I	CTGAAG	2 cut(s)	333, 644
EcoICRI	GAGCTC	1 cut(s)	394
EcoRII	CCWGG	1 cut(s)	505
EcoT14I	CCWWGG	1 cut(s)	372
EcoT22I	ATGCAT	1 cut(s)	97
EcoT38I	GRGCYC	3 cut(s)	367, 396, 412
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	4 cut(s)	130, 218, 439, 478
FaqI	GGGAC	1 cut(s)	432
FatI	CATG	4 cut(s)	126, 214, 435, 474
FblI	GTMKAC	3 cut(s)	117, 568, 583
FokI	GGATG	1 cut(s)	116
FriOI	GRGCYC	3 cut(s)	367, 396, 412
FspBI	CTAG	3 cut(s)	77, 171, 554
GlaI	GCGC	1 cut(s)	536
HaeII	RGCGCY	1 cut(s)	538
HaeIII	GGCC	1 cut(s)	625
HhaI	GCGC	1 cut(s)	537
Hin1II	CATG	4 cut(s)	130, 218, 439, 478
Hin6I	GCGC	1 cut(s)	535
HinP1I	GCGC	1 cut(s)	535
HinfI	GANTC	3 cut(s)	73, 557, 640
Hpy166II	GTNNAC	5 cut(s)	118, 417, 500, 569, 584
Hpy188I	TCNGA	3 cut(s)	83, 562, 633
Hpy188III	TCNNGA	5 cut(s)	63, 227, 424, 644, 741
Hpy8I	GTNNAC	5 cut(s)	118, 417, 500, 569, 584
HpyAV	CCTTC	3 cut(s)	134, 615, 668
HpyCH4III	ACNGT	3 cut(s)	335, 468, 760
HpyCH4IV	ACGT	3 cut(s)	322, 443, 571
HpyCH4V	TGCA	8 cut(s)	95, 214, 263, 296, 308, 711, 722, 846
HpyF3I	CTNAG	4 cut(s)	248, 404, 411, 561
HpySE526I	ACGT	3 cut(s)	322, 443, 571
Hsp92II	CATG	4 cut(s)	130, 218, 439, 478
HspAI	GCGC	1 cut(s)	535
Kzo9I	GATC	2 cut(s)	265, 326
LmnI	GCTCC	3 cut(s)	354, 532, 670
LweI	GCATC	3 cut(s)	82, 94, 187
MaeI	CTAG	3 cut(s)	77, 171, 554
MaeII	ACGT	3 cut(s)	322, 443, 571
MalI	GATC	2 cut(s)	267, 328
MboI	GATC	2 cut(s)	265, 326
MboII	GAAGA	7 cut(s)	35, 192, 203, 206, 398, 646, 706
MfeI	CAATTG	1 cut(s)	12
MflI	RGATCY	1 cut(s)	326
MhlI	GDGCHC	3 cut(s)	367, 396, 412
MluCI	AATT	3 cut(s)	12, 162, 456
MlyI	GAGTC	1 cut(s)	566
MnlI	CCTC	5 cut(s)	31, 94, 284, 460, 609
Mph1103I	ATGCAT	1 cut(s)	97
MslI	CAYNNNNRTG	2 cut(s)	125, 228
MspR9I	CCNGG	1 cut(s)	507
MunI	CAATTG	1 cut(s)	12
Mva1269I	GAATGC	1 cut(s)	722
MvaI	CCWGG	1 cut(s)	507
NdeII	GATC	2 cut(s)	265, 326
NlaIII	CATG	4 cut(s)	130, 218, 439, 478
NsiI	ATGCAT	1 cut(s)	97
NspI	RCATGY	1 cut(s)	218
PcsI	WCGNNNNNNNCGW	1 cut(s)	449
PctI	GAATGC	1 cut(s)	722
PfeI	GAWTC	2 cut(s)	73, 640
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
Ppu21I	YACGTR	2 cut(s)	323, 444
Psp124BI	GAGCTC	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	505
PspGI	CCWGG	1 cut(s)	505
PsuI	RGATCY	1 cut(s)	326
RsaI	GTAC	2 cut(s)	499, 552
RsaNI	GTAC	2 cut(s)	498, 551
RseI	CAYNNNNRTG	2 cut(s)	125, 228
SacI	GAGCTC	1 cut(s)	396
Sau3AI	GATC	2 cut(s)	265, 326
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	1 cut(s)	507
SduI	GDGCHC	3 cut(s)	367, 396, 412
SfaNI	GCATC	3 cut(s)	82, 94, 187
SfcI	CTRYAG	1 cut(s)	331
SmiMI	CAYNNNNRTG	2 cut(s)	125, 228
SnaBI	TACGTA	1 cut(s)	323
Sse9I	AATT	3 cut(s)	12, 162, 456
SspI	AATATT	1 cut(s)	799
SspMI	CTAG	3 cut(s)	77, 171, 554
SstI	GAGCTC	1 cut(s)	396
StyD4I	CCNGG	1 cut(s)	505
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	3 cut(s)	335, 468, 760
TaiI	ACGT	3 cut(s)	325, 446, 574
TaqI	TCGA	2 cut(s)	452, 645
TasI	AATT	3 cut(s)	12, 162, 456
TatI	WGTACW	2 cut(s)	497, 550
TfiI	GAWTC	2 cut(s)	73, 640
TscAI	CASTG	3 cut(s)	340, 493, 756
TspDTI	ATGAA	3 cut(s)	212, 702, 799
TspGWI	ACGGA	1 cut(s)	20
TspRI	CASTG	3 cut(s)	340, 493, 756
XapI	RAATTY	1 cut(s)	162
XceI	RCATGY	1 cut(s)	218
XmiI	GTMKAC	3 cut(s)	117, 568, 583
XspI	CTAG	3 cut(s)	77, 171, 554
Zsp2I	ATGCAT	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.