Rh5CG368300

Endoplasmic reticulum-Golgi intermediate compartment protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
45935349 .. 45936591
1243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG368300.1

Sequence Viewer

Length: 324 bp
ATGGAGAATATGTTGAACAAGCTACGGACCAACCCCAAAATCAATGAAGATTTCTACAGTGGTAGCCTTCCCGGCGACGTCATCACTCTCGCCTCCTCCATCGTTATGCTTCTGCTCTTCTTCGAGGTCGTTCCACAGCATCCCTTATTCCTCTTTTCCCTTTGTTTTCCTCTCTCTCTCTCTCTCTCTCCCCCTAATCAAAAAGGGGTTCTGAAACGCGTCGAGCCTTCCTCATCGCCTCCGACTCTCCGATCCCTCTTCGACTTGGTTTATGAGATGACAACAGCAATAGCTATTGAAGATGTCCGTAGAGAGGTTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

107

Amino Acids

12.01

Weight (kDa)

5.26

Isoelectric Point (pI)

59.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 81
AccII CGCG 1 cut(s) 219
AclWI GGATC 1 cut(s) 246
AcyI GRCGYC 1 cut(s) 78
AfiI CCNNNNNNNGG 1 cut(s) 313
AflIII ACRYGT 1 cut(s) 217
AgsI TTSAA 2 cut(s) 16, 299
AluBI AGCT 2 cut(s) 22, 293
AluI AGCT 2 cut(s) 22, 293
AlwI GGATC 1 cut(s) 246
AspS9I GGNCC 1 cut(s) 27
AsuC2I CCSGG 1 cut(s) 72
AvaII GGWCC 1 cut(s) 27
BccI CCATC 1 cut(s) 107
BcnI CCSGG 1 cut(s) 72
BfmI CTRYAG 1 cut(s) 55
BglI GCCNNNNNGGC 1 cut(s) 72
Bme1390I CCNGG 1 cut(s) 72
Bme18I GGWCC 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 27
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 148
BplI GAGNNNNNCTC 2 cut(s) 215, 247
BpuMI CCSGG 1 cut(s) 72
BsaHI GRCGYC 1 cut(s) 78
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 313
BseGI GGATG 1 cut(s) 139
BseLI CCNNNNNNNGG 1 cut(s) 313
BseRI GAGGAG 1 cut(s) 85
Bsh1236I CGCG 1 cut(s) 219
BsiSI CCGG 1 cut(s) 72
BslI CCNNNNNNNGG 1 cut(s) 313
Bsp143I GATC 1 cut(s) 251
BspFNI CGCG 1 cut(s) 219
BspPI GGATC 1 cut(s) 246
BspQI GCTCTTC 1 cut(s) 122
BssMI GATC 1 cut(s) 251
BssNI GRCGYC 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 59
Bst6I CTCTTC 2 cut(s) 122, 263
BstACI GRCGYC 1 cut(s) 78
BstF5I GGATG 1 cut(s) 139
BstFNI CGCG 1 cut(s) 219
BstKTI GATC 1 cut(s) 254
BstMBI GATC 1 cut(s) 251
BstMWI GCNNNNNNNGC 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 70
BstSFI CTRYAG 1 cut(s) 55
BstUI CGCG 1 cut(s) 219
BtgZI GCGATG 1 cut(s) 219
BtsCI GGATG 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 64
Cfr13I GGNCC 1 cut(s) 27
CseI GACGC 1 cut(s) 208
CviJI RGCY 4 cut(s) 22, 66, 226, 293
CviKI_1 RGCY 4 cut(s) 22, 66, 226, 293
DpnI GATC 1 cut(s) 253
DpnII GATC 1 cut(s) 251
Eam1104I CTCTTC 2 cut(s) 122, 263
EarI CTCTTC 2 cut(s) 122, 263
Eco47I GGWCC 1 cut(s) 27
FaiI YATR 3 cut(s) 11, 107, 273
FokI GGATG 1 cut(s) 126
HapII CCGG 1 cut(s) 72
HgaI GACGC 1 cut(s) 208
Hin1I GRCGYC 1 cut(s) 78
HinfI GANTC 1 cut(s) 244
HpaII CCGG 1 cut(s) 72
Hpy188I TCNGA 3 cut(s) 213, 243, 251
Hpy99I CGWCG 2 cut(s) 80, 224
HpyAV CCTTC 2 cut(s) 77, 237
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4IV ACGT 1 cut(s) 78
HpyF10VI GCNNNNNNNGC 1 cut(s) 72
HpySE526I ACGT 1 cut(s) 78
Hsp92I GRCGYC 1 cut(s) 78
Kzo9I GATC 1 cut(s) 251
LguI GCTCTTC 1 cut(s) 122
LpnPI CCDG 1 cut(s) 85
LweI GCATC 1 cut(s) 148
MaeII ACGT 1 cut(s) 78
MalI GATC 1 cut(s) 253
MboI GATC 1 cut(s) 251
MboII GAAGA 5 cut(s) 59, 109, 112, 250, 311
MluI ACGCGT 1 cut(s) 217
MlyI GAGTC 1 cut(s) 238
MmeI TCCRAC 1 cut(s) 266
MnlI CCTC 9 cut(s) 103, 106, 118, 161, 180, 241, 249, 266, 307
MslI CAYNNNNRTG 1 cut(s) 104
MspI CCGG 1 cut(s) 72
MspR9I CCNGG 1 cut(s) 72
MvnI CGCG 1 cut(s) 219
MwoI GCNNNNNNNGC 1 cut(s) 72
NciI CCSGG 1 cut(s) 72
NdeII GATC 1 cut(s) 251
PciSI GCTCTTC 1 cut(s) 122
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
PspPI GGNCC 1 cut(s) 27
RseI CAYNNNNRTG 1 cut(s) 104
SapI GCTCTTC 1 cut(s) 122
Sau3AI GATC 1 cut(s) 251
Sau96I GGNCC 1 cut(s) 27
SchI GAGTC 1 cut(s) 238
ScrFI CCNGG 1 cut(s) 72
SetI ASST 5 cut(s) 24, 81, 129, 295, 318
SfaNI GCATC 1 cut(s) 148
SfcI CTRYAG 1 cut(s) 55
SgeI CNNG 8 cut(s) 31, 83, 84, 101, 136, 230, 235, 277
SinI GGWCC 1 cut(s) 27
SmiMI CAYNNNNRTG 1 cut(s) 104
StyD4I CCNGG 1 cut(s) 70
TaaI ACNGT 1 cut(s) 59
TaiI ACGT 1 cut(s) 81
TaqI TCGA 3 cut(s) 123, 222, 261
TscAI CASTG 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 60
TspGWI ACGGA 2 cut(s) 40, 296
TspRI CASTG 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 27
ZraI GACGTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.