Rh6AG435500

CDPK-related kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
62504157 .. 62518693
14537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG435500.1

Sequence Viewer

Length: 288 bp
ATGGAGTACGTGTTGTGTAAAGGTGGAGAACTACTAGATAAAATTTTGTCCAGGGGTGGAAGATACACAGAAGAAGATGCTAAAGTTATTGTTGTGCAAATTTTAAGTGTTATTGCCTATTGTCATCTTCAAGATGTTGTGCATTGTGATCTAAAGCCAGAGAATTTTCTTTTTGCCACAAGAGAAGAGGATGCTTCAGTGAGGGTTATTGATTTTGGTCTCTCCGATTTTATAAGGCCTGAACGCCACTGCATCAAGGTTCAATATGTTATAGTAAGATTTCATTAA

Protein Analysis

95

Amino Acids

11.0

Weight (kDa)

5.75

Isoelectric Point (pI)

33.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 5 - 83 1.7e-19 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 5 - 80 2.7e-07 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 233
AcsI RAATTY 3 cut(s) 42, 99, 163
AcuI CTGAAG 1 cut(s) 180
AfaI GTAC 1 cut(s) 8
AflIII ACRYGT 1 cut(s) 9
AgsI TTSAA 2 cut(s) 131, 263
AjnI CCWGG 1 cut(s) 50
Alw26I GTCTC 1 cut(s) 224
AoxI GGCC 1 cut(s) 236
ApoI RAATTY 3 cut(s) 42, 99, 163
BciT130I CCWGG 1 cut(s) 52
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 1 cut(s) 35
Bme1390I CCNGG 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 52
BmsI GCATC 3 cut(s) 67, 181, 261
BsaAI YACGTR 1 cut(s) 10
BsaI GGTCTC 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 51
BsaXI ACNNNNNCTCC 1 cut(s) 26
BseBI CCWGG 1 cut(s) 52
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 1 cut(s) 196
BshFI GGCC 1 cut(s) 238
BsmAI GTCTC 1 cut(s) 224
BsnI GGCC 1 cut(s) 238
Bso31I GGTCTC 1 cut(s) 224
Bsp143I GATC 1 cut(s) 148
BspANI GGCC 1 cut(s) 238
BspTNI GGTCTC 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 1 cut(s) 148
Bst2UI CCWGG 1 cut(s) 52
Bst6I CTCTTC 1 cut(s) 180
BstBAI YACGTR 1 cut(s) 10
BstF5I GGATG 1 cut(s) 196
BstKTI GATC 1 cut(s) 151
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 1 cut(s) 148
BstNI CCWGG 1 cut(s) 52
BstSCI CCNGG 1 cut(s) 50
BsuRI GGCC 1 cut(s) 238
BtsCI GGATG 1 cut(s) 196
BtsI GCAGTG 1 cut(s) 247
BtsIMutI CAGTG 2 cut(s) 204, 247
Csp6I GTAC 1 cut(s) 7
CviJI RGCY 2 cut(s) 157, 238
CviKI_1 RGCY 2 cut(s) 157, 238
CviQI GTAC 1 cut(s) 7
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Eco147I AGGCCT 1 cut(s) 238
Eco31I GGTCTC 1 cut(s) 224
Eco57I CTGAAG 1 cut(s) 180
EcoRII CCWGG 1 cut(s) 50
FaiI YATR 3 cut(s) 233, 267, 272
FokI GGATG 1 cut(s) 203
FspBI CTAG 1 cut(s) 35
HaeIII GGCC 1 cut(s) 238
Hpy188I TCNGA 1 cut(s) 226
Hpy188III TCNNGA 1 cut(s) 131
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 3 cut(s) 97, 142, 252
HpySE526I ACGT 1 cut(s) 9
Kzo9I GATC 1 cut(s) 148
LpnPI CCDG 4 cut(s) 37, 64, 171, 252
LweI GCATC 3 cut(s) 67, 181, 261
MaeI CTAG 1 cut(s) 35
MaeII ACGT 1 cut(s) 9
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 5 cut(s) 72, 83, 86, 119, 197
MluCI AATT 3 cut(s) 42, 99, 163
MnlI CCTC 2 cut(s) 181, 195
MseI TTAA 2 cut(s) 104, 286
MspR9I CCNGG 1 cut(s) 52
MvaI CCWGG 1 cut(s) 52
NdeII GATC 1 cut(s) 148
PceI AGGCCT 1 cut(s) 238
Ppu21I YACGTR 1 cut(s) 10
PsiI TTATAA 1 cut(s) 233
Psp6I CCWGG 1 cut(s) 50
PspGI CCWGG 1 cut(s) 50
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SaqAI TTAA 2 cut(s) 104, 286
Sau3AI GATC 1 cut(s) 148
ScrFI CCNGG 1 cut(s) 52
SetI ASST 3 cut(s) 12, 25, 261
SfaNI GCATC 3 cut(s) 67, 181, 261
SgeI CNNG 9 cut(s) 22, 47, 63, 64, 143, 170, 192, 251, 268
Sse9I AATT 3 cut(s) 42, 99, 163
SseBI AGGCCT 1 cut(s) 238
SspMI CTAG 1 cut(s) 35
StuI AGGCCT 1 cut(s) 238
StyD4I CCNGG 1 cut(s) 50
TaiI ACGT 1 cut(s) 12
TasI AATT 3 cut(s) 42, 99, 163
Tru1I TTAA 2 cut(s) 104, 286
Tru9I TTAA 2 cut(s) 104, 286
TscAI CASTG 2 cut(s) 204, 254
TspDTI ATGAA 1 cut(s) 272
TspRI CASTG 2 cut(s) 204, 254
XapI RAATTY 3 cut(s) 42, 99, 163
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.