Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001412

Physical Location & Seq

Genomic Coordinates Reverse (-)

70544226 .. 70547268

Gene Structure 3043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035703

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGAGAATGTGTTGAACAAGCTATGGACCAACCCCAAAATCAATGAAGATTTCTACAGTGGTAGCCTCCCCGGCGGCGTCATCACTCTCGCCTCCTCCATCGTTATGCTTCTGCTCTTCTTCGAGGTCGTACCACAGCATCCCTTATTCCTCTTTTCCCTTTGTTTTCTTCTCTCTCTCTCTCTCCCCCCTCCCTCTAATCAAAAAGGGGTTCTGAAACGCTTCGAGCCTTCCTCATCGCCTTCGACTCTCCGATCCCTCTTCGACTTGGTTTATGAGATGACAACAGCAATAGCTATTGAAGATGTCCGTAGAGAGGTAAAAATACTGAAAGCATTATCTAGACATAAGAATCTGGTCAGATTTTATGATGCATTTGAGGATGCCAATAATGTCTACATAGTCATGGAGTTGTGTAAAGGTGGAGAACTACTGGATAAAATTTTGTCCAGGGGTGGAAGATACACAGAAGAAGATGCTAAAGTTATTGTTGTGCAAATTTTAAGTGTTATTGCCTATTGTCATCTTCAAGATATTGTGCATTGTGATCTAAAGCCAGAGAATTTTCTTTTTGCCACAAGAGAAGAGGATGCTTCAGTGACGGTTATTGATTTTGGTCTCTCCGATTTTATAAGACCTGGATATACGTTTTTCTGTGGATTGTCAAAATGTAAGAGCGTTGTTGTGCTTCCATGGATACCACTTACAACAGTTGCTGTGGCTCTTAGGCTCATGGAGTTTGATATATGTGGCCATCGTAAACATGCTACAGAAGAAGCTGGAGACTCAGAAGAACAAGGAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

269

Amino Acids

30.13

Weight (kDa)

5.32

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	95 - 212	2.3e-17	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	101 - 216	1.5e-32	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49370 AT5G24430
fragaria_vesca	FvH4_7g32610 FvH4_7g32610
malus_domestica	MD01G1227200.v1.1 MD07G1297500.v1.1
prunus_persica	Prupe.2G317200_v2.0.a1 Prupe.2G317200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0382501 RchiOBHm_Chr2g0138551 RchiOBHm_Chr2g0138561 RchiOBHm_Chr2g0161821 RchiOBHm_Chr6g0303421
rosa_laevigata	RLG00000007574 RLG00000010752 RLG00000023924 RLG00000026171 RLG00000031079 RLG00000034979 RLG00000035703 RLG00000036307
rosa_multiflora	Rmu_sc0000110.1_g000053 Rmu_sc0000110.1_g000055 Rmu_sc0003696.1_g000002 Rmu_sc0029402.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111900 Rroxscaffold_4G00278000 Rroxscaffold_7G00202700
rosa_rugosa	Rorug01G0435000
rosa_samantha	Rh1AG262900 Rh1AG460000 Rh1BG182300 Rh1BG416200 Rh1CG430000 Rh1DG212400 Rh1DG448600 Rh2AG553600 Rh2BG637900 Rh4AG140900 Rh4CG147700 Rh4CG147800 Rh5CG368300 Rh5CG374200 Rh6AG435500 Rh6CG169600 Rh6CG190900 Rh6DG161600 Rh7BG358800 Rh7CG197800 Rh7CG451800
rosa_wichuraiana	Rw1G001490 Rw1G041160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	632
AccI	GTMKAC	1 cut(s)	396
AciI	CCGC	1 cut(s)	75
AclWI	GGATC	1 cut(s)	249
AcoI	YGGCCR	1 cut(s)	751
AcsI	RAATTY	3 cut(s)	441, 498, 562
AcuI	CTGAAG	1 cut(s)	579
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	1 cut(s)	132
AfiI	CCNNNNNNNGG	1 cut(s)	316
AgsI	TTSAA	3 cut(s)	16, 302, 530
AjnI	CCWGG	2 cut(s)	449, 637
AluBI	AGCT	3 cut(s)	22, 296, 779
AluI	AGCT	3 cut(s)	22, 296, 779
Alw26I	GTCTC	2 cut(s)	623, 777
AlwI	GGATC	1 cut(s)	249
AlwNI	CAGNNNCTG	1 cut(s)	716
AoxI	GGCC	1 cut(s)	751
ApoI	RAATTY	3 cut(s)	441, 498, 562
Asp700I	GAANNNNTTC	1 cut(s)	221
AspS9I	GGNCC	1 cut(s)	27
AsuC2I	CCSGG	1 cut(s)	72
AvaII	GGWCC	1 cut(s)	27
BalI	TGGCCA	1 cut(s)	753
BccI	CCATC	2 cut(s)	107, 762
BciT130I	CCWGG	2 cut(s)	451, 639
BciVI	GTATCC	1 cut(s)	690
BcnI	CCSGG	1 cut(s)	72
BcoDI	GTCTC	2 cut(s)	623, 777
BfaI	CTAG	1 cut(s)	342
BfmI	CTRYAG	2 cut(s)	55, 768
BfuI	GTATCC	1 cut(s)	690
BglI	GCCNNNNNGGC	1 cut(s)	72
BisI	GCNGC	1 cut(s)	76
BlsI	GCNGC	1 cut(s)	77
Bme1390I	CCNGG	3 cut(s)	72, 451, 639
Bme18I	GGWCC	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	27
BmrFI	CCNGG	3 cut(s)	72, 451, 639
BmsI	GCATC	5 cut(s)	148, 361, 373, 466, 580
BplI	GAGNNNNNCTC	2 cut(s)	218, 250
BpmI	CTGGAG	1 cut(s)	801
BpuMI	CCSGG	1 cut(s)	72
BsaHI	GRCGYC	1 cut(s)	78
BsaI	GGTCTC	1 cut(s)	623
BsaJI	CCNNGG	3 cut(s)	70, 450, 692
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse1I	ACTGG	1 cut(s)	438
BseBI	CCWGG	2 cut(s)	451, 639
BseDI	CCNNGG	3 cut(s)	70, 450, 692
BseGI	GGATG	3 cut(s)	139, 388, 595
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMII	CTCAG	1 cut(s)	801
BseNI	ACTGG	1 cut(s)	438
BseRI	GAGGAG	1 cut(s)	85
BshFI	GGCC	1 cut(s)	753
BsiSI	CCGG	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	2 cut(s)	623, 777
BsnI	GGCC	1 cut(s)	753
Bso31I	GGTCTC	1 cut(s)	623
Bsp143I	GATC	2 cut(s)	254, 547
Bsp19I	CCATGG	1 cut(s)	692
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	1 cut(s)	753
BspCNI	CTCAG	1 cut(s)	800
BspPI	GGATC	1 cut(s)	249
BspQI	GCTCTTC	1 cut(s)	122
BspTNI	GGTCTC	1 cut(s)	623
BsrI	ACTGG	1 cut(s)	438
BssECI	CCNNGG	3 cut(s)	70, 450, 692
BssMI	GATC	2 cut(s)	254, 547
BssNI	GRCGYC	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	692
Bst2UI	CCWGG	2 cut(s)	451, 639
Bst4CI	ACNGT	3 cut(s)	59, 604, 712
Bst6I	CTCTTC	3 cut(s)	122, 266, 579
BstACI	GRCGYC	1 cut(s)	78
BstDEI	CTNAG	2 cut(s)	725, 787
BstDSI	CCRYGG	1 cut(s)	692
BstF5I	GGATG	3 cut(s)	139, 388, 595
BstKTI	GATC	2 cut(s)	257, 550
BstMAI	GTCTC	2 cut(s)	623, 777
BstMBI	GATC	2 cut(s)	254, 547
BstMWI	GCNNNNNNNGC	1 cut(s)	72
BstNI	CCWGG	2 cut(s)	451, 639
BstNSI	RCATGY	1 cut(s)	767
BstSCI	CCNGG	3 cut(s)	70, 449, 637
BstSFI	CTRYAG	2 cut(s)	55, 768
BsuI	GTATCC	1 cut(s)	690
BsuRI	GGCC	1 cut(s)	753
BtgI	CCRYGG	1 cut(s)	692
BtgZI	GCGATG	1 cut(s)	222
BtsCI	GGATG	3 cut(s)	139, 388, 595
BtsIMutI	CAGTG	2 cut(s)	64, 603
CaiI	CAGNNNCTG	1 cut(s)	716
Cfr13I	GGNCC	1 cut(s)	27
CseI	GACGC	1 cut(s)	67
Csp6I	GTAC	1 cut(s)	131
CviAII	CATG	4 cut(s)	406, 693, 733, 764
CviJI	RGCY	9 cut(s)	22, 66, 229, 296, 556, 722, 730, 753, 779
CviKI_1	RGCY	9 cut(s)	22, 66, 229, 296, 556, 722, 730, 753, 779
CviQI	GTAC	1 cut(s)	131
DdeI	CTNAG	2 cut(s)	725, 787
DpnI	GATC	2 cut(s)	256, 549
DpnII	GATC	2 cut(s)	254, 547
EaeI	YGGCCR	1 cut(s)	751
Eam1104I	CTCTTC	3 cut(s)	122, 266, 579
EarI	CTCTTC	3 cut(s)	122, 266, 579
Eco130I	CCWWGG	1 cut(s)	692
Eco31I	GGTCTC	1 cut(s)	623
Eco47I	GGWCC	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	579
EcoRII	CCWGG	2 cut(s)	449, 637
EcoT14I	CCWWGG	1 cut(s)	692
EcoT22I	ATGCAT	1 cut(s)	376
ErhI	CCWWGG	1 cut(s)	692
FaeI	CATG	4 cut(s)	409, 696, 736, 767
FatI	CATG	4 cut(s)	405, 692, 732, 763
FblI	GTMKAC	1 cut(s)	396
Fnu4HI	GCNGC	1 cut(s)	76
FokI	GGATG	3 cut(s)	126, 395, 602
Fsp4HI	GCNGC	1 cut(s)	76
FspBI	CTAG	1 cut(s)	342
GluI	GCNGC	1 cut(s)	76
GsuI	CTGGAG	1 cut(s)	801
HaeIII	GGCC	1 cut(s)	753
HapII	CCGG	1 cut(s)	72
HgaI	GACGC	1 cut(s)	67
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	4 cut(s)	409, 696, 736, 767
HinfI	GANTC	4 cut(s)	247, 352, 785, 801
HpaII	CCGG	1 cut(s)	72
Hpy166II	GTNNAC	2 cut(s)	397, 761
Hpy188I	TCNGA	6 cut(s)	216, 254, 362, 625, 790, 806
Hpy188III	TCNNGA	2 cut(s)	342, 530
Hpy8I	GTNNAC	2 cut(s)	397, 761
HpyAV	CCTTC	2 cut(s)	240, 252
HpyCH4III	ACNGT	3 cut(s)	59, 604, 712
HpyCH4IV	ACGT	1 cut(s)	647
HpyCH4V	TGCA	3 cut(s)	374, 496, 541
HpyF10VI	GCNNNNNNNGC	1 cut(s)	72
HpyF3I	CTNAG	2 cut(s)	725, 787
HpySE526I	ACGT	1 cut(s)	647
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	4 cut(s)	409, 696, 736, 767
Kzo9I	GATC	2 cut(s)	254, 547
LguI	GCTCTTC	1 cut(s)	122
LpnPI	CCDG	9 cut(s)	85, 341, 419, 436, 463, 570, 624, 651, 765
LweI	GCATC	5 cut(s)	148, 361, 373, 466, 580
MaeI	CTAG	1 cut(s)	342
MaeII	ACGT	1 cut(s)	647
MaeIII	GTNAC	1 cut(s)	598
MalI	GATC	2 cut(s)	256, 549
MboI	GATC	2 cut(s)	254, 547
MlsI	TGGCCA	1 cut(s)	753
MluCI	AATT	3 cut(s)	441, 498, 562
MluNI	TGGCCA	1 cut(s)	753
MlyI	GAGTC	2 cut(s)	241, 779
Mox20I	TGGCCA	1 cut(s)	753
Mph1103I	ATGCAT	1 cut(s)	376
MroXI	GAANNNNTTC	1 cut(s)	221
MscI	TGGCCA	1 cut(s)	753
MseI	TTAA	1 cut(s)	503
MslI	CAYNNNNRTG	2 cut(s)	104, 404
Msp20I	TGGCCA	1 cut(s)	753
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	3 cut(s)	72, 451, 639
MvaI	CCWGG	2 cut(s)	451, 639
MwoI	GCNNNNNNNGC	1 cut(s)	72
NciI	CCSGG	1 cut(s)	72
NcoI	CCATGG	1 cut(s)	692
NdeII	GATC	2 cut(s)	254, 547
NlaIII	CATG	4 cut(s)	409, 696, 736, 767
NmuCI	GTSAC	1 cut(s)	598
NsiI	ATGCAT	1 cut(s)	376
NspI	RCATGY	1 cut(s)	767
PciSI	GCTCTTC	1 cut(s)	122
PdmI	GAANNNNTTC	1 cut(s)	221
PfeI	GAWTC	2 cut(s)	352, 801
PkrI	GCNGC	1 cut(s)	77
PleI	GAGTC	2 cut(s)	241, 779
PpsI	GAGTC	2 cut(s)	241, 779
PsiI	TTATAA	1 cut(s)	632
Psp6I	CCWGG	2 cut(s)	449, 637
PspGI	CCWGG	2 cut(s)	449, 637
PspPI	GGNCC	1 cut(s)	27
PstNI	CAGNNNCTG	1 cut(s)	716
RsaI	GTAC	1 cut(s)	132
RsaNI	GTAC	1 cut(s)	131
RseI	CAYNNNNRTG	2 cut(s)	104, 404
SapI	GCTCTTC	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	503
SatI	GCNGC	1 cut(s)	76
Sau3AI	GATC	2 cut(s)	254, 547
Sau96I	GGNCC	1 cut(s)	27
SchI	GAGTC	2 cut(s)	241, 779
ScrFI	CCNGG	3 cut(s)	72, 451, 639
SetI	ASST	8 cut(s)	24, 129, 298, 321, 424, 640, 650, 781
SfaNI	GCATC	5 cut(s)	148, 361, 373, 466, 580
SfcI	CTRYAG	2 cut(s)	55, 768
SinI	GGWCC	1 cut(s)	27
SmiMI	CAYNNNNRTG	2 cut(s)	104, 404
Sse9I	AATT	3 cut(s)	441, 498, 562
SsiI	CCGC	1 cut(s)	75
SspMI	CTAG	1 cut(s)	342
StyD4I	CCNGG	3 cut(s)	70, 449, 637
StyI	CCWWGG	1 cut(s)	692
TaaI	ACNGT	3 cut(s)	59, 604, 712
TaiI	ACGT	1 cut(s)	650
TaqI	TCGA	4 cut(s)	123, 225, 245, 264
TasI	AATT	3 cut(s)	441, 498, 562
TauI	GCSGC	1 cut(s)	78
TfiI	GAWTC	2 cut(s)	352, 801
Tru1I	TTAA	1 cut(s)	503
Tru9I	TTAA	1 cut(s)	503
TscAI	CASTG	2 cut(s)	64, 603
TseFI	GTSAC	1 cut(s)	598
Tsp45I	GTSAC	1 cut(s)	598
TspDTI	ATGAA	1 cut(s)	60
TspGWI	ACGGA	1 cut(s)	299
TspRI	CASTG	2 cut(s)	64, 603
VpaK11BI	GGWCC	1 cut(s)	27
XapI	RAATTY	3 cut(s)	441, 498, 562
XbaI	TCTAGA	1 cut(s)	341
XceI	RCATGY	1 cut(s)	767
XmiI	GTMKAC	1 cut(s)	396
XmnI	GAANNNNTTC	1 cut(s)	221
XspI	CTAG	1 cut(s)	342
Zsp2I	ATGCAT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.