Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001412

Physical Location & Seq

Genomic Coordinates Reverse (-)

78757535 .. 78761229

Gene Structure 3695 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036307

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAAGATTTCTACAGTGGTAGTCTCCCCGGCGGCGTCATCACTCTCACCTCCTCCATCATTATGCTTCTGCTCTTCTTCGAGGTCGTACCACAGCATCCCTTATTCCTCTTTTCCCTTTGTTTTCTTCTCTCTCTCTGTTCCTCCCTCTAATCAAAAAGGGGTTCTGAAACGCGTCGAGCCTTCCTCATCTCCTCCGACTCTCCGATCCCTCTTCCACTTGGTTTATGAGATGACAACATCAATAGCTATTGAAGATGTCCGTAGAGAGGTAAAACTACTGAAAGCATTATCTAGACATAAGAATCTGGTCAGATTTTATGATGCATTTGAGGATGCCAATAATGTCTACATAGTCATGGAGTTGTGTAAAGGTGGAGAACTACTGGATAAAATTTTGTCCAGGGGTGGAAGATACACAGAAGAAGATGCTAAAGTTATTGTTGTGCAAATTTTAAGTGTTATTGCCTATTGTCATCTTCAAGATGTTGTGCATTGTGATCTAAAGCCAGAGAATTTTCTTTTTGCCACAAGAGAAGAGGATGCTTCAGTGAGGGTTATTGATTTTGGTCTCGCCGATTTTATAAGGCCTGCGTTGTTGTGCTTCCATGGATACCACTTACAACAGTTGCTGTGGCTCTTAGGCTCATGGAGTTTGATATATGTGACCATCGTACACATGCTACAGAAGAAGCTAGAGACTCAGAAGAACAAGGAATCTGAGAATTTTATAAAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

247

Amino Acids

27.93

Weight (kDa)

8.17

Isoelectric Point (pI)

57.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	78 - 195	2.1e-17	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	85 - 196	1e-32	Protein kinase domain
Kdo	PF06293	89 - 189	9.1e-06	Lipopolysaccharide kinase (Kdo/WaaP) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49370 AT5G24430
fragaria_vesca	FvH4_7g32610 FvH4_7g32610
malus_domestica	MD01G1227200.v1.1 MD07G1297500.v1.1
prunus_persica	Prupe.2G317200_v2.0.a1 Prupe.2G317200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0382501 RchiOBHm_Chr2g0138551 RchiOBHm_Chr2g0138561 RchiOBHm_Chr2g0161821 RchiOBHm_Chr6g0303421
rosa_laevigata	RLG00000007574 RLG00000010752 RLG00000023924 RLG00000026171 RLG00000031079 RLG00000034979 RLG00000035703 RLG00000036307
rosa_multiflora	Rmu_sc0000110.1_g000053 Rmu_sc0000110.1_g000055 Rmu_sc0003696.1_g000002 Rmu_sc0029402.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111900 Rroxscaffold_4G00278000 Rroxscaffold_7G00202700
rosa_rugosa	Rorug01G0435000
rosa_samantha	Rh1AG262900 Rh1AG460000 Rh1BG182300 Rh1BG416200 Rh1CG430000 Rh1DG212400 Rh1DG448600 Rh2AG553600 Rh2BG637900 Rh4AG140900 Rh4CG147700 Rh4CG147800 Rh5CG368300 Rh5CG374200 Rh6AG435500 Rh6CG169600 Rh6CG190900 Rh6DG161600 Rh7BG358800 Rh7CG197800 Rh7CG451800
rosa_wichuraiana	Rw1G001490 Rw1G041160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	584, 731
AccI	GTMKAC	1 cut(s)	348
AccII	CGCG	1 cut(s)	174
AciI	CCGC	1 cut(s)	32
AclWI	GGATC	1 cut(s)	201
AcsI	RAATTY	4 cut(s)	393, 450, 514, 724
AcuI	CTGAAG	1 cut(s)	531
AcyI	GRCGYC	1 cut(s)	35
AfaI	GTAC	2 cut(s)	89, 675
AfiI	CCNNNNNNNGG	1 cut(s)	268
AflIII	ACRYGT	1 cut(s)	172
AgsI	TTSAA	2 cut(s)	254, 482
AjnI	CCWGG	1 cut(s)	401
AluBI	AGCT	2 cut(s)	248, 694
AluI	AGCT	2 cut(s)	248, 694
Alw26I	GTCTC	3 cut(s)	28, 575, 692
AlwI	GGATC	1 cut(s)	201
AlwNI	CAGNNNCTG	1 cut(s)	631
AoxI	GGCC	1 cut(s)	587
ApoI	RAATTY	4 cut(s)	393, 450, 514, 724
AsuC2I	CCSGG	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	39
BccI	CCATC	2 cut(s)	64, 677
BciT130I	CCWGG	1 cut(s)	403
BciVI	GTATCC	1 cut(s)	605
BcnI	CCSGG	1 cut(s)	29
BcoDI	GTCTC	3 cut(s)	28, 575, 692
BfaI	CTAG	2 cut(s)	294, 695
BfmI	CTRYAG	2 cut(s)	12, 683
BfuI	GTATCC	1 cut(s)	605
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
Bme1390I	CCNGG	2 cut(s)	29, 403
BmrFI	CCNGG	2 cut(s)	29, 403
BmsI	GCATC	5 cut(s)	105, 313, 325, 418, 532
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
BpuMI	CCSGG	1 cut(s)	29
BsaHI	GRCGYC	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	575
BsaJI	CCNNGG	3 cut(s)	27, 402, 607
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
Bse1I	ACTGG	1 cut(s)	390
BseBI	CCWGG	1 cut(s)	403
BseDI	CCNNGG	3 cut(s)	27, 402, 607
BseGI	GGATG	3 cut(s)	96, 340, 547
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseMII	CTCAG	2 cut(s)	711, 716
BseNI	ACTGG	1 cut(s)	390
BseRI	GAGGAG	2 cut(s)	42, 183
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	1 cut(s)	589
BsiSI	CCGG	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	268
BsmAI	GTCTC	3 cut(s)	28, 575, 692
BsnI	GGCC	1 cut(s)	589
Bso31I	GGTCTC	1 cut(s)	575
Bsp143I	GATC	2 cut(s)	206, 499
Bsp19I	CCATGG	1 cut(s)	607
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	1 cut(s)	589
BspCNI	CTCAG	2 cut(s)	712, 715
BspFNI	CGCG	1 cut(s)	174
BspPI	GGATC	1 cut(s)	201
BspQI	GCTCTTC	1 cut(s)	79
BspTNI	GGTCTC	1 cut(s)	575
BsrI	ACTGG	1 cut(s)	390
BssECI	CCNNGG	3 cut(s)	27, 402, 607
BssMI	GATC	2 cut(s)	206, 499
BssNI	GRCGYC	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	607
Bst2UI	CCWGG	1 cut(s)	403
Bst4CI	ACNGT	2 cut(s)	16, 627
Bst6I	CTCTTC	3 cut(s)	79, 218, 531
BstACI	GRCGYC	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	591
BstDEI	CTNAG	3 cut(s)	640, 702, 720
BstDSI	CCRYGG	1 cut(s)	607
BstF5I	GGATG	3 cut(s)	96, 340, 547
BstFNI	CGCG	1 cut(s)	174
BstKTI	GATC	2 cut(s)	209, 502
BstMAI	GTCTC	3 cut(s)	28, 575, 692
BstMBI	GATC	2 cut(s)	206, 499
BstNI	CCWGG	1 cut(s)	403
BstNSI	RCATGY	1 cut(s)	682
BstSCI	CCNGG	2 cut(s)	27, 401
BstSFI	CTRYAG	2 cut(s)	12, 683
BstUI	CGCG	1 cut(s)	174
BsuI	GTATCC	1 cut(s)	605
BsuRI	GGCC	1 cut(s)	589
BtgI	CCRYGG	1 cut(s)	607
BtsCI	GGATG	3 cut(s)	96, 340, 547
BtsIMutI	CAGTG	2 cut(s)	21, 555
Cac8I	GCNNGC	1 cut(s)	591
CaiI	CAGNNNCTG	1 cut(s)	631
CseI	GACGC	2 cut(s)	24, 163
Csp6I	GTAC	2 cut(s)	88, 674
CviAII	CATG	4 cut(s)	358, 608, 648, 679
CviJI	RGCY	7 cut(s)	181, 248, 508, 589, 637, 645, 694
CviKI_1	RGCY	7 cut(s)	181, 248, 508, 589, 637, 645, 694
CviQI	GTAC	2 cut(s)	88, 674
DdeI	CTNAG	3 cut(s)	640, 702, 720
DpnI	GATC	2 cut(s)	208, 501
DpnII	GATC	2 cut(s)	206, 499
Eam1104I	CTCTTC	3 cut(s)	79, 218, 531
EarI	CTCTTC	3 cut(s)	79, 218, 531
Eco130I	CCWWGG	1 cut(s)	607
Eco147I	AGGCCT	1 cut(s)	589
Eco31I	GGTCTC	1 cut(s)	575
Eco57I	CTGAAG	1 cut(s)	531
EcoRII	CCWGG	1 cut(s)	401
EcoT14I	CCWWGG	1 cut(s)	607
EcoT22I	ATGCAT	1 cut(s)	328
ErhI	CCWWGG	1 cut(s)	607
FaeI	CATG	4 cut(s)	361, 611, 651, 682
FatI	CATG	4 cut(s)	357, 607, 647, 678
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	3 cut(s)	83, 347, 554
Fsp4HI	GCNGC	1 cut(s)	33
FspBI	CTAG	2 cut(s)	294, 695
GluI	GCNGC	1 cut(s)	33
HaeIII	GGCC	1 cut(s)	589
HapII	CCGG	1 cut(s)	29
HgaI	GACGC	2 cut(s)	24, 163
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	4 cut(s)	361, 611, 651, 682
HinfI	GANTC	4 cut(s)	199, 304, 700, 716
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	1 cut(s)	39
Hpy166II	GTNNAC	2 cut(s)	349, 676
Hpy188I	TCNGA	6 cut(s)	168, 198, 206, 314, 705, 721
Hpy188III	TCNNGA	2 cut(s)	294, 482
Hpy8I	GTNNAC	2 cut(s)	349, 676
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	1 cut(s)	192
HpyCH4III	ACNGT	2 cut(s)	16, 627
HpyCH4V	TGCA	3 cut(s)	326, 448, 493
HpyF3I	CTNAG	3 cut(s)	640, 702, 720
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	4 cut(s)	361, 611, 651, 682
Kzo9I	GATC	2 cut(s)	206, 499
LguI	GCTCTTC	1 cut(s)	79
LpnPI	CCDG	7 cut(s)	42, 293, 371, 388, 415, 522, 603
LweI	GCATC	5 cut(s)	105, 313, 325, 418, 532
MaeI	CTAG	2 cut(s)	294, 695
MaeIII	GTNAC	1 cut(s)	664
MalI	GATC	2 cut(s)	208, 501
MboI	GATC	2 cut(s)	206, 499
MluCI	AATT	4 cut(s)	393, 450, 514, 724
MluI	ACGCGT	1 cut(s)	172
MlyI	GAGTC	2 cut(s)	193, 694
MmeI	TCCRAC	1 cut(s)	221
Mph1103I	ATGCAT	1 cut(s)	328
MseI	TTAA	1 cut(s)	455
MslI	CAYNNNNRTG	2 cut(s)	61, 356
MspI	CCGG	1 cut(s)	29
MspR9I	CCNGG	2 cut(s)	29, 403
MvaI	CCWGG	1 cut(s)	403
MvnI	CGCG	1 cut(s)	174
NciI	CCSGG	1 cut(s)	29
NcoI	CCATGG	1 cut(s)	607
NdeII	GATC	2 cut(s)	206, 499
NlaIII	CATG	4 cut(s)	361, 611, 651, 682
NmuCI	GTSAC	1 cut(s)	664
NsiI	ATGCAT	1 cut(s)	328
NspI	RCATGY	1 cut(s)	682
PceI	AGGCCT	1 cut(s)	589
PciSI	GCTCTTC	1 cut(s)	79
PfeI	GAWTC	2 cut(s)	304, 716
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	2 cut(s)	193, 694
PpsI	GAGTC	2 cut(s)	193, 694
PsiI	TTATAA	2 cut(s)	584, 731
Psp6I	CCWGG	1 cut(s)	401
PspGI	CCWGG	1 cut(s)	401
PstNI	CAGNNNCTG	1 cut(s)	631
RsaI	GTAC	2 cut(s)	89, 675
RsaNI	GTAC	2 cut(s)	88, 674
RseI	CAYNNNNRTG	2 cut(s)	61, 356
SapI	GCTCTTC	1 cut(s)	79
SaqAI	TTAA	1 cut(s)	455
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	2 cut(s)	206, 499
SchI	GAGTC	2 cut(s)	193, 694
ScrFI	CCNGG	2 cut(s)	29, 403
SetI	ASST	6 cut(s)	52, 86, 250, 273, 376, 696
SfaNI	GCATC	5 cut(s)	105, 313, 325, 418, 532
SfcI	CTRYAG	2 cut(s)	12, 683
SmiMI	CAYNNNNRTG	2 cut(s)	61, 356
Sse9I	AATT	4 cut(s)	393, 450, 514, 724
SseBI	AGGCCT	1 cut(s)	589
SsiI	CCGC	1 cut(s)	32
SspMI	CTAG	2 cut(s)	294, 695
StuI	AGGCCT	1 cut(s)	589
StyD4I	CCNGG	2 cut(s)	27, 401
StyI	CCWWGG	1 cut(s)	607
TaaI	ACNGT	2 cut(s)	16, 627
TaqI	TCGA	2 cut(s)	80, 177
TasI	AATT	4 cut(s)	393, 450, 514, 724
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	2 cut(s)	304, 716
Tru1I	TTAA	1 cut(s)	455
Tru9I	TTAA	1 cut(s)	455
TscAI	CASTG	2 cut(s)	21, 555
TseFI	GTSAC	1 cut(s)	664
Tsp45I	GTSAC	1 cut(s)	664
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	251
TspRI	CASTG	2 cut(s)	21, 555
XapI	RAATTY	4 cut(s)	393, 450, 514, 724
XbaI	TCTAGA	1 cut(s)	293
XceI	RCATGY	1 cut(s)	682
XmiI	GTMKAC	1 cut(s)	348
XspI	CTAG	2 cut(s)	294, 695
Zsp2I	ATGCAT	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.