Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001412

Physical Location & Seq

Genomic Coordinates Reverse (-)

17541592 .. 17547897

Gene Structure 6306 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG197800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGCTAAAGTTATTGTTGTGCAAATTTGAAGTGTTATTGCCTGTTGTCATCTTCAAGGTGCATGTTGTGCATCGTGATCTAAAGCCAGAGGCTCTTTCCAAGGCTATGACAGAAGATGAGCTCTACTATCTTAGGGCTCAGTTTACGCTCTTGGAACCCAAACATGGATACGTGTCCCTCGATAATTTCAGAACGGTTGTTTTCATTGGGGGCAGTACACAACCAGGAACAACAAAACCTGATAAGGGGGAGCGCCACCCTTACTCTGTACTAGAGTCTGAGCGTAGACGTGAAGTCAGTATACCATCTGTTATCTACATACAAAAGATTTTGAGGCGAAGGCCATTTCTGATAAAGAATCTCGAAAATGTCTTCCTTCAGTCATTGGAGCTTTTTGTGGAAAATGAAAGGAAGAAGCTGGCAATTTGCACAGCACTTGCATTCTCTCAAAAGCTATTAGGACTTACACTGGAAACGATGCACTATGGAATCAAAGTTCCAAGGCTTTGGCAAAAACAAAGAAAATCTCCAACTTCTCAGAAGAGGAAATCTCAGGTTGCAAGAGTCAATGGGGATAATTCTGTTGGAATACCACAGTTGCTTTGTCGCATAAACACATTGCAAGGAATCCGGAGTGAGTTAGAAGTTTTGGAGAAACAAATTTGGGACAGACTTTTTGAATGGATTGGGGAAGAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

233

Amino Acids

27.1

Weight (kDa)

9.63

Isoelectric Point (pI)

44.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEAT_5MP1_2	PF25504	61 - 153	1e-18	5MP1/2 HEAT domain
TPR_PATROL1	PF25761	165 - 222	3.1e-07	PATROL1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49370 AT5G24430
fragaria_vesca	FvH4_7g32610 FvH4_7g32610
malus_domestica	MD01G1227200.v1.1 MD07G1297500.v1.1
prunus_persica	Prupe.2G317200_v2.0.a1 Prupe.2G317200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0382501 RchiOBHm_Chr2g0138551 RchiOBHm_Chr2g0138561 RchiOBHm_Chr2g0161821 RchiOBHm_Chr6g0303421
rosa_laevigata	RLG00000007574 RLG00000010752 RLG00000023924 RLG00000026171 RLG00000031079 RLG00000034979 RLG00000035703 RLG00000036307
rosa_multiflora	Rmu_sc0000110.1_g000053 Rmu_sc0000110.1_g000055 Rmu_sc0003696.1_g000002 Rmu_sc0029402.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111900 Rroxscaffold_4G00278000 Rroxscaffold_7G00202700
rosa_rugosa	Rorug01G0435000
rosa_samantha	Rh1AG262900 Rh1AG460000 Rh1BG182300 Rh1BG416200 Rh1CG430000 Rh1DG212400 Rh1DG448600 Rh2AG553600 Rh2BG637900 Rh4AG140900 Rh4CG147700 Rh4CG147800 Rh5CG368300 Rh5CG374200 Rh6AG435500 Rh6CG169600 Rh6CG190900 Rh6DG161600 Rh7BG358800 Rh7CG197800 Rh7CG451800
rosa_wichuraiana	Rw1G001490 Rw1G041160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	286, 301
AccIII	TCCGGA	1 cut(s)	630
AcsI	RAATTY	2 cut(s)	23, 660
AcuI	CTGAAG	1 cut(s)	362
AfaI	GTAC	2 cut(s)	217, 270
AfiI	CCNNNNNNNGG	2 cut(s)	164, 245
AflIII	ACRYGT	1 cut(s)	171
AgsI	TTSAA	3 cut(s)	29, 55, 680
AhdI	GACNNNNNGTC	1 cut(s)	293
AjiI	CACGTC	1 cut(s)	290
AjnI	CCWGG	1 cut(s)	223
AloI	GAACNNNNNNTCC	2 cut(s)	480, 512
AluBI	AGCT	4 cut(s)	121, 391, 418, 454
AluI	AGCT	4 cut(s)	121, 391, 418, 454
Alw21I	GWGCWC	1 cut(s)	123
Aor13HI	TCCGGA	1 cut(s)	630
AoxI	GGCC	1 cut(s)	341
ApoI	RAATTY	2 cut(s)	23, 660
ArsI	GACNNNNNNTTYG	2 cut(s)	659, 691
AspLEI	GCGC	1 cut(s)	255
BanII	GRGCYC	2 cut(s)	123, 139
BarI	GAAGNNNNNNTAC	2 cut(s)	285, 317
BbsI	GAAGAC	1 cut(s)	364
Bbv12I	GWGCWC	1 cut(s)	123
BccI	CCATC	1 cut(s)	313
BciT130I	CCWGG	1 cut(s)	225
BciVI	GTATCC	1 cut(s)	161
BfaI	CTAG	1 cut(s)	272
BfoI	RGCGCY	1 cut(s)	256
BfuI	GTATCC	1 cut(s)	161
Bme1390I	CCNGG	1 cut(s)	225
BmeRI	GACNNNNNGTC	1 cut(s)	293
BmgBI	CACGTC	1 cut(s)	290
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	225
BmsI	GCATC	2 cut(s)	79, 468
BpiI	GAAGAC	1 cut(s)	364
BplI	GAGNNNNNCTC	2 cut(s)	535, 567
BsaAI	YACGTR	1 cut(s)	172
BsaJI	CCNNGG	2 cut(s)	99, 500
BsaWI	WCCGGW	1 cut(s)	630
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 245
Bse1I	ACTGG	1 cut(s)	474
Bse3DI	GCAATG	1 cut(s)	617
BseAI	TCCGGA	1 cut(s)	630
BseBI	CCWGG	1 cut(s)	225
BseDI	CCNNGG	2 cut(s)	99, 500
BseLI	CCNNNNNNNGG	2 cut(s)	164, 245
BseMI	GCAATG	1 cut(s)	617
BseMII	CTCAG	4 cut(s)	152, 270, 551, 566
BseNI	ACTGG	1 cut(s)	474
BshFI	GGCC	1 cut(s)	343
BsiHKAI	GWGCWC	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	631
BslFI	GGGAC	2 cut(s)	160, 680
BslI	CCNNNNNNNGG	2 cut(s)	164, 245
BsmFI	GGGAC	2 cut(s)	160, 680
BsmI	GAATGC	1 cut(s)	440
BsnI	GGCC	1 cut(s)	343
Bsp1286I	GDGCHC	2 cut(s)	123, 139
Bsp13I	TCCGGA	1 cut(s)	630
Bsp143I	GATC	1 cut(s)	76
BspANI	GGCC	1 cut(s)	343
BspCNI	CTCAG	4 cut(s)	151, 271, 550, 565
BspEI	TCCGGA	1 cut(s)	630
BspLI	GGNNCC	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	617
BsrI	ACTGG	1 cut(s)	474
BssECI	CCNNGG	2 cut(s)	99, 500
BssMI	GATC	1 cut(s)	76
BssNAI	GTATAC	1 cut(s)	302
BssT1I	CCWWGG	2 cut(s)	99, 500
Bst1107I	GTATAC	1 cut(s)	302
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	2 cut(s)	196, 597
Bst6I	CTCTTC	1 cut(s)	536
BstAPI	GCANNNNNTGC	1 cut(s)	67
BstBAI	YACGTR	1 cut(s)	172
BstC8I	GCNNGC	1 cut(s)	420
BstDEI	CTNAG	5 cut(s)	131, 138, 279, 537, 552
BstH2I	RGCGCY	1 cut(s)	256
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstNI	CCWGG	1 cut(s)	225
BstNSI	RCATGY	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	223
BstV2I	GAAGAC	1 cut(s)	364
BstXI	CCANNNNNNTGG	1 cut(s)	507
BstZ17I	GTATAC	1 cut(s)	302
BsuI	GTATCC	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	343
BtrI	CACGTC	1 cut(s)	290
BtsIMutI	CAGTG	1 cut(s)	467
Cac8I	GCNNGC	1 cut(s)	420
CfoI	GCGC	1 cut(s)	255
Csp6I	GTAC	2 cut(s)	216, 269
CviAII	CATG	2 cut(s)	62, 164
CviQI	GTAC	2 cut(s)	216, 269
DdeI	CTNAG	5 cut(s)	131, 138, 279, 537, 552
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
DriI	GACNNNNNGTC	1 cut(s)	293
Eam1104I	CTCTTC	1 cut(s)	536
Eam1105I	GACNNNNNGTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	536
Ecl136II	GAGCTC	1 cut(s)	121
Eco130I	CCWWGG	2 cut(s)	99, 500
Eco24I	GRGCYC	2 cut(s)	123, 139
Eco53kI	GAGCTC	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	362
EcoICRI	GAGCTC	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	223
EcoT14I	CCWWGG	2 cut(s)	99, 500
EcoT38I	GRGCYC	2 cut(s)	123, 139
ErhI	CCWWGG	2 cut(s)	99, 500
FaeI	CATG	2 cut(s)	65, 167
FaiI	YATR	7 cut(s)	63, 107, 165, 302, 320, 486, 611
FaqI	GGGAC	2 cut(s)	160, 680
FatI	CATG	2 cut(s)	61, 163
FblI	GTMKAC	2 cut(s)	286, 301
FriOI	GRGCYC	2 cut(s)	123, 139
FspBI	CTAG	1 cut(s)	272
GlaI	GCGC	1 cut(s)	254
HaeII	RGCGCY	1 cut(s)	256
HaeIII	GGCC	1 cut(s)	343
HapII	CCGG	1 cut(s)	631
HhaI	GCGC	1 cut(s)	255
Hin1II	CATG	2 cut(s)	65, 167
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HinfI	GANTC	5 cut(s)	275, 358, 489, 564, 627
HpaII	CCGG	1 cut(s)	631
Hpy166II	GTNNAC	4 cut(s)	144, 218, 287, 302
Hpy188I	TCNGA	4 cut(s)	191, 280, 351, 540
Hpy188III	TCNNGA	3 cut(s)	74, 362, 631
Hpy8I	GTNNAC	4 cut(s)	144, 218, 287, 302
HpyAV	CCTTC	2 cut(s)	333, 386
HpyCH4III	ACNGT	2 cut(s)	196, 597
HpyCH4IV	ACGT	2 cut(s)	171, 289
HpyCH4V	TGCA	8 cut(s)	21, 61, 70, 429, 440, 481, 560, 622
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpyF3I	CTNAG	5 cut(s)	131, 138, 279, 537, 552
HpySE526I	ACGT	2 cut(s)	171, 289
Hsp92II	CATG	2 cut(s)	65, 167
HspAI	GCGC	1 cut(s)	253
Kpn2I	TCCGGA	1 cut(s)	630
Kzo9I	GATC	1 cut(s)	76
LmnI	GCTCC	2 cut(s)	250, 388
LpnPI	CCDG	9 cut(s)	54, 99, 210, 237, 252, 404, 455, 539, 644
LweI	GCATC	2 cut(s)	79, 468
MaeI	CTAG	1 cut(s)	272
MaeII	ACGT	2 cut(s)	171, 289
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MboII	GAAGA	5 cut(s)	43, 125, 364, 424, 553
MhlI	GDGCHC	2 cut(s)	123, 139
MluCI	AATT	5 cut(s)	23, 184, 423, 577, 660
MlyI	GAGTC	2 cut(s)	284, 573
MmeI	TCCRAC	2 cut(s)	554, 565
MnlI	CCTC	4 cut(s)	82, 188, 327, 537
MroI	TCCGGA	1 cut(s)	630
MspI	CCGG	1 cut(s)	631
MspR9I	CCNGG	1 cut(s)	225
Mva1269I	GAATGC	1 cut(s)	440
MvaI	CCWGG	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	67
NdeII	GATC	1 cut(s)	76
NlaIII	CATG	2 cut(s)	65, 167
NlaIV	GGNNCC	1 cut(s)	156
NspI	RCATGY	1 cut(s)	65
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PctI	GAATGC	1 cut(s)	440
PfeI	GAWTC	3 cut(s)	358, 489, 627
PleI	GAGTC	2 cut(s)	283, 572
PpsI	GAGTC	2 cut(s)	283, 572
Ppu21I	YACGTR	1 cut(s)	172
Psp124BI	GAGCTC	1 cut(s)	123
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	1 cut(s)	156
RsaI	GTAC	2 cut(s)	217, 270
RsaNI	GTAC	2 cut(s)	216, 269
SacI	GAGCTC	1 cut(s)	123
Sau3AI	GATC	1 cut(s)	76
SchI	GAGTC	2 cut(s)	284, 573
ScrFI	CCNGG	1 cut(s)	225
SduI	GDGCHC	2 cut(s)	123, 139
SetI	ASST	9 cut(s)	60, 123, 174, 241, 292, 393, 420, 456, 558
SfaNI	GCATC	2 cut(s)	79, 468
Sse9I	AATT	5 cut(s)	23, 184, 423, 577, 660
SspMI	CTAG	1 cut(s)	272
SstI	GAGCTC	1 cut(s)	123
StyD4I	CCNGG	1 cut(s)	223
StyI	CCWWGG	2 cut(s)	99, 500
TaaI	ACNGT	2 cut(s)	196, 597
TaiI	ACGT	2 cut(s)	174, 292
TaqI	TCGA	2 cut(s)	180, 363
TasI	AATT	5 cut(s)	23, 184, 423, 577, 660
TatI	WGTACW	2 cut(s)	215, 268
TfiI	GAWTC	3 cut(s)	358, 489, 627
TscAI	CASTG	1 cut(s)	474
TspDTI	ATGAA	2 cut(s)	193, 420
TspRI	CASTG	1 cut(s)	474
XapI	RAATTY	2 cut(s)	23, 660
XceI	RCATGY	1 cut(s)	65
XmiI	GTMKAC	2 cut(s)	286, 301
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.