Rh1DG212400

Basic leucine zipper and W2 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001412
Physical Location & Seq
Forward (+)
41340518 .. 41354967
14450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG212400.1

Sequence Viewer

Length: 972 bp
ATGGGTTGTGTGAAGGTGGAGAACTACTGGATAAAATTTTGTCCAGGGGTGGAAGATACACAGAAGAAGATGCTAAAGTTATTGTTGTGCAAATTTGAAGTGTTATTGCCTGTTGTCATCTTCAAGGTGCATGTTGTGCATCGTGATCTAAAGCCAGAGGCTCTTTCCAAGGCTATGACAGAAGATGAGCTCTACTATCTTAGGGCTCAGTTTACGCTCTTGGAATCCAAACATGGATATGTGTCCCTCGATAATTTCAGAACGGTTGTTTTCACTGGGGGCAGTACACAACCAGGAACAACAAAACCTGATAAGGGGGAGCGCCACCCTTACTCTGTACTAGAGTCTGAGCGTAGACGTGAAGTCAGTATACCATCTGTTATCTACATACAAAAGATTTTGAGGCGAAGGCCATTTCTGATAAAGAATCTCGAAAATATCTTCCTTCAGTCATTGGAGCTTTTTGTGGAAAATGAAAGGAAGAAGCTGGCAATTTGCACAGCACTTGCATTCTCTCAAAAGCTATCAGGACTTACACTGGAAACGGTGTTCCAGCCAATGCTCATATTGGAAAAAGTTGTCGTAGCTGATAAGCCGAACCTTCACACTCTCCAACAATCTAGCTACCCCCACCGGCTTCTCGCTCTCTGCAAATCAAACACGATGAGCTCCTGGGACAGCTCCTGGGACAACTGGGTCGAACACTCCCTTGACAAACTTGAACGCCTGCAACTCCTCCGATCTCTCCGACCCATCTACCTCTGCAATGAACCTCAAAAACCCACCACCACCGTCGAAGACGACGACCTCCAAGTCTTCCACCAAATGCAGCTCTGGGACCGATCCTCCGTGGAGGTCCACATTCCCGAATCAACGTTCCAGAAATGGCTCAGTGACATCCCCAGCTCCGATATGCTGGGAAGAATATGTTTGCCACTCGGAAGATCTAGCAACAAGGTTGCAAAGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
W2

Protein Analysis

323

Amino Acids

37.39

Weight (kDa)

8.72

Isoelectric Point (pI)

48.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HEAT_5MP1_2 PF25504 84 - 187 3.2e-19 5MP1/2 HEAT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 695, 812
AccI GTMKAC 2 cut(s) 355, 370
AclI AACGTT 1 cut(s) 875
AclWI GGATC 1 cut(s) 837
AcsI RAATTY 2 cut(s) 35, 92
AcuI CTGAAG 1 cut(s) 431
AfaI GTAC 2 cut(s) 286, 339
AfiI CCNNNNNNNGG 1 cut(s) 314
AgsI TTSAA 3 cut(s) 98, 124, 722
AhdI GACNNNNNGTC 1 cut(s) 362
AjiI CACGTC 1 cut(s) 359
AjnI CCWGG 4 cut(s) 43, 292, 671, 683
AloI GAACNNNNNNTCC 2 cut(s) 533, 565
Alw21I GWGCWC 2 cut(s) 192, 671
AlwI GGATC 1 cut(s) 837
AlwNI CAGNNNCTG 1 cut(s) 684
AoxI GGCC 1 cut(s) 410
ApeKI GCWGC 1 cut(s) 829
ApoI RAATTY 2 cut(s) 35, 92
AspLEI GCGC 1 cut(s) 324
AspS9I GGNCC 2 cut(s) 838, 856
AvaII GGWCC 2 cut(s) 838, 856
BanII GRGCYC 3 cut(s) 192, 208, 671
BarI GAAGNNNNNNTAC 2 cut(s) 354, 386
BbsI GAAGAC 2 cut(s) 804, 808
Bbv12I GWGCWC 2 cut(s) 192, 671
BbvI GCAGC 1 cut(s) 841
BccI CCATC 2 cut(s) 382, 761
BciT130I CCWGG 4 cut(s) 45, 294, 673, 685
BfaI CTAG 3 cut(s) 341, 621, 948
BfoI RGCGCY 1 cut(s) 325
BglII AGATCT 1 cut(s) 944
BisI GCNGC 1 cut(s) 830
BlsI GCNGC 1 cut(s) 831
Bme1390I CCNGG 4 cut(s) 45, 294, 673, 685
Bme18I GGWCC 2 cut(s) 838, 856
BmeRI GACNNNNNGTC 1 cut(s) 362
BmgBI CACGTC 1 cut(s) 359
BmgT120I GGNCC 2 cut(s) 838, 856
BmiI GGNNCC 1 cut(s) 839
BmrFI CCNGG 4 cut(s) 45, 294, 673, 685
BmrI ACTGGG 2 cut(s) 285, 703
BmsI GCATC 2 cut(s) 60, 148
BmuI ACTGGG 2 cut(s) 285, 703
BpiI GAAGAC 2 cut(s) 804, 808
BsaJI CCNNGG 5 cut(s) 44, 168, 672, 684, 849
BsaXI ACNNNNNCTCC 2 cut(s) 830, 860
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse118I RCCGGY 1 cut(s) 633
Bse1I ACTGG 4 cut(s) 32, 280, 543, 698
Bse3DI GCAATG 1 cut(s) 772
BseBI CCWGG 4 cut(s) 45, 294, 673, 685
BseDI CCNNGG 5 cut(s) 44, 168, 672, 684, 849
BseGI GGATG 1 cut(s) 897
BseLI CCNNNNNNNGG 1 cut(s) 314
BseMI GCAATG 1 cut(s) 772
BseMII CTCAG 3 cut(s) 221, 339, 904
BseNI ACTGG 4 cut(s) 32, 280, 543, 698
BseRI GAGGAG 1 cut(s) 725
BseXI GCAGC 1 cut(s) 841
BseYI CCCAGC 2 cut(s) 902, 916
BshFI GGCC 1 cut(s) 412
BsiHKAI GWGCWC 2 cut(s) 192, 671
BsiSI CCGG 1 cut(s) 634
BslFI GGGAC 4 cut(s) 229, 689, 701, 851
BslI CCNNNNNNNGG 1 cut(s) 314
BsmFI GGGAC 4 cut(s) 229, 689, 701, 851
BsmI GAATGC 1 cut(s) 509
BsnI GGCC 1 cut(s) 412
Bsp1286I GDGCHC 3 cut(s) 192, 208, 671
Bsp143I GATC 4 cut(s) 145, 740, 842, 944
BspANI GGCC 1 cut(s) 412
BspCNI CTCAG 3 cut(s) 220, 340, 903
BspLI GGNNCC 1 cut(s) 839
BspPI GGATC 1 cut(s) 837
BsrDI GCAATG 1 cut(s) 772
BsrFI RCCGGY 1 cut(s) 633
BsrI ACTGG 4 cut(s) 32, 280, 543, 698
BssAI RCCGGY 1 cut(s) 633
BssECI CCNNGG 5 cut(s) 44, 168, 672, 684, 849
BssMI GATC 4 cut(s) 145, 740, 842, 944
BssNAI GTATAC 1 cut(s) 371
BssT1I CCWWGG 1 cut(s) 168
Bst1107I GTATAC 1 cut(s) 371
Bst2UI CCWGG 4 cut(s) 45, 294, 673, 685
Bst4CI ACNGT 3 cut(s) 265, 547, 793
BstAPI GCANNNNNTGC 1 cut(s) 136
BstC8I GCNNGC 2 cut(s) 489, 728
BstDEI CTNAG 4 cut(s) 200, 207, 348, 890
BstDSI CCRYGG 1 cut(s) 849
BstF5I GGATG 1 cut(s) 897
BstH2I RGCGCY 1 cut(s) 325
BstHHI GCGC 1 cut(s) 324
BstKTI GATC 4 cut(s) 148, 743, 845, 947
BstMBI GATC 4 cut(s) 145, 740, 842, 944
BstMWI GCNNNNNNNGC 1 cut(s) 136
BstNI CCWGG 4 cut(s) 45, 294, 673, 685
BstNSI RCATGY 1 cut(s) 134
BstSCI CCNGG 4 cut(s) 43, 292, 671, 683
BstV1I GCAGC 1 cut(s) 841
BstV2I GAAGAC 2 cut(s) 804, 808
BstX2I RGATCY 1 cut(s) 944
BstYI RGATCY 1 cut(s) 944
BstZ17I GTATAC 1 cut(s) 371
BsuRI GGCC 1 cut(s) 412
BtgI CCRYGG 1 cut(s) 849
BtrI CACGTC 1 cut(s) 359
BtsCI GGATG 1 cut(s) 897
BtsIMutI CAGTG 3 cut(s) 273, 536, 898
Cac8I GCNNGC 2 cut(s) 489, 728
CaiI CAGNNNCTG 1 cut(s) 684
CfoI GCGC 1 cut(s) 324
Cfr10I RCCGGY 1 cut(s) 633
Cfr13I GGNCC 2 cut(s) 838, 856
Csp6I GTAC 2 cut(s) 285, 338
CviAII CATG 2 cut(s) 131, 233
CviQI GTAC 2 cut(s) 285, 338
DdeI CTNAG 4 cut(s) 200, 207, 348, 890
DpnI GATC 4 cut(s) 147, 742, 844, 946
DpnII GATC 4 cut(s) 145, 740, 842, 944
DrdI GACNNNNNNGTC 2 cut(s) 695, 812
DriI GACNNNNNGTC 1 cut(s) 362
DseDI GACNNNNNNGTC 2 cut(s) 695, 812
Eam1105I GACNNNNNGTC 1 cut(s) 362
Ecl136II GAGCTC 2 cut(s) 190, 669
Eco130I CCWWGG 1 cut(s) 168
Eco24I GRGCYC 3 cut(s) 192, 208, 671
Eco47I GGWCC 2 cut(s) 838, 856
Eco53kI GAGCTC 2 cut(s) 190, 669
Eco57I CTGAAG 1 cut(s) 431
EcoICRI GAGCTC 2 cut(s) 190, 669
EcoRII CCWGG 4 cut(s) 43, 292, 671, 683
EcoT14I CCWWGG 1 cut(s) 168
EcoT38I GRGCYC 3 cut(s) 192, 208, 671
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 2 cut(s) 134, 236
FaiI YATR 9 cut(s) 132, 176, 234, 240, 371, 389, 566, 914, 928
FaqI GGGAC 4 cut(s) 229, 689, 701, 851
FatI CATG 2 cut(s) 130, 232
FblI GTMKAC 2 cut(s) 355, 370
Fnu4HI GCNGC 1 cut(s) 830
FokI GGATG 1 cut(s) 884
FriOI GRGCYC 3 cut(s) 192, 208, 671
Fsp4HI GCNGC 1 cut(s) 830
FspBI CTAG 3 cut(s) 341, 621, 948
GlaI GCGC 1 cut(s) 323
GluI GCNGC 1 cut(s) 830
GsaI CCCAGC 2 cut(s) 906, 920
HaeII RGCGCY 1 cut(s) 325
HaeIII GGCC 1 cut(s) 412
HapII CCGG 1 cut(s) 634
HhaI GCGC 1 cut(s) 324
Hin1II CATG 2 cut(s) 134, 236
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HinfI GANTC 4 cut(s) 224, 344, 427, 869
HpaII CCGG 1 cut(s) 634
Hpy166II GTNNAC 5 cut(s) 213, 287, 356, 371, 859
Hpy188I TCNGA 7 cut(s) 260, 349, 420, 740, 749, 910, 941
Hpy188III TCNNGA 5 cut(s) 143, 431, 528, 866, 880
Hpy8I GTNNAC 5 cut(s) 213, 287, 356, 371, 859
Hpy99I CGWCG 2 cut(s) 797, 806
HpyAV CCTTC 4 cut(s) 7, 402, 455, 611
HpyCH4III ACNGT 3 cut(s) 265, 547, 793
HpyCH4IV ACGT 2 cut(s) 358, 875
HpyF10VI GCNNNNNNNGC 1 cut(s) 136
HpyF3I CTNAG 4 cut(s) 200, 207, 348, 890
HpySE526I ACGT 2 cut(s) 358, 875
Hsp92II CATG 2 cut(s) 134, 236
HspAI GCGC 1 cut(s) 322
Kzo9I GATC 4 cut(s) 145, 740, 842, 944
LmnI GCTCC 5 cut(s) 319, 457, 674, 686, 911
Lsp1109I GCAGC 1 cut(s) 841
LweI GCATC 2 cut(s) 60, 148
MaeI CTAG 3 cut(s) 341, 621, 948
MaeII ACGT 2 cut(s) 358, 875
MaeIII GTNAC 1 cut(s) 893
MalI GATC 4 cut(s) 147, 742, 844, 946
MboI GATC 4 cut(s) 145, 740, 842, 944
MflI RGATCY 1 cut(s) 944
MhlI GDGCHC 3 cut(s) 192, 208, 671
MluCI AATT 4 cut(s) 35, 92, 253, 492
MlyI GAGTC 1 cut(s) 353
MmeI TCCRAC 2 cut(s) 637, 772
MnlI CCTC 9 cut(s) 151, 257, 396, 746, 770, 783, 818, 847, 856
MslI CAYNNNNRTG 1 cut(s) 237
MspI CCGG 1 cut(s) 634
MspR9I CCNGG 4 cut(s) 45, 294, 673, 685
Mva1269I GAATGC 1 cut(s) 509
MvaI CCWGG 4 cut(s) 45, 294, 673, 685
MwoI GCNNNNNNNGC 1 cut(s) 136
NdeII GATC 4 cut(s) 145, 740, 842, 944
NlaIII CATG 2 cut(s) 134, 236
NlaIV GGNNCC 1 cut(s) 839
NmuCI GTSAC 1 cut(s) 893
NspI RCATGY 1 cut(s) 134
PcsI WCGNNNNNNNCGW 1 cut(s) 801
PctI GAATGC 1 cut(s) 509
PfeI GAWTC 3 cut(s) 224, 427, 869
PkrI GCNGC 1 cut(s) 831
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
Psp124BI GAGCTC 2 cut(s) 192, 671
Psp1406I AACGTT 1 cut(s) 875
Psp6I CCWGG 4 cut(s) 43, 292, 671, 683
PspFI CCCAGC 2 cut(s) 902, 916
PspGI CCWGG 4 cut(s) 43, 292, 671, 683
PspN4I GGNNCC 1 cut(s) 839
PspPI GGNCC 2 cut(s) 838, 856
PstNI CAGNNNCTG 1 cut(s) 684
PsuI RGATCY 1 cut(s) 944
RsaI GTAC 2 cut(s) 286, 339
RsaNI GTAC 2 cut(s) 285, 338
RseI CAYNNNNRTG 1 cut(s) 237
SacI GAGCTC 2 cut(s) 192, 671
SatI GCNGC 1 cut(s) 830
Sau3AI GATC 4 cut(s) 145, 740, 842, 944
Sau96I GGNCC 2 cut(s) 838, 856
SchI GAGTC 1 cut(s) 353
ScrFI CCNGG 4 cut(s) 45, 294, 673, 685
SduI GDGCHC 3 cut(s) 192, 208, 671
SfaNI GCATC 2 cut(s) 60, 148
SinI GGWCC 2 cut(s) 838, 856
SmiMI CAYNNNNRTG 1 cut(s) 237
Sse9I AATT 4 cut(s) 35, 92, 253, 492
SspMI CTAG 3 cut(s) 341, 621, 948
SstI GAGCTC 2 cut(s) 192, 671
StyD4I CCNGG 4 cut(s) 43, 292, 671, 683
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 3 cut(s) 265, 547, 793
TaiI ACGT 2 cut(s) 361, 878
TaqI TCGA 4 cut(s) 249, 432, 699, 795
TaqII GACCGA 1 cut(s) 855
TasI AATT 4 cut(s) 35, 92, 253, 492
TatI WGTACW 2 cut(s) 284, 337
TfiI GAWTC 3 cut(s) 224, 427, 869
TscAI CASTG 3 cut(s) 280, 543, 898
TseFI GTSAC 1 cut(s) 893
TseI GCWGC 1 cut(s) 829
Tsp45I GTSAC 1 cut(s) 893
TspDTI ATGAA 2 cut(s) 489, 783
TspGWI ACGGA 1 cut(s) 838
TspRI CASTG 3 cut(s) 280, 543, 898
VpaK11BI GGWCC 2 cut(s) 838, 856
XapI RAATTY 2 cut(s) 35, 92
XceI RCATGY 1 cut(s) 134
XmiI GTMKAC 2 cut(s) 355, 370
XspI CTAG 3 cut(s) 341, 621, 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.