Rh7CG451800

Basic leucine zipper and W2 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001412
Physical Location & Seq
Reverse (-)
59371037 .. 59376546
5510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG451800.1

Sequence Viewer

Length: 660 bp
ATGAGGGTTATTGATTTTGGTCTCTCTGATTTTATAAGGCCTGCCCACCCATGGCTAAGGGATGAAAGACAAGCTGTGCCTTTAGATTTAGTAATCCACAAGTTGGTTAAGTCATATGTTCGTGCCACACCTTTCAGGCGTGCAGCAATGAAGGCTCTTTCCAAGGCTATGACAGAAGATGAGCTCTACTATCTTAGGGCTCAGTTTACGCTCTTGGAACCCAAACATGGATACGTGTCCCTCGATAATTTCAGAACGGTTGTTTTCACTGGGGGCAGTACACAACCAGGAACAACAAAACCTGATAAGGGGGAGCGCCACCCTTACTCTGTACTAGAGTCTGAGCGTAGACGTGAAGTCAGTATACCATCTGTTATCTACATACAAAAGATTTTGAGGCGAAGGCCATTTCTGATAAAGAATCTCGAAAATGTCTTCCTTCAGTCATTGGAGCTTTTTGTGGAAAATGAAAGGAAGAAGCTGGCAATTTGCACAGCACTTGCATTCTCTCAAAAGCTATTAGGACTTACACTGGAAACGGTGTTCCAGCCAATGCTCATATTGGAAAAAGTTGGCGGTGCTACTGACAGAGAAGGCGACGATGATGATGGGTTTGACTTTAGGATAAGTTATCTAATTAGACTAGGTAGGCATTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
W2

Protein Analysis

219

Amino Acids

25.27

Weight (kDa)

9.43

Isoelectric Point (pI)

41.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HEAT_5MP1_2 PF25504 81 - 184 9.9e-20 5MP1/2 HEAT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 35
AccB7I CCANNNNNTGG 1 cut(s) 103
AccI GTMKAC 2 cut(s) 349, 364
AciI CCGC 1 cut(s) 576
AcuI CTGAAG 1 cut(s) 425
AfaI GTAC 2 cut(s) 280, 333
AfiI CCNNNNNNNGG 4 cut(s) 51, 103, 227, 308
AflIII ACRYGT 1 cut(s) 234
AhdI GACNNNNNGTC 1 cut(s) 356
AjiI CACGTC 1 cut(s) 353
AjnI CCWGG 1 cut(s) 286
AloI GAACNNNNNNTCC 2 cut(s) 527, 559
AluBI AGCT 5 cut(s) 74, 184, 454, 481, 517
AluI AGCT 5 cut(s) 74, 184, 454, 481, 517
Alw21I GWGCWC 1 cut(s) 186
Alw26I GTCTC 1 cut(s) 26
AoxI GGCC 2 cut(s) 38, 404
ApeKI GCWGC 1 cut(s) 143
AspLEI GCGC 1 cut(s) 318
BanII GRGCYC 2 cut(s) 186, 202
BarI GAAGNNNNNNTAC 2 cut(s) 348, 380
BbsI GAAGAC 1 cut(s) 427
Bbv12I GWGCWC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 155
BccI CCATC 2 cut(s) 376, 602
BciT130I CCWGG 1 cut(s) 288
BciVI GTATCC 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 26
BfaI CTAG 2 cut(s) 335, 644
BfoI RGCGCY 1 cut(s) 319
BfuI GTATCC 1 cut(s) 224
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
Bme1390I CCNGG 1 cut(s) 288
BmeRI GACNNNNNGTC 1 cut(s) 356
BmgBI CACGTC 1 cut(s) 353
BmiI GGNNCC 1 cut(s) 219
BmrFI CCNGG 1 cut(s) 288
BmrI ACTGGG 1 cut(s) 279
BmuI ACTGGG 1 cut(s) 279
BpiI GAAGAC 1 cut(s) 427
Bpu10I CCTNAGC 1 cut(s) 56
BsaAI YACGTR 1 cut(s) 235
BsaI GGTCTC 1 cut(s) 26
BsaJI CCNNGG 2 cut(s) 50, 162
Bsc4I CCNNNNNNNGG 4 cut(s) 51, 103, 227, 308
Bse1I ACTGG 2 cut(s) 274, 537
Bse3DI GCAATG 1 cut(s) 153
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 2 cut(s) 50, 162
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 4 cut(s) 51, 103, 227, 308
BseMI GCAATG 1 cut(s) 153
BseMII CTCAG 2 cut(s) 215, 333
BseNI ACTGG 2 cut(s) 274, 537
BseXI GCAGC 1 cut(s) 155
BsgI GTGCAG 1 cut(s) 162
BshFI GGCC 2 cut(s) 40, 406
BsiHKAI GWGCWC 1 cut(s) 186
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 4 cut(s) 51, 103, 227, 308
BsmAI GTCTC 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 223
BsmI GAATGC 2 cut(s) 503, 652
BsnI GGCC 2 cut(s) 40, 406
Bso31I GGTCTC 1 cut(s) 26
Bsp1286I GDGCHC 2 cut(s) 186, 202
Bsp19I CCATGG 1 cut(s) 50
BspACI CCGC 1 cut(s) 576
BspANI GGCC 2 cut(s) 40, 406
BspCNI CTCAG 2 cut(s) 214, 334
BspLI GGNNCC 1 cut(s) 219
BspTNI GGTCTC 1 cut(s) 26
BsrDI GCAATG 1 cut(s) 153
BsrI ACTGG 2 cut(s) 274, 537
BssECI CCNNGG 2 cut(s) 50, 162
BssNAI GTATAC 1 cut(s) 365
BssT1I CCWWGG 2 cut(s) 50, 162
Bst1107I GTATAC 1 cut(s) 365
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 2 cut(s) 259, 541
BstBAI YACGTR 1 cut(s) 235
BstC8I GCNNGC 3 cut(s) 42, 141, 483
BstDEI CTNAG 4 cut(s) 56, 194, 201, 342
BstDSI CCRYGG 1 cut(s) 50
BstF5I GGATG 1 cut(s) 67
BstH2I RGCGCY 1 cut(s) 319
BstHHI GCGC 1 cut(s) 318
BstMAI GTCTC 1 cut(s) 26
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNI CCWGG 1 cut(s) 288
BstSCI CCNGG 1 cut(s) 286
BstV1I GCAGC 1 cut(s) 155
BstV2I GAAGAC 1 cut(s) 427
BstZ17I GTATAC 1 cut(s) 365
BsuI GTATCC 1 cut(s) 224
BsuRI GGCC 2 cut(s) 40, 406
BtgI CCRYGG 1 cut(s) 50
BtrI CACGTC 1 cut(s) 353
BtsCI GGATG 1 cut(s) 67
BtsIMutI CAGTG 2 cut(s) 267, 530
Cac8I GCNNGC 3 cut(s) 42, 141, 483
CfoI GCGC 1 cut(s) 318
Csp6I GTAC 2 cut(s) 279, 332
CviAII CATG 2 cut(s) 51, 227
CviQI GTAC 2 cut(s) 279, 332
DdeI CTNAG 4 cut(s) 56, 194, 201, 342
DriI GACNNNNNGTC 1 cut(s) 356
Eam1105I GACNNNNNGTC 1 cut(s) 356
Ecl136II GAGCTC 1 cut(s) 184
Eco130I CCWWGG 2 cut(s) 50, 162
Eco147I AGGCCT 1 cut(s) 40
Eco24I GRGCYC 2 cut(s) 186, 202
Eco31I GGTCTC 1 cut(s) 26
Eco53kI GAGCTC 1 cut(s) 184
Eco57I CTGAAG 1 cut(s) 425
EcoICRI GAGCTC 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 286
EcoT14I CCWWGG 2 cut(s) 50, 162
EcoT38I GRGCYC 2 cut(s) 186, 202
ErhI CCWWGG 2 cut(s) 50, 162
FaeI CATG 2 cut(s) 54, 230
FaiI YATR 9 cut(s) 35, 52, 115, 117, 170, 228, 365, 383, 560
FaqI GGGAC 1 cut(s) 223
FatI CATG 2 cut(s) 50, 226
FauNDI CATATG 1 cut(s) 115
FblI GTMKAC 2 cut(s) 349, 364
Fnu4HI GCNGC 1 cut(s) 144
FokI GGATG 1 cut(s) 74
FriOI GRGCYC 2 cut(s) 186, 202
Fsp4HI GCNGC 1 cut(s) 144
FspBI CTAG 2 cut(s) 335, 644
GlaI GCGC 1 cut(s) 317
GluI GCNGC 1 cut(s) 144
HaeII RGCGCY 1 cut(s) 319
HaeIII GGCC 2 cut(s) 40, 406
HhaI GCGC 1 cut(s) 318
Hin1II CATG 2 cut(s) 54, 230
Hin6I GCGC 1 cut(s) 316
HinP1I GCGC 1 cut(s) 316
HinfI GANTC 2 cut(s) 338, 421
Hpy166II GTNNAC 4 cut(s) 207, 281, 350, 365
Hpy188I TCNGA 4 cut(s) 28, 254, 343, 414
Hpy188III TCNNGA 1 cut(s) 425
Hpy8I GTNNAC 4 cut(s) 207, 281, 350, 365
Hpy99I CGWCG 1 cut(s) 602
HpyAV CCTTC 4 cut(s) 145, 396, 449, 587
HpyCH4III ACNGT 2 cut(s) 259, 541
HpyCH4IV ACGT 2 cut(s) 234, 352
HpyCH4V TGCA 3 cut(s) 143, 492, 503
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 4 cut(s) 56, 194, 201, 342
HpySE526I ACGT 2 cut(s) 234, 352
Hsp92II CATG 2 cut(s) 54, 230
HspAI GCGC 1 cut(s) 316
LmnI GCTCC 2 cut(s) 313, 451
LpnPI CCDG 9 cut(s) 54, 121, 255, 273, 300, 315, 467, 518, 560
Lsp1109I GCAGC 1 cut(s) 155
MaeI CTAG 2 cut(s) 335, 644
MaeII ACGT 2 cut(s) 234, 352
MboII GAAGA 3 cut(s) 188, 427, 487
MhlI GDGCHC 2 cut(s) 186, 202
MluCI AATT 3 cut(s) 247, 486, 636
MlyI GAGTC 1 cut(s) 347
MnlI CCTC 2 cut(s) 251, 390
MseI TTAA 1 cut(s) 108
MspR9I CCNGG 1 cut(s) 288
Mva1269I GAATGC 2 cut(s) 503, 652
MvaI CCWGG 1 cut(s) 288
MwoI GCNNNNNNNGC 1 cut(s) 152
NcoI CCATGG 1 cut(s) 50
NdeI CATATG 1 cut(s) 115
NlaIII CATG 2 cut(s) 54, 230
NlaIV GGNNCC 1 cut(s) 219
PceI AGGCCT 1 cut(s) 40
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PctI GAATGC 2 cut(s) 503, 652
PfeI GAWTC 1 cut(s) 421
PflMI CCANNNNNTGG 1 cut(s) 103
PkrI GCNGC 1 cut(s) 145
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
Ppu21I YACGTR 1 cut(s) 235
PsiI TTATAA 1 cut(s) 35
Psp124BI GAGCTC 1 cut(s) 186
Psp6I CCWGG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 286
PspN4I GGNNCC 1 cut(s) 219
RsaI GTAC 2 cut(s) 280, 333
RsaNI GTAC 2 cut(s) 279, 332
SacI GAGCTC 1 cut(s) 186
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 1 cut(s) 144
SchI GAGTC 1 cut(s) 347
ScrFI CCNGG 1 cut(s) 288
SduI GDGCHC 2 cut(s) 186, 202
Sse9I AATT 3 cut(s) 247, 486, 636
SseBI AGGCCT 1 cut(s) 40
SsiI CCGC 1 cut(s) 576
SspMI CTAG 2 cut(s) 335, 644
SstI GAGCTC 1 cut(s) 186
StuI AGGCCT 1 cut(s) 40
StyD4I CCNGG 1 cut(s) 286
StyI CCWWGG 2 cut(s) 50, 162
TaaI ACNGT 2 cut(s) 259, 541
TaiI ACGT 2 cut(s) 237, 355
TaqI TCGA 2 cut(s) 243, 426
TasI AATT 3 cut(s) 247, 486, 636
TatI WGTACW 2 cut(s) 278, 331
TfiI GAWTC 1 cut(s) 421
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 2 cut(s) 274, 537
TseI GCWGC 1 cut(s) 143
TspDTI ATGAA 3 cut(s) 78, 164, 483
TspRI CASTG 2 cut(s) 274, 537
Van91I CCANNNNNTGG 1 cut(s) 103
XmiI GTMKAC 2 cut(s) 349, 364
XspI CTAG 2 cut(s) 335, 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.