Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000110.1

Orthogroup ID

OG0001412

Physical Location & Seq

Genomic Coordinates Reverse (-)

255332 .. 256604

Gene Structure 1273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000110.1_g000053.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atgtatgagccaccttttggggcaatgtctgtggctcagtttacactcttggaacccaaacatggatacgtgtccctcgataatttcagaacggctctcatgaaaaattcaactgatgccatgaaggagtcgagggttcatgacatcataaatgtgatggagccactcgcgcacaagaaattggactttgaagagttctgcgttgccgcaataagtacatatcagctagaagctcttgaagggtgggagaagattgcaagtacagcttttgagtgttttgaaagggaaggaaaccgggtcatctctgttgaggagttggcacaggaaatgaatctgggtcctacatcttactctctactcagagactggatcagaacctccgaccgaaaacttagcttccttggatacaccaaatttttgcatggtgtgacaatacgtacttccaataccagacaccgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

153

Amino Acids

17.6

Weight (kDa)

5.96

Isoelectric Point (pI)

25.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49370 AT5G24430
fragaria_vesca	FvH4_7g32610 FvH4_7g32610
malus_domestica	MD01G1227200.v1.1 MD07G1297500.v1.1
prunus_persica	Prupe.2G317200_v2.0.a1 Prupe.2G317200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0382501 RchiOBHm_Chr2g0138551 RchiOBHm_Chr2g0138561 RchiOBHm_Chr2g0161821 RchiOBHm_Chr6g0303421
rosa_laevigata	RLG00000007574 RLG00000010752 RLG00000023924 RLG00000026171 RLG00000031079 RLG00000034979 RLG00000035703 RLG00000036307
rosa_multiflora	Rmu_sc0000110.1_g000053 Rmu_sc0000110.1_g000055 Rmu_sc0003696.1_g000002 Rmu_sc0029402.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111900 Rroxscaffold_4G00278000 Rroxscaffold_7G00202700
rosa_rugosa	Rorug01G0435000
rosa_samantha	Rh1AG262900 Rh1AG460000 Rh1BG182300 Rh1BG416200 Rh1CG430000 Rh1DG212400 Rh1DG448600 Rh2AG553600 Rh2BG637900 Rh4AG140900 Rh4CG147700 Rh4CG147800 Rh5CG368300 Rh5CG374200 Rh6AG435500 Rh6CG169600 Rh6CG190900 Rh6DG161600 Rh7BG358800 Rh7CG197800 Rh7CG451800
rosa_wichuraiana	Rw1G001490 Rw1G041160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	17
AccII	CGCG	1 cut(s)	170
AciI	CCGC	1 cut(s)	207
AclWI	GGATC	1 cut(s)	377
AcsI	RAATTY	2 cut(s)	106, 413
AfaI	GTAC	3 cut(s)	217, 262, 439
AfiI	CCNNNNNNNGG	2 cut(s)	17, 62
AflIII	ACRYGT	1 cut(s)	69
AgsI	TTSAA	4 cut(s)	111, 191, 239, 281
AluBI	AGCT	4 cut(s)	226, 233, 266, 396
AluI	AGCT	4 cut(s)	226, 233, 266, 396
Alw26I	GTCTC	1 cut(s)	357
AlwI	GGATC	1 cut(s)	377
AlwNI	CAGNNNCTG	1 cut(s)	366
ApoI	RAATTY	2 cut(s)	106, 413
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	1 cut(s)	338
AsuC2I	CCSGG	1 cut(s)	296
AvaII	GGWCC	1 cut(s)	338
BccI	CCATC	1 cut(s)	151
BceAI	ACGGC	1 cut(s)	108
BciVI	GTATCC	2 cut(s)	59, 398
BcnI	CCSGG	1 cut(s)	296
BcoDI	GTCTC	1 cut(s)	357
BfaI	CTAG	1 cut(s)	227
BfuI	GTATCC	2 cut(s)	59, 398
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	1 cut(s)	296
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	1 cut(s)	338
BmiI	GGNNCC	3 cut(s)	54, 162, 339
BmrFI	CCNGG	1 cut(s)	296
BmsI	GCATC	1 cut(s)	106
BpuMI	CCSGG	1 cut(s)	296
BsaAI	YACGTR	2 cut(s)	70, 437
BsaJI	CCNNGG	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 62
Bse1I	ACTGG	1 cut(s)	371
Bse3DI	GCAATG	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	400
BseLI	CCNNNNNNNGG	2 cut(s)	17, 62
BseMI	GCAATG	1 cut(s)	30
BseMII	CTCAG	2 cut(s)	50, 373
BseNI	ACTGG	1 cut(s)	371
BseRI	GAGGAG	1 cut(s)	326
Bsh1236I	CGCG	1 cut(s)	170
Bsh1285I	CGRYCG	1 cut(s)	385
BsiEI	CGRYCG	1 cut(s)	385
BsiSI	CCGG	1 cut(s)	295
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	2 cut(s)	17, 62
BsmAI	GTCTC	1 cut(s)	357
BsmFI	GGGAC	1 cut(s)	58
Bsp143I	GATC	1 cut(s)	369
BspACI	CCGC	1 cut(s)	207
BspCNI	CTCAG	2 cut(s)	49, 372
BspFNI	CGCG	1 cut(s)	170
BspHI	TCATGA	2 cut(s)	99, 139
BspLI	GGNNCC	3 cut(s)	54, 162, 339
BspPI	GGATC	1 cut(s)	377
BsrDI	GCAATG	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	371
BssECI	CCNNGG	1 cut(s)	400
BssMI	GATC	1 cut(s)	369
BssT1I	CCWWGG	1 cut(s)	400
Bst6I	CTCTTC	1 cut(s)	186
BstBAI	YACGTR	2 cut(s)	70, 437
BstDEI	CTNAG	3 cut(s)	36, 359, 392
BstFNI	CGCG	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	1 cut(s)	372
BstMAI	GTCTC	1 cut(s)	357
BstMBI	GATC	1 cut(s)	369
BstMCI	CGRYCG	1 cut(s)	385
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 263
BstSCI	CCNGG	1 cut(s)	294
BstSNI	TACGTA	1 cut(s)	437
BstUI	CGCG	1 cut(s)	170
BsuI	GTATCC	2 cut(s)	59, 398
CaiI	CAGNNNCTG	1 cut(s)	366
CciI	TCATGA	2 cut(s)	99, 139
CfoI	GCGC	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	338
Csp6I	GTAC	3 cut(s)	216, 261, 438
CspCI	CAANNNNNGTGG	2 cut(s)	12, 47
CviAII	CATG	5 cut(s)	62, 100, 121, 140, 422
CviJI	RGCY	8 cut(s)	10, 35, 95, 163, 226, 233, 266, 396
CviKI_1	RGCY	8 cut(s)	10, 35, 95, 163, 226, 233, 266, 396
CviQI	GTAC	3 cut(s)	216, 261, 438
DdeI	CTNAG	3 cut(s)	36, 359, 392
DpnI	GATC	1 cut(s)	371
DpnII	GATC	1 cut(s)	369
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Eco105I	TACGTA	1 cut(s)	437
Eco130I	CCWWGG	1 cut(s)	400
Eco47I	GGWCC	1 cut(s)	338
EcoO109I	RGGNCCY	1 cut(s)	338
EcoT14I	CCWWGG	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	400
FaeI	CATG	5 cut(s)	65, 103, 124, 143, 425
FaiI	YATR	8 cut(s)	6, 63, 101, 122, 141, 149, 220, 423
FalI	AAGNNNNNCTT	2 cut(s)	250, 282
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	5 cut(s)	61, 99, 120, 139, 421
Fnu4HI	GCNGC	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	1 cut(s)	227
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	1 cut(s)	207
HapII	CCGG	1 cut(s)	295
HhaI	GCGC	1 cut(s)	172
Hin1II	CATG	5 cut(s)	65, 103, 124, 143, 425
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HinfI	GANTC	2 cut(s)	128, 331
HpaII	CCGG	1 cut(s)	295
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188I	TCNGA	4 cut(s)	89, 362, 374, 382
Hpy188III	TCNNGA	3 cut(s)	100, 140, 236
Hpy8I	GTNNAC	1 cut(s)	42
HpyAV	CCTTC	3 cut(s)	118, 233, 281
HpyCH4IV	ACGT	2 cut(s)	69, 436
HpyCH4V	TGCA	2 cut(s)	257, 421
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 263
HpyF3I	CTNAG	3 cut(s)	36, 359, 392
HpySE526I	ACGT	2 cut(s)	69, 436
Hsp92II	CATG	5 cut(s)	65, 103, 124, 143, 425
HspAI	GCGC	1 cut(s)	170
Kzo9I	GATC	1 cut(s)	369
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	4 cut(s)	308, 308, 320, 352
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	1 cut(s)	227
MaeII	ACGT	2 cut(s)	69, 436
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	1 cut(s)	371
MboI	GATC	1 cut(s)	369
MboII	GAAGA	2 cut(s)	203, 262
MluCI	AATT	4 cut(s)	82, 106, 179, 413
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	1 cut(s)	405
MnlI	CCTC	4 cut(s)	86, 126, 304, 388
MslI	CAYNNNNRTG	1 cut(s)	152
MspI	CCGG	1 cut(s)	295
MspR9I	CCNGG	1 cut(s)	296
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	2 cut(s)	169, 263
NciI	CCSGG	1 cut(s)	296
NdeII	GATC	1 cut(s)	369
NlaIII	CATG	5 cut(s)	65, 103, 124, 143, 425
NlaIV	GGNNCC	3 cut(s)	54, 162, 339
NmuCI	GTSAC	1 cut(s)	427
PagI	TCATGA	2 cut(s)	99, 139
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	331
PflMI	CCANNNNNTGG	1 cut(s)	17
PkrI	GCNGC	1 cut(s)	208
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
Ppu21I	YACGTR	2 cut(s)	70, 437
PpuMI	RGGWCCY	1 cut(s)	338
Psp5II	RGGWCCY	1 cut(s)	338
PspN4I	GGNNCC	3 cut(s)	54, 162, 339
PspPI	GGNCC	1 cut(s)	338
PspPPI	RGGWCCY	1 cut(s)	338
PstNI	CAGNNNCTG	1 cut(s)	366
RsaI	GTAC	3 cut(s)	217, 262, 439
RsaNI	GTAC	3 cut(s)	216, 261, 438
RseI	CAYNNNNRTG	1 cut(s)	152
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	1 cut(s)	369
Sau96I	GGNCC	1 cut(s)	338
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	296
SetI	ASST	8 cut(s)	16, 72, 228, 235, 268, 380, 398, 439
SfaNI	GCATC	1 cut(s)	106
SinI	GGWCC	1 cut(s)	338
SmiMI	CAYNNNNRTG	1 cut(s)	152
SnaBI	TACGTA	1 cut(s)	437
Sse9I	AATT	4 cut(s)	82, 106, 179, 413
SsiI	CCGC	1 cut(s)	207
SspMI	CTAG	1 cut(s)	227
StyD4I	CCNGG	1 cut(s)	294
StyI	CCWWGG	1 cut(s)	400
TaiI	ACGT	2 cut(s)	72, 439
TaqI	TCGA	2 cut(s)	78, 131
TaqII	GACCGA	1 cut(s)	399
TasI	AATT	4 cut(s)	82, 106, 179, 413
TatI	WGTACW	2 cut(s)	215, 260
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	1 cut(s)	331
TseFI	GTSAC	1 cut(s)	427
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	4 cut(s)	116, 128, 137, 344
Van91I	CCANNNNNTGG	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	338
XapI	RAATTY	2 cut(s)	106, 413
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.