Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029402.1

Orthogroup ID

OG0001412

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2437

Gene Structure 2437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029402.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 964 bp

atggggcattgctgcagcaaaagcgccgccgtttcggtggccaacaacaaccacgaacacccgacccccgcctccgccgtcgccgtccagcagtctaaacagccgccgatgctgacgagcccggtcgccggcgatgtgaagaacactccgtctcactcatttacggcgagtccgttcccgagcccgctcccggccggtgtggcgccgtcgccggcgaggacgccagggaggaagttcaggtggccgctgccgcctccgtcgccggcgaagccgatcatggccgcgtttcggcggcggagggaggcgaagccgaaggacgggccgataccggaggagaataatcaccagggcggcgaagaagaaggagagagggggctggacaagagctttgggtatgggaagaactttggggcgaaatttgaattggggaaggaggtgggccgagggcattttggtgatacttgctcggctaagggaaagaagggagagcttaagggtcagcctgtggctgtcaagatcatatccaaagcaaagatgacaacagcaatagctattgaagatgtccgtagagaggtgaaaatactgaaagcattatctggacataagaatctggtcaaattttatgatgcatttgaggatgccaataatgtctacatagtcatggagttgtgtgaaggtggagaactactggataaaattttgtccaggggtggaagatacacagaagaagatgctaaagttattgttgtgcaaattttaagtgttgttgcctactgtcatcttcaaggtgttgtgcatcgtgatctaaagccagagaattttctttttgccactagagaagaggatgcttcaatgagggttattgattttggtctctccgattttattaggcctgatcagcgcctcaacgatattgttggtagtgcatactatgttgcacctgaagtgctacatagatcctaca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

321

Amino Acids

35.06

Weight (kDa)

8.94

Isoelectric Point (pI)

50.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49370 AT5G24430
fragaria_vesca	FvH4_7g32610 FvH4_7g32610
malus_domestica	MD01G1227200.v1.1 MD07G1297500.v1.1
prunus_persica	Prupe.2G317200_v2.0.a1 Prupe.2G317200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0382501 RchiOBHm_Chr2g0138551 RchiOBHm_Chr2g0138561 RchiOBHm_Chr2g0161821 RchiOBHm_Chr6g0303421
rosa_laevigata	RLG00000007574 RLG00000010752 RLG00000023924 RLG00000026171 RLG00000031079 RLG00000034979 RLG00000035703 RLG00000036307
rosa_multiflora	Rmu_sc0000110.1_g000053 Rmu_sc0000110.1_g000055 Rmu_sc0003696.1_g000002 Rmu_sc0029402.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111900 Rroxscaffold_4G00278000 Rroxscaffold_7G00202700
rosa_rugosa	Rorug01G0435000
rosa_samantha	Rh1AG262900 Rh1AG460000 Rh1BG182300 Rh1BG416200 Rh1CG430000 Rh1DG212400 Rh1DG448600 Rh2AG553600 Rh2BG637900 Rh4AG140900 Rh4CG147700 Rh4CG147800 Rh5CG368300 Rh5CG374200 Rh6AG435500 Rh6CG169600 Rh6CG190900 Rh6DG161600 Rh7BG358800 Rh7CG197800 Rh7CG451800
rosa_wichuraiana	Rw1G001490 Rw1G041160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	202
AccBSI	CCGCTC	1 cut(s)	187
AccI	GTMKAC	1 cut(s)	651
AccII	CGCG	1 cut(s)	284
AclWI	GGATC	1 cut(s)	951
AcoI	YGGCCR	4 cut(s)	39, 192, 242, 279
AcsI	RAATTY	5 cut(s)	416, 617, 696, 753, 817
AcuI	CTGAAG	1 cut(s)	963
AcyI	GRCGYC	2 cut(s)	203, 221
AfiI	CCNNNNNNNGG	5 cut(s)	128, 190, 288, 317, 571
AflII	CTTAAG	1 cut(s)	491
AgsI	TTSAA	4 cut(s)	422, 557, 785, 852
AjnI	CCWGG	3 cut(s)	223, 345, 704
AjuI	GAANNNNNNNTTGG	2 cut(s)	407, 439
AluBI	AGCT	3 cut(s)	387, 490, 551
AluI	AGCT	3 cut(s)	387, 490, 551
Alw26I	GTCTC	2 cut(s)	156, 878
AlwI	GGATC	1 cut(s)	951
Ama87I	CYCGRG	1 cut(s)	178
AoxI	GGCC	7 cut(s)	39, 192, 242, 279, 320, 439, 890
ApeKI	GCWGC	3 cut(s)	12, 15, 247
ApoI	RAATTY	5 cut(s)	416, 617, 696, 753, 817
ArsI	GACNNNNNNTTYG	2 cut(s)	371, 403
AspLEI	GCGC	3 cut(s)	26, 205, 903
AspS9I	GGNCC	2 cut(s)	320, 439
AsuC2I	CCSGG	2 cut(s)	122, 191
AsuHPI	GGTGA	3 cut(s)	335, 467, 586
AvaI	CYCGRG	1 cut(s)	178
BalI	TGGCCA	1 cut(s)	41
BanI	GGYRCC	1 cut(s)	202
BanII	GRGCYC	2 cut(s)	122, 185
BbvI	GCAGC	2 cut(s)	27, 234
BceAI	ACGGC	5 cut(s)	14, 62, 68, 180, 190
BciT130I	CCWGG	3 cut(s)	225, 347, 706
BclI	TGATCA	1 cut(s)	895
BcnI	CCSGG	2 cut(s)	122, 191
BcoDI	GTCTC	2 cut(s)	156, 878
BfaI	CTAG	1 cut(s)	834
BfmI	CTRYAG	1 cut(s)	13
BfoI	RGCGCY	3 cut(s)	27, 206, 904
BfrI	CTTAAG	1 cut(s)	491
BglI	GCCNNNNNGGC	1 cut(s)	200
Bme1390I	CCNGG	5 cut(s)	122, 191, 225, 347, 706
BmeT110I	CYCGRG	1 cut(s)	178
BmgT120I	GGNCC	2 cut(s)	320, 439
BmiI	GGNNCC	1 cut(s)	204
BmrFI	CCNGG	5 cut(s)	122, 191, 225, 347, 706
BmsI	GCATC	6 cut(s)	99, 616, 628, 721, 805, 835
Bpu10I	CCTNAGC	1 cut(s)	471
BpuMI	CCSGG	2 cut(s)	122, 191
BsaHI	GRCGYC	2 cut(s)	203, 221
BsaI	GGTCTC	1 cut(s)	878
BsaJI	CCNNGG	4 cut(s)	224, 346, 442, 705
BsaWI	WCCGGW	1 cut(s)	328
Bsc4I	CCNNNNNNNGG	5 cut(s)	128, 190, 288, 317, 571
Bse118I	RCCGGY	4 cut(s)	128, 194, 211, 262
Bse1I	ACTGG	1 cut(s)	693
Bse3DI	GCAATG	1 cut(s)	7
BseBI	CCWGG	3 cut(s)	225, 347, 706
BseDI	CCNNGG	4 cut(s)	224, 346, 442, 705
BseGI	GGATG	2 cut(s)	643, 850
BseLI	CCNNNNNNNGG	5 cut(s)	128, 190, 288, 317, 571
BseMI	GCAATG	1 cut(s)	7
BseNI	ACTGG	1 cut(s)	693
BseRI	GAGGAG	1 cut(s)	347
BseX3I	CGGCCG	1 cut(s)	192
BseXI	GCAGC	2 cut(s)	27, 234
Bsh1236I	CGCG	1 cut(s)	284
Bsh1285I	CGRYCG	2 cut(s)	126, 195
BshFI	GGCC	7 cut(s)	41, 194, 244, 281, 322, 441, 892
BshNI	GGYRCC	1 cut(s)	202
BsiEI	CGRYCG	2 cut(s)	126, 195
BsiHKCI	CYCGRG	1 cut(s)	178
BsiSI	CCGG	7 cut(s)	122, 129, 191, 195, 212, 263, 329
BslI	CCNNNNNNNGG	5 cut(s)	128, 190, 288, 317, 571
BsmAI	GTCTC	2 cut(s)	156, 878
BsmBI	CGTCTC	1 cut(s)	156
BsnI	GGCC	7 cut(s)	41, 194, 244, 281, 322, 441, 892
Bso31I	GGTCTC	1 cut(s)	878
BsoBI	CYCGRG	1 cut(s)	178
Bsp1286I	GDGCHC	2 cut(s)	122, 185
Bsp143I	GATC	5 cut(s)	273, 516, 802, 895, 956
BspANI	GGCC	7 cut(s)	41, 194, 244, 281, 322, 441, 892
BspFNI	CGCG	1 cut(s)	284
BspLI	GGNNCC	1 cut(s)	204
BspMAI	CTGCAG	1 cut(s)	17
BspPI	GGATC	1 cut(s)	951
BspT107I	GGYRCC	1 cut(s)	202
BspTI	CTTAAG	1 cut(s)	491
BspTNI	GGTCTC	1 cut(s)	878
BsrBI	CCGCTC	1 cut(s)	187
BsrDI	GCAATG	1 cut(s)	7
BsrFI	RCCGGY	4 cut(s)	128, 194, 211, 262
BsrI	ACTGG	1 cut(s)	693
BssAI	RCCGGY	4 cut(s)	128, 194, 211, 262
BssECI	CCNNGG	4 cut(s)	224, 346, 442, 705
BssMI	GATC	5 cut(s)	273, 516, 802, 895, 956
BssNI	GRCGYC	2 cut(s)	203, 221
Bst2UI	CCWGG	3 cut(s)	225, 347, 706
Bst4CI	ACNGT	1 cut(s)	776
Bst6I	CTCTTC	1 cut(s)	834
BstACI	GRCGYC	2 cut(s)	203, 221
BstAFI	CTTAAG	1 cut(s)	491
BstC8I	GCNNGC	4 cut(s)	130, 185, 213, 264
BstDEI	CTNAG	1 cut(s)	471
BstF5I	GGATG	2 cut(s)	643, 850
BstFNI	CGCG	1 cut(s)	284
BstH2I	RGCGCY	3 cut(s)	27, 206, 904
BstHHI	GCGC	3 cut(s)	26, 205, 903
BstKTI	GATC	5 cut(s)	276, 519, 805, 898, 959
BstMAI	GTCTC	2 cut(s)	156, 878
BstMBI	GATC	5 cut(s)	273, 516, 802, 895, 956
BstMCI	CGRYCG	2 cut(s)	126, 195
BstMWI	GCNNNNNNNGC	7 cut(s)	21, 109, 200, 250, 259, 268, 898
BstNI	CCWGG	3 cut(s)	225, 347, 706
BstSCI	CCNGG	5 cut(s)	120, 189, 223, 345, 704
BstSFI	CTRYAG	1 cut(s)	13
BstUI	CGCG	1 cut(s)	284
BstV1I	GCAGC	2 cut(s)	27, 234
BstX2I	RGATCY	1 cut(s)	956
BstYI	RGATCY	1 cut(s)	956
BstZI	CGGCCG	1 cut(s)	192
BsuRI	GGCC	7 cut(s)	41, 194, 244, 281, 322, 441, 892
BtgZI	GCGATG	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	643, 850
Cac8I	GCNNGC	4 cut(s)	130, 185, 213, 264
CfoI	GCGC	3 cut(s)	26, 205, 903
Cfr10I	RCCGGY	4 cut(s)	128, 194, 211, 262
Cfr13I	GGNCC	2 cut(s)	320, 439
CseI	GACGC	1 cut(s)	229
CviAII	CATG	2 cut(s)	277, 661
DdeI	CTNAG	1 cut(s)	471
DinI	GGCGCC	1 cut(s)	204
DpnI	GATC	5 cut(s)	275, 518, 804, 897, 958
DpnII	GATC	5 cut(s)	273, 516, 802, 895, 956
EaeI	YGGCCR	4 cut(s)	39, 192, 242, 279
EagI	CGGCCG	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	834
EarI	CTCTTC	1 cut(s)	834
EciI	GGCGGA	2 cut(s)	64, 310
EclXI	CGGCCG	1 cut(s)	192
Eco147I	AGGCCT	1 cut(s)	892
Eco24I	GRGCYC	2 cut(s)	122, 185
Eco31I	GGTCTC	1 cut(s)	878
Eco52I	CGGCCG	1 cut(s)	192
Eco57I	CTGAAG	1 cut(s)	963
Eco88I	CYCGRG	1 cut(s)	178
EcoRII	CCWGG	3 cut(s)	223, 345, 704
EcoT22I	ATGCAT	1 cut(s)	631
EcoT38I	GRGCYC	2 cut(s)	122, 185
EgeI	GGCGCC	1 cut(s)	204
EheI	GGCGCC	1 cut(s)	204
Esp3I	CGTCTC	1 cut(s)	156
FaeI	CATG	2 cut(s)	280, 664
FatI	CATG	2 cut(s)	276, 660
FauI	CCCGC	2 cut(s)	76, 192
FbaI	TGATCA	1 cut(s)	895
FblI	GTMKAC	1 cut(s)	651
FokI	GGATG	2 cut(s)	650, 857
FriOI	GRGCYC	2 cut(s)	122, 185
FspBI	CTAG	1 cut(s)	834
GlaI	GCGC	3 cut(s)	25, 204, 902
HaeII	RGCGCY	3 cut(s)	27, 206, 904
HaeIII	GGCC	7 cut(s)	41, 194, 244, 281, 322, 441, 892
HapII	CCGG	7 cut(s)	122, 129, 191, 195, 212, 263, 329
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	3 cut(s)	26, 205, 903
Hin1I	GRCGYC	2 cut(s)	203, 221
Hin1II	CATG	2 cut(s)	280, 664
Hin6I	GCGC	3 cut(s)	24, 203, 901
HinP1I	GCGC	3 cut(s)	24, 203, 901
HinfI	GANTC	2 cut(s)	169, 607
HpaII	CCGG	7 cut(s)	122, 129, 191, 195, 212, 263, 329
HphI	GGTGA	3 cut(s)	335, 467, 586
Hpy166II	GTNNAC	1 cut(s)	652
Hpy188I	TCNGA	1 cut(s)	880
Hpy188III	TCNNGA	4 cut(s)	178, 514, 597, 800
Hpy8I	GTNNAC	1 cut(s)	652
Hpy99I	CGWCG	3 cut(s)	83, 211, 262
HpyAV	CCTTC	5 cut(s)	307, 356, 424, 475, 668
HpyCH4III	ACNGT	1 cut(s)	776
HpyCH4V	TGCA	6 cut(s)	15, 629, 751, 796, 926, 938
HpyF10VI	GCNNNNNNNGC	7 cut(s)	21, 109, 200, 250, 259, 268, 898
HpyF3I	CTNAG	1 cut(s)	471
Hsp92I	GRCGYC	2 cut(s)	203, 221
Hsp92II	CATG	2 cut(s)	280, 664
HspAI	GCGC	3 cut(s)	24, 203, 901
KasI	GGCGCC	1 cut(s)	202
KroI	GCCGGC	3 cut(s)	128, 211, 262
KroNI	GCCGGC	3 cut(s)	130, 213, 264
Ksp22I	TGATCA	1 cut(s)	895
Kzo9I	GATC	5 cut(s)	273, 516, 802, 895, 956
LmnI	GCTCC	1 cut(s)	192
Lsp1109I	GCAGC	2 cut(s)	27, 234
LweI	GCATC	6 cut(s)	99, 616, 628, 721, 805, 835
MaeI	CTAG	1 cut(s)	834
MalI	GATC	5 cut(s)	275, 518, 804, 897, 958
MbiI	CCGCTC	1 cut(s)	187
MboI	GATC	5 cut(s)	273, 516, 802, 895, 956
MflI	RGATCY	1 cut(s)	956
MhlI	GDGCHC	2 cut(s)	122, 185
MlsI	TGGCCA	1 cut(s)	41
MluCI	AATT	6 cut(s)	416, 422, 617, 696, 753, 817
MluNI	TGGCCA	1 cut(s)	41
Mly113I	GGCGCC	1 cut(s)	203
MlyI	GAGTC	1 cut(s)	178
Mox20I	TGGCCA	1 cut(s)	41
Mph1103I	ATGCAT	1 cut(s)	631
MreI	CGCCGGCG	3 cut(s)	128, 211, 262
MroNI	GCCGGC	3 cut(s)	128, 211, 262
MscI	TGGCCA	1 cut(s)	41
MseI	TTAA	2 cut(s)	492, 758
MslI	CAYNNNNRTG	2 cut(s)	453, 659
Msp20I	TGGCCA	1 cut(s)	41
MspA1I	CMGCKG	1 cut(s)	247
MspCI	CTTAAG	1 cut(s)	491
MspI	CCGG	7 cut(s)	122, 129, 191, 195, 212, 263, 329
MspR9I	CCNGG	5 cut(s)	122, 191, 225, 347, 706
MvaI	CCWGG	3 cut(s)	225, 347, 706
MvnI	CGCG	1 cut(s)	284
MwoI	GCNNNNNNNGC	7 cut(s)	21, 109, 200, 250, 259, 268, 898
NaeI	GCCGGC	3 cut(s)	130, 213, 264
NarI	GGCGCC	1 cut(s)	203
NciI	CCSGG	2 cut(s)	122, 191
NdeII	GATC	5 cut(s)	273, 516, 802, 895, 956
NgoMIV	GCCGGC	3 cut(s)	128, 211, 262
NlaIII	CATG	2 cut(s)	280, 664
NlaIV	GGNNCC	1 cut(s)	204
NmeAIII	GCCGAG	2 cut(s)	446, 467
NsiI	ATGCAT	1 cut(s)	631
PceI	AGGCCT	1 cut(s)	892
PcsI	WCGNNNNNNNCGW	1 cut(s)	170
PdiI	GCCGGC	3 cut(s)	130, 213, 264
PfeI	GAWTC	1 cut(s)	607
PleI	GAGTC	1 cut(s)	177
PluTI	GGCGCC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	177
Psp6I	CCWGG	3 cut(s)	223, 345, 704
PspGI	CCWGG	3 cut(s)	223, 345, 704
PspN4I	GGNNCC	1 cut(s)	204
PspPI	GGNCC	2 cut(s)	320, 439
PstI	CTGCAG	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	956
RseI	CAYNNNNRTG	2 cut(s)	453, 659
SaqAI	TTAA	2 cut(s)	492, 758
Sau3AI	GATC	5 cut(s)	273, 516, 802, 895, 956
Sau96I	GGNCC	2 cut(s)	320, 439
SchI	GAGTC	1 cut(s)	178
ScrFI	CCNGG	5 cut(s)	122, 191, 225, 347, 706
SduI	GDGCHC	2 cut(s)	122, 185
SetI	ASST	9 cut(s)	242, 389, 438, 492, 553, 576, 679, 790, 943
SfaNI	GCATC	6 cut(s)	99, 616, 628, 721, 805, 835
SfcI	CTRYAG	1 cut(s)	13
SfoI	GGCGCC	1 cut(s)	204
SgrAI	CRCCGGYG	3 cut(s)	128, 211, 262
SmiMI	CAYNNNNRTG	2 cut(s)	453, 659
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
Sse9I	AATT	6 cut(s)	416, 422, 617, 696, 753, 817
SseBI	AGGCCT	1 cut(s)	892
SspDI	GGCGCC	1 cut(s)	202
SspMI	CTAG	1 cut(s)	834
StuI	AGGCCT	1 cut(s)	892
StyD4I	CCNGG	5 cut(s)	120, 189, 223, 345, 704
TaaI	ACNGT	1 cut(s)	776
TasI	AATT	6 cut(s)	416, 422, 617, 696, 753, 817
TauI	GCSGC	7 cut(s)	29, 106, 247, 253, 284, 295, 354
TfiI	GAWTC	1 cut(s)	607
Tru1I	TTAA	2 cut(s)	492, 758
Tru9I	TTAA	2 cut(s)	492, 758
TseI	GCWGC	3 cut(s)	12, 15, 247
TspGWI	ACGGA	4 cut(s)	138, 162, 246, 554
Vha464I	CTTAAG	1 cut(s)	491
XapI	RAATTY	5 cut(s)	416, 617, 696, 753, 817
XmiI	GTMKAC	1 cut(s)	651
XspI	CTAG	1 cut(s)	834
Zsp2I	ATGCAT	1 cut(s)	631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.