RchiOBHm_Chr2g0138551

CDPK-related kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
56289099 .. 56290815
1717 bp
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UTR
Exon/CDS
Intron
PRQ50922

Sequence Viewer

Length: 330 bp
ATGTCTGTAGAGAGGTTGTGTGAAGGTGGAGAACTACTGGATAAAATTTTGTCCAGGGGTGGAAGATACACAGAAGAAGATGCTAAAGTTATTGTTGTGCAAATTTTAAGTATTATTGCCTGTTGTCATCTTCAAGATCAGCGCCTCAATGATATTGTTGGTAGTGCATACTATGTTGCACCTGAAGTGCTACATAGATCCTACAATGTTGAAGCAGATATGTGGAGCATAGGGGTAATAACATATATATTGCTATGTGGAAGTAGAGCTGAATCAGGAATATTCCGTTCGGTGCTAAGAGTTGATCCTAACTTTAATGATACACCTTGA

Protein Analysis

109

Amino Acids

12.18

Weight (kDa)

4.87

Isoelectric Point (pI)

46.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 47 - 89 2.9e-10 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 192, 299
AcsI RAATTY 2 cut(s) 45, 102
AcuI CTGAAG 1 cut(s) 204
AgsI TTSAA 2 cut(s) 134, 212
AjnI CCWGG 1 cut(s) 53
AluBI AGCT 1 cut(s) 269
AluI AGCT 1 cut(s) 269
AlwI GGATC 2 cut(s) 192, 299
ApoI RAATTY 2 cut(s) 45, 102
AspLEI GCGC 1 cut(s) 144
BciT130I CCWGG 1 cut(s) 55
BfmI CTRYAG 1 cut(s) 6
BfoI RGCGCY 1 cut(s) 145
Bme1390I CCNGG 1 cut(s) 55
BmrFI CCNGG 1 cut(s) 55
BmsI GCATC 1 cut(s) 70
BsaJI CCNNGG 1 cut(s) 54
Bse1I ACTGG 1 cut(s) 42
BseBI CCWGG 1 cut(s) 55
BseDI CCNNGG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 42
Bsp143I GATC 3 cut(s) 136, 197, 304
BspPI GGATC 2 cut(s) 192, 299
BsrI ACTGG 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 3 cut(s) 136, 197, 304
Bst2UI CCWGG 1 cut(s) 55
BstDEI CTNAG 1 cut(s) 296
BstH2I RGCGCY 1 cut(s) 145
BstHHI GCGC 1 cut(s) 144
BstKTI GATC 3 cut(s) 139, 200, 307
BstMBI GATC 3 cut(s) 136, 197, 304
BstNI CCWGG 1 cut(s) 55
BstSCI CCNGG 1 cut(s) 53
BstSFI CTRYAG 1 cut(s) 6
BstX2I RGATCY 1 cut(s) 197
BstYI RGATCY 1 cut(s) 197
CfoI GCGC 1 cut(s) 144
CviJI RGCY 1 cut(s) 269
CviKI_1 RGCY 1 cut(s) 269
DdeI CTNAG 1 cut(s) 296
DpnI GATC 3 cut(s) 138, 199, 306
DpnII GATC 3 cut(s) 136, 197, 304
Eco57I CTGAAG 1 cut(s) 204
EcoRII CCWGG 1 cut(s) 53
FaiI YATR 9 cut(s) 169, 174, 195, 221, 230, 244, 246, 248, 256
GlaI GCGC 1 cut(s) 143
HaeII RGCGCY 1 cut(s) 145
HhaI GCGC 1 cut(s) 144
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
HinfI GANTC 1 cut(s) 272
Hpy188III TCNNGA 2 cut(s) 134, 276
HpyAV CCTTC 1 cut(s) 17
HpyCH4V TGCA 3 cut(s) 100, 167, 179
HpyF3I CTNAG 1 cut(s) 296
HspAI GCGC 1 cut(s) 142
Kzo9I GATC 3 cut(s) 136, 197, 304
LmnI GCTCC 1 cut(s) 225
LpnPI CCDG 6 cut(s) 23, 40, 67, 133, 195, 261
LweI GCATC 1 cut(s) 70
MalI GATC 3 cut(s) 138, 199, 306
MboI GATC 3 cut(s) 136, 197, 304
MboII GAAGA 4 cut(s) 75, 86, 89, 122
MflI RGATCY 1 cut(s) 197
MluCI AATT 2 cut(s) 45, 102
MnlI CCTC 2 cut(s) 6, 155
MseI TTAA 2 cut(s) 107, 315
MspR9I CCNGG 1 cut(s) 55
MvaI CCWGG 1 cut(s) 55
NdeII GATC 3 cut(s) 136, 197, 304
PfeI GAWTC 1 cut(s) 272
Psp6I CCWGG 1 cut(s) 53
PspGI CCWGG 1 cut(s) 53
PsuI RGATCY 1 cut(s) 197
SaqAI TTAA 2 cut(s) 107, 315
Sau3AI GATC 3 cut(s) 136, 197, 304
ScrFI CCNGG 1 cut(s) 55
SetI ASST 5 cut(s) 17, 28, 184, 271, 328
SfaNI GCATC 1 cut(s) 70
SfcI CTRYAG 1 cut(s) 6
SgeI CNNG 7 cut(s) 50, 66, 67, 132, 146, 194, 288
Sse9I AATT 2 cut(s) 45, 102
SspI AATATT 1 cut(s) 282
StyD4I CCNGG 1 cut(s) 53
TasI AATT 2 cut(s) 45, 102
TfiI GAWTC 1 cut(s) 272
Tru1I TTAA 2 cut(s) 107, 315
Tru9I TTAA 2 cut(s) 107, 315
TspGWI ACGGA 1 cut(s) 275
XapI RAATTY 2 cut(s) 45, 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.