Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001412

Physical Location & Seq

Genomic Coordinates Forward (+)

58191675 .. 58193369

Gene Structure 1695 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034979

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTTGATGGGATACCCAGAGAGTGGAAGATACATAGAAGAAGAAGCTAAAGTTATTGTTGTGCAAATTCTAAGTGTTGTTGCCTATTGTCATCTTCAAGGTGTTGTGCATCGTGATCTAAAGCCAGAGAATTTTCCTTTTGCCTCAAGAGAAGAGGATGCTTCAATAAGGGTTATTGATTTTGGTCTCTTCAATTTTATTAGGCCTGATCAACGCCTCAACGATATTGTTGGTAGTGCATACTATGTTGCACCTGAAGTGGTACATAGATCCTATAGTGTTGAAGCAAATATGTGGAGCATAGGTGTAATAACATATATATTGCTATGTGGAAGTAGACCTTTCTGGGCACGAACTGAATCAGGAATCTTCCACTCGGTGCTAAGAGCTGATCCTAACTTTAATGATACACCTTGGCCCATAGTGTCCCCAAAAGCCAAAGATTTTGTCAAGAGGCTTCCGAACAAGGATCACAGAAAAAGAATTGACTGCTGCTCAAGCTTTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

170

Amino Acids

19.41

Weight (kDa)

7.7

Isoelectric Point (pI)

44.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	8 - 165	2.9e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	19 - 127	2.9e-09	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49370 AT5G24430
fragaria_vesca	FvH4_7g32610 FvH4_7g32610
malus_domestica	MD01G1227200.v1.1 MD07G1297500.v1.1
prunus_persica	Prupe.2G317200_v2.0.a1 Prupe.2G317200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0382501 RchiOBHm_Chr2g0138551 RchiOBHm_Chr2g0138561 RchiOBHm_Chr2g0161821 RchiOBHm_Chr6g0303421
rosa_laevigata	RLG00000007574 RLG00000010752 RLG00000023924 RLG00000026171 RLG00000031079 RLG00000034979 RLG00000035703 RLG00000036307
rosa_multiflora	Rmu_sc0000110.1_g000053 Rmu_sc0000110.1_g000055 Rmu_sc0003696.1_g000002 Rmu_sc0029402.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111900 Rroxscaffold_4G00278000 Rroxscaffold_7G00202700
rosa_rugosa	Rorug01G0435000
rosa_samantha	Rh1AG262900 Rh1AG460000 Rh1BG182300 Rh1BG416200 Rh1CG430000 Rh1DG212400 Rh1DG448600 Rh2AG553600 Rh2BG637900 Rh4AG140900 Rh4CG147700 Rh4CG147800 Rh5CG368300 Rh5CG374200 Rh6AG435500 Rh6CG169600 Rh6CG190900 Rh6DG161600 Rh7BG358800 Rh7CG197800 Rh7CG451800
rosa_wichuraiana	Rw1G001490 Rw1G041160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	23
AccI	GTMKAC	1 cut(s)	337
AclWI	GGATC	3 cut(s)	264, 386, 477
AcsI	RAATTY	2 cut(s)	66, 130
AcuI	CTGAAG	1 cut(s)	276
AdeI	CACNNNGTG	1 cut(s)	379
AfaI	GTAC	1 cut(s)	264
AfiI	CCNNNNNNNGG	1 cut(s)	23
AgsI	TTSAA	4 cut(s)	98, 165, 193, 284
AluBI	AGCT	3 cut(s)	47, 389, 501
AluI	AGCT	3 cut(s)	47, 389, 501
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	3 cut(s)	264, 386, 477
AoxI	GGCC	2 cut(s)	203, 416
ApeKI	GCWGC	1 cut(s)	492
ApoI	RAATTY	2 cut(s)	66, 130
ArsI	GACNNNNNNTTYG	2 cut(s)	432, 464
AspS9I	GGNCC	1 cut(s)	417
BaeGI	GKGCMC	1 cut(s)	352
BbvI	GCAGC	1 cut(s)	479
BciVI	GTATCC	1 cut(s)	5
BclI	TGATCA	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	191
BfmI	CTRYAG	1 cut(s)	274
BfuI	GTATCC	1 cut(s)	5
BisI	GCNGC	1 cut(s)	493
BlsI	GCNGC	1 cut(s)	494
BmgT120I	GGNCC	1 cut(s)	417
BmsI	GCATC	2 cut(s)	118, 148
BpuEI	CTTGAG	2 cut(s)	130, 481
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	413
BsaXI	ACNNNNNCTCC	2 cut(s)	289, 319
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
BseDI	CCNNGG	1 cut(s)	413
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseSI	GKGCMC	1 cut(s)	352
BseXI	GCAGC	1 cut(s)	479
BshFI	GGCC	2 cut(s)	205, 418
BslFI	GGGAC	1 cut(s)	412
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmAI	GTCTC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	412
BsnI	GGCC	2 cut(s)	205, 418
Bso31I	GGTCTC	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	352
Bsp143I	GATC	5 cut(s)	115, 208, 269, 391, 469
BspANI	GGCC	2 cut(s)	205, 418
BspPI	GGATC	3 cut(s)	264, 386, 477
BspTNI	GGTCTC	1 cut(s)	191
BssECI	CCNNGG	1 cut(s)	413
BssMI	GATC	5 cut(s)	115, 208, 269, 391, 469
BssT1I	CCWWGG	1 cut(s)	413
Bst6I	CTCTTC	2 cut(s)	147, 194
BstDEI	CTNAG	2 cut(s)	71, 383
BstF5I	GGATG	1 cut(s)	163
BstKTI	GATC	5 cut(s)	118, 211, 272, 394, 472
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	5 cut(s)	115, 208, 269, 391, 469
BstMWI	GCNNNNNNNGC	1 cut(s)	498
BstSFI	CTRYAG	1 cut(s)	274
BstSLI	GKGCMC	1 cut(s)	352
BstV1I	GCAGC	1 cut(s)	479
BstX2I	RGATCY	1 cut(s)	269
BstYI	RGATCY	1 cut(s)	269
BsuI	GTATCC	1 cut(s)	5
BsuRI	GGCC	2 cut(s)	205, 418
BtsCI	GGATG	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	417
Csp6I	GTAC	1 cut(s)	263
CviJI	RGCY	8 cut(s)	47, 124, 205, 389, 418, 437, 457, 501
CviKI_1	RGCY	8 cut(s)	47, 124, 205, 389, 418, 437, 457, 501
CviQI	GTAC	1 cut(s)	263
DdeI	CTNAG	2 cut(s)	71, 383
DpnI	GATC	5 cut(s)	117, 210, 271, 393, 471
DpnII	GATC	5 cut(s)	115, 208, 269, 391, 469
DraIII	CACNNNGTG	1 cut(s)	379
Eam1104I	CTCTTC	2 cut(s)	147, 194
EarI	CTCTTC	2 cut(s)	147, 194
Eco130I	CCWWGG	1 cut(s)	413
Eco147I	AGGCCT	1 cut(s)	205
Eco31I	GGTCTC	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	413
ErhI	CCWWGG	1 cut(s)	413
FalI	AAGNNNNNCTT	2 cut(s)	325, 357
FaqI	GGGAC	1 cut(s)	412
FbaI	TGATCA	1 cut(s)	208
FblI	GTMKAC	1 cut(s)	337
Fnu4HI	GCNGC	1 cut(s)	493
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	1 cut(s)	493
GluI	GCNGC	1 cut(s)	493
HaeIII	GGCC	2 cut(s)	205, 418
HindIII	AAGCTT	1 cut(s)	499
HinfI	GANTC	2 cut(s)	359, 366
Hpy166II	GTNNAC	1 cut(s)	338
Hpy188I	TCNGA	1 cut(s)	462
Hpy188III	TCNNGA	4 cut(s)	113, 147, 363, 451
Hpy8I	GTNNAC	1 cut(s)	338
HpyCH4V	TGCA	4 cut(s)	64, 109, 239, 251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	498
HpyF3I	CTNAG	2 cut(s)	71, 383
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	5 cut(s)	115, 208, 269, 391, 469
LmnI	GCTCC	1 cut(s)	297
LpnPI	CCDG	6 cut(s)	30, 138, 219, 267, 331, 348
Lsp1109I	GCAGC	1 cut(s)	479
LweI	GCATC	2 cut(s)	118, 148
MalI	GATC	5 cut(s)	117, 210, 271, 393, 471
MboI	GATC	5 cut(s)	115, 208, 269, 391, 469
MboII	GAAGA	7 cut(s)	39, 50, 53, 86, 164, 181, 361
MflI	RGATCY	1 cut(s)	269
MhlI	GDGCHC	1 cut(s)	352
MluCI	AATT	4 cut(s)	66, 130, 193, 483
MnlI	CCTC	4 cut(s)	148, 154, 227, 447
MseI	TTAA	2 cut(s)	402, 504
MwoI	GCNNNNNNNGC	1 cut(s)	498
NdeII	GATC	5 cut(s)	115, 208, 269, 391, 469
PceI	AGGCCT	1 cut(s)	205
PfeI	GAWTC	2 cut(s)	359, 366
PflMI	CCANNNNNTGG	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	494
PspPI	GGNCC	1 cut(s)	417
PsuI	RGATCY	1 cut(s)	269
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
SaqAI	TTAA	2 cut(s)	402, 504
SatI	GCNGC	1 cut(s)	493
Sau3AI	GATC	5 cut(s)	115, 208, 269, 391, 469
Sau96I	GGNCC	1 cut(s)	417
SduI	GDGCHC	1 cut(s)	352
SetI	ASST	8 cut(s)	49, 103, 256, 307, 343, 391, 415, 503
SfaNI	GCATC	2 cut(s)	118, 148
SfcI	CTRYAG	1 cut(s)	274
SmlI	CTYRAG	2 cut(s)	145, 496
SmoI	CTYRAG	2 cut(s)	145, 496
Sse9I	AATT	4 cut(s)	66, 130, 193, 483
SseBI	AGGCCT	1 cut(s)	205
StuI	AGGCCT	1 cut(s)	205
StyI	CCWWGG	1 cut(s)	413
TasI	AATT	4 cut(s)	66, 130, 193, 483
TfiI	GAWTC	2 cut(s)	359, 366
Tru1I	TTAA	2 cut(s)	402, 504
Tru9I	TTAA	2 cut(s)	402, 504
TseI	GCWGC	1 cut(s)	492
Van91I	CCANNNNNTGG	1 cut(s)	23
XapI	RAATTY	2 cut(s)	66, 130
XmiI	GTMKAC	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.