RLG00000010752

CDPK-related kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
4096347 .. 4098117
1771 bp
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UTR
Exon/CDS
Intron
RLM00000010752

Sequence Viewer

Length: 510 bp
ATGGAAGTCTGGGAAGGTAACCGTCCACCGCTGGAGCAAGGAAGCTTGGGTCTACGGCCACTGCTGGTTCTAATAGTGAGCTATTCCGAGCCTACTGCCGACGGCGGGGGTGGAAGATACATAGAAGAAGATGCTAAAGTTATTGTTGTGCAAATTCTAAGTGTTGTTGCCTATTGTCATCTTCAAGGTGTTGTGCATCGTGATCTAAAGCCAGAGAATTTTCTTTTTGCCATAAGAGAAGAGGATGCTTCAATAAGGGTTATTGATTTTGGTCTCTTCGATTTTATTAAGCCTGATCAACGCCTCAACGATATTGTTGGTAGTGCGTACTATGTTGCACCTGAAGTGGTACATAGATCCTACAGTGTTGAAGCAAATATGTGGAGCATAGGTGTAATAACATATATATTGCTTTATGGAAGTAGACCTTTCTGGGCACGAACTGAATCAGGAATCTTCCGCTTAGTGCTAAGAGCTGATCCTAACTTTATGATACACCTTGGCCCATAG

Protein Analysis

170

Amino Acids

19.07

Weight (kDa)

5.17

Isoelectric Point (pI)

38.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 40 - 158 8.8e-34 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 48 - 156 1.2e-10 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 52, 424
AciI CCGC 3 cut(s) 29, 105, 460
AclWI GGATC 2 cut(s) 351, 473
AcoI YGGCCR 1 cut(s) 56
AcsI RAATTY 2 cut(s) 153, 217
AcuI CTGAAG 1 cut(s) 363
AfaI GTAC 2 cut(s) 329, 351
AfiI CCNNNNNNNGG 1 cut(s) 105
AgsI TTSAA 3 cut(s) 185, 252, 371
AluBI AGCT 3 cut(s) 45, 81, 476
AluI AGCT 3 cut(s) 45, 81, 476
Alw26I GTCTC 1 cut(s) 278
AlwI GGATC 2 cut(s) 351, 473
AoxI GGCC 2 cut(s) 56, 502
ApoI RAATTY 2 cut(s) 153, 217
AspS9I GGNCC 1 cut(s) 503
BaeGI GKGCMC 1 cut(s) 439
BceAI ACGGC 2 cut(s) 71, 118
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BclI TGATCA 1 cut(s) 295
BcoDI GTCTC 1 cut(s) 278
BfmI CTRYAG 1 cut(s) 361
BmgT120I GGNCC 1 cut(s) 503
BmsI GCATC 3 cut(s) 121, 205, 235
BpmI CTGGAG 1 cut(s) 53
BsaI GGTCTC 1 cut(s) 278
BsaJI CCNNGG 1 cut(s) 499
BsaXI ACNNNNNCTCC 2 cut(s) 376, 406
Bsc4I CCNNNNNNNGG 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 499
BseGI GGATG 1 cut(s) 250
BseLI CCNNNNNNNGG 1 cut(s) 105
BseSI GKGCMC 1 cut(s) 439
BshFI GGCC 2 cut(s) 58, 504
BslI CCNNNNNNNGG 1 cut(s) 105
BsmAI GTCTC 1 cut(s) 278
BsnI GGCC 2 cut(s) 58, 504
Bso31I GGTCTC 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 439
Bsp143I GATC 4 cut(s) 202, 295, 356, 478
BspACI CCGC 3 cut(s) 29, 105, 460
BspANI GGCC 2 cut(s) 58, 504
BspPI GGATC 2 cut(s) 351, 473
BspTNI GGTCTC 1 cut(s) 278
BssECI CCNNGG 1 cut(s) 499
BssMI GATC 4 cut(s) 202, 295, 356, 478
BssT1I CCWWGG 1 cut(s) 499
Bst4CI ACNGT 2 cut(s) 23, 365
Bst6I CTCTTC 2 cut(s) 234, 281
BstDEI CTNAG 3 cut(s) 158, 463, 470
BstEII GGTNACC 1 cut(s) 17
BstF5I GGATG 1 cut(s) 250
BstKTI GATC 4 cut(s) 205, 298, 359, 481
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 4 cut(s) 202, 295, 356, 478
BstPI GGTNACC 1 cut(s) 17
BstSFI CTRYAG 1 cut(s) 361
BstSLI GKGCMC 1 cut(s) 439
BstX2I RGATCY 1 cut(s) 356
BstYI RGATCY 1 cut(s) 356
BsuRI GGCC 2 cut(s) 58, 504
BtsCI GGATG 1 cut(s) 250
BtsI GCAGTG 1 cut(s) 59
BtsIMutI CAGTG 2 cut(s) 59, 370
Cfr13I GGNCC 1 cut(s) 503
Csp6I GTAC 2 cut(s) 328, 350
CviJI RGCY 8 cut(s) 45, 58, 81, 91, 211, 292, 476, 504
CviKI_1 RGCY 8 cut(s) 45, 58, 81, 91, 211, 292, 476, 504
CviQI GTAC 2 cut(s) 328, 350
DdeI CTNAG 3 cut(s) 158, 463, 470
DpnI GATC 4 cut(s) 204, 297, 358, 480
DpnII GATC 4 cut(s) 202, 295, 356, 478
EaeI YGGCCR 1 cut(s) 56
Eam1104I CTCTTC 2 cut(s) 234, 281
EarI CTCTTC 2 cut(s) 234, 281
Eco130I CCWWGG 1 cut(s) 499
Eco31I GGTCTC 1 cut(s) 278
Eco57I CTGAAG 1 cut(s) 363
Eco91I GGTNACC 1 cut(s) 17
EcoO65I GGTNACC 1 cut(s) 17
EcoT14I CCWWGG 1 cut(s) 499
ErhI CCWWGG 1 cut(s) 499
FalI AAGNNNNNCTT 2 cut(s) 412, 444
FauI CCCGC 1 cut(s) 98
FbaI TGATCA 1 cut(s) 295
FblI GTMKAC 2 cut(s) 52, 424
FokI GGATG 1 cut(s) 257
GsuI CTGGAG 1 cut(s) 53
HaeIII GGCC 2 cut(s) 58, 504
HindIII AAGCTT 1 cut(s) 43
HinfI GANTC 2 cut(s) 446, 453
Hpy166II GTNNAC 3 cut(s) 26, 53, 425
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 2 cut(s) 200, 450
Hpy8I GTNNAC 3 cut(s) 26, 53, 425
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 8
HpyCH4III ACNGT 2 cut(s) 23, 365
HpyCH4V TGCA 3 cut(s) 151, 196, 338
HpyF3I CTNAG 3 cut(s) 158, 463, 470
Ksp22I TGATCA 1 cut(s) 295
Kzo9I GATC 4 cut(s) 202, 295, 356, 478
LmnI GCTCC 2 cut(s) 34, 384
LpnPI CCDG 7 cut(s) 17, 50, 225, 306, 354, 418, 435
LweI GCATC 3 cut(s) 121, 205, 235
MaeIII GTNAC 1 cut(s) 17
MalI GATC 4 cut(s) 204, 297, 358, 480
MboI GATC 4 cut(s) 202, 295, 356, 478
MboII GAAGA 7 cut(s) 126, 137, 140, 173, 251, 268, 448
MflI RGATCY 1 cut(s) 356
MhlI GDGCHC 1 cut(s) 439
MluCI AATT 2 cut(s) 153, 217
MnlI CCTC 2 cut(s) 235, 314
MseI TTAA 1 cut(s) 288
MspA1I CMGCKG 1 cut(s) 31
NdeII GATC 4 cut(s) 202, 295, 356, 478
PfeI GAWTC 2 cut(s) 446, 453
PspEI GGTNACC 1 cut(s) 17
PspPI GGNCC 1 cut(s) 503
PsuI RGATCY 1 cut(s) 356
RsaI GTAC 2 cut(s) 329, 351
RsaNI GTAC 2 cut(s) 328, 350
SaqAI TTAA 1 cut(s) 288
Sau3AI GATC 4 cut(s) 202, 295, 356, 478
Sau96I GGNCC 1 cut(s) 503
SduI GDGCHC 1 cut(s) 439
SetI ASST 9 cut(s) 19, 47, 83, 190, 343, 394, 430, 478, 501
SfaNI GCATC 3 cut(s) 121, 205, 235
SfcI CTRYAG 1 cut(s) 361
Sse9I AATT 2 cut(s) 153, 217
SsiI CCGC 3 cut(s) 29, 105, 460
StyI CCWWGG 1 cut(s) 499
TaaI ACNGT 2 cut(s) 23, 365
TaqI TCGA 1 cut(s) 279
TasI AATT 2 cut(s) 153, 217
TfiI GAWTC 2 cut(s) 446, 453
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TscAI CASTG 2 cut(s) 66, 370
TspRI CASTG 2 cut(s) 66, 370
XapI RAATTY 2 cut(s) 153, 217
XmiI GTMKAC 2 cut(s) 52, 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.