Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003696.1

Orthogroup ID

OG0001412

Physical Location & Seq

Genomic Coordinates Forward (+)

4177 .. 5450

Gene Structure 1274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003696.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgtatgagccaccttttggggcaatgtctgtgttttccggtgtgtgtttggctcagtttacactcttggaacccaaacatggatacgtgtccctcgataatttcagaacggctctcatgaaaaattcaactgatgccatgaaggagtcgagggttcatgacatcataaatgtgatggagccactcgcgcacaagaaattggactttgaagagttctgcgttgccgcaataagtacatatcagctagaagctcttgaagggtgggagaagattgcaagtacagcttttgagtgttttgaaagggaaggaaaccgggtcatctctgttgaggagttggcacaggaaatgaatctgggtcctacatcttactctctactcagagactggatcagaacctccgaccgaaaacttagcttccttggatacaccaaatttttgcatggtgtgacaatacgtacttccaataccagacaccgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

159

Amino Acids

18.21

Weight (kDa)

5.96

Isoelectric Point (pI)

26.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49370 AT5G24430
fragaria_vesca	FvH4_7g32610 FvH4_7g32610
malus_domestica	MD01G1227200.v1.1 MD07G1297500.v1.1
prunus_persica	Prupe.2G317200_v2.0.a1 Prupe.2G317200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0382501 RchiOBHm_Chr2g0138551 RchiOBHm_Chr2g0138561 RchiOBHm_Chr2g0161821 RchiOBHm_Chr6g0303421
rosa_laevigata	RLG00000007574 RLG00000010752 RLG00000023924 RLG00000026171 RLG00000031079 RLG00000034979 RLG00000035703 RLG00000036307
rosa_multiflora	Rmu_sc0000110.1_g000053 Rmu_sc0000110.1_g000055 Rmu_sc0003696.1_g000002 Rmu_sc0029402.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111900 Rroxscaffold_4G00278000 Rroxscaffold_7G00202700
rosa_rugosa	Rorug01G0435000
rosa_samantha	Rh1AG262900 Rh1AG460000 Rh1BG182300 Rh1BG416200 Rh1CG430000 Rh1DG212400 Rh1DG448600 Rh2AG553600 Rh2BG637900 Rh4AG140900 Rh4CG147700 Rh4CG147800 Rh5CG368300 Rh5CG374200 Rh6AG435500 Rh6CG169600 Rh6CG190900 Rh6DG161600 Rh7BG358800 Rh7CG197800 Rh7CG451800
rosa_wichuraiana	Rw1G001490 Rw1G041160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	17
AccII	CGCG	1 cut(s)	188
AciI	CCGC	1 cut(s)	225
AclWI	GGATC	1 cut(s)	395
AcsI	RAATTY	2 cut(s)	124, 431
AfaI	GTAC	3 cut(s)	235, 280, 457
AfiI	CCNNNNNNNGG	2 cut(s)	17, 80
AflIII	ACRYGT	1 cut(s)	87
AgsI	TTSAA	4 cut(s)	129, 209, 257, 299
AluBI	AGCT	4 cut(s)	244, 251, 284, 414
AluI	AGCT	4 cut(s)	244, 251, 284, 414
Alw26I	GTCTC	1 cut(s)	375
AlwI	GGATC	1 cut(s)	395
AlwNI	CAGNNNCTG	1 cut(s)	384
ApoI	RAATTY	2 cut(s)	124, 431
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	1 cut(s)	356
AsuC2I	CCSGG	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	356
BccI	CCATC	1 cut(s)	169
BceAI	ACGGC	1 cut(s)	126
BciVI	GTATCC	2 cut(s)	77, 416
BcnI	CCSGG	1 cut(s)	314
BcoDI	GTCTC	1 cut(s)	375
BfaI	CTAG	1 cut(s)	245
BfuI	GTATCC	2 cut(s)	77, 416
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
Bme1390I	CCNGG	1 cut(s)	314
Bme18I	GGWCC	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	356
BmiI	GGNNCC	3 cut(s)	72, 180, 357
BmrFI	CCNGG	1 cut(s)	314
BmsI	GCATC	1 cut(s)	124
BpuMI	CCSGG	1 cut(s)	314
BsaAI	YACGTR	2 cut(s)	88, 455
BsaJI	CCNNGG	1 cut(s)	418
BsaWI	WCCGGW	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 80
Bse1I	ACTGG	1 cut(s)	389
Bse3DI	GCAATG	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	418
BseLI	CCNNNNNNNGG	2 cut(s)	17, 80
BseMI	GCAATG	1 cut(s)	30
BseMII	CTCAG	2 cut(s)	68, 391
BseNI	ACTGG	1 cut(s)	389
BseRI	GAGGAG	1 cut(s)	344
Bsh1236I	CGCG	1 cut(s)	188
Bsh1285I	CGRYCG	1 cut(s)	403
BsiEI	CGRYCG	1 cut(s)	403
BsiSI	CCGG	2 cut(s)	39, 313
BslFI	GGGAC	1 cut(s)	76
BslI	CCNNNNNNNGG	2 cut(s)	17, 80
BsmAI	GTCTC	1 cut(s)	375
BsmFI	GGGAC	1 cut(s)	76
Bsp143I	GATC	1 cut(s)	387
BspACI	CCGC	1 cut(s)	225
BspCNI	CTCAG	2 cut(s)	67, 390
BspFNI	CGCG	1 cut(s)	188
BspHI	TCATGA	2 cut(s)	117, 157
BspLI	GGNNCC	3 cut(s)	72, 180, 357
BspPI	GGATC	1 cut(s)	395
BsrDI	GCAATG	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	389
BssECI	CCNNGG	1 cut(s)	418
BssMI	GATC	1 cut(s)	387
BssT1I	CCWWGG	1 cut(s)	418
Bst6I	CTCTTC	1 cut(s)	204
BstBAI	YACGTR	2 cut(s)	88, 455
BstDEI	CTNAG	3 cut(s)	54, 377, 410
BstFNI	CGCG	1 cut(s)	188
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	1 cut(s)	390
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	1 cut(s)	387
BstMCI	CGRYCG	1 cut(s)	403
BstMWI	GCNNNNNNNGC	2 cut(s)	187, 281
BstSCI	CCNGG	1 cut(s)	312
BstSNI	TACGTA	1 cut(s)	455
BstUI	CGCG	1 cut(s)	188
BsuI	GTATCC	2 cut(s)	77, 416
CaiI	CAGNNNCTG	1 cut(s)	384
CciI	TCATGA	2 cut(s)	117, 157
CfoI	GCGC	1 cut(s)	190
Cfr13I	GGNCC	1 cut(s)	356
Csp6I	GTAC	3 cut(s)	234, 279, 456
CviAII	CATG	5 cut(s)	80, 118, 139, 158, 440
CviJI	RGCY	8 cut(s)	10, 53, 113, 181, 244, 251, 284, 414
CviKI_1	RGCY	8 cut(s)	10, 53, 113, 181, 244, 251, 284, 414
CviQI	GTAC	3 cut(s)	234, 279, 456
DdeI	CTNAG	3 cut(s)	54, 377, 410
DpnI	GATC	1 cut(s)	389
DpnII	GATC	1 cut(s)	387
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco105I	TACGTA	1 cut(s)	455
Eco130I	CCWWGG	1 cut(s)	418
Eco47I	GGWCC	1 cut(s)	356
EcoO109I	RGGNCCY	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	418
ErhI	CCWWGG	1 cut(s)	418
FaeI	CATG	5 cut(s)	83, 121, 142, 161, 443
FaiI	YATR	8 cut(s)	6, 81, 119, 140, 159, 167, 238, 441
FalI	AAGNNNNNCTT	2 cut(s)	268, 300
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	5 cut(s)	79, 117, 138, 157, 439
Fnu4HI	GCNGC	1 cut(s)	225
Fsp4HI	GCNGC	1 cut(s)	225
FspBI	CTAG	1 cut(s)	245
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	1 cut(s)	225
HapII	CCGG	2 cut(s)	39, 313
HhaI	GCGC	1 cut(s)	190
Hin1II	CATG	5 cut(s)	83, 121, 142, 161, 443
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HinfI	GANTC	2 cut(s)	146, 349
HpaII	CCGG	2 cut(s)	39, 313
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	4 cut(s)	107, 380, 392, 400
Hpy188III	TCNNGA	3 cut(s)	118, 158, 254
Hpy8I	GTNNAC	1 cut(s)	60
HpyAV	CCTTC	3 cut(s)	136, 251, 299
HpyCH4IV	ACGT	2 cut(s)	87, 454
HpyCH4V	TGCA	2 cut(s)	275, 439
HpyF10VI	GCNNNNNNNGC	2 cut(s)	187, 281
HpyF3I	CTNAG	3 cut(s)	54, 377, 410
HpySE526I	ACGT	2 cut(s)	87, 454
Hsp92II	CATG	5 cut(s)	83, 121, 142, 161, 443
HspAI	GCGC	1 cut(s)	188
Kzo9I	GATC	1 cut(s)	387
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	5 cut(s)	52, 326, 326, 338, 370
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	245
MaeII	ACGT	2 cut(s)	87, 454
MaeIII	GTNAC	1 cut(s)	445
MalI	GATC	1 cut(s)	389
MboI	GATC	1 cut(s)	387
MboII	GAAGA	2 cut(s)	221, 280
MluCI	AATT	4 cut(s)	100, 124, 197, 431
MlyI	GAGTC	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	423
MnlI	CCTC	4 cut(s)	104, 144, 322, 406
MslI	CAYNNNNRTG	1 cut(s)	170
MspI	CCGG	2 cut(s)	39, 313
MspR9I	CCNGG	1 cut(s)	314
MvnI	CGCG	1 cut(s)	188
MwoI	GCNNNNNNNGC	2 cut(s)	187, 281
NciI	CCSGG	1 cut(s)	314
NdeII	GATC	1 cut(s)	387
NlaIII	CATG	5 cut(s)	83, 121, 142, 161, 443
NlaIV	GGNNCC	3 cut(s)	72, 180, 357
NmuCI	GTSAC	1 cut(s)	445
PagI	TCATGA	2 cut(s)	117, 157
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	349
PflMI	CCANNNNNTGG	1 cut(s)	17
PkrI	GCNGC	1 cut(s)	226
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
Ppu21I	YACGTR	2 cut(s)	88, 455
PpuMI	RGGWCCY	1 cut(s)	356
Psp5II	RGGWCCY	1 cut(s)	356
PspN4I	GGNNCC	3 cut(s)	72, 180, 357
PspPI	GGNCC	1 cut(s)	356
PspPPI	RGGWCCY	1 cut(s)	356
PstNI	CAGNNNCTG	1 cut(s)	384
RsaI	GTAC	3 cut(s)	235, 280, 457
RsaNI	GTAC	3 cut(s)	234, 279, 456
RseI	CAYNNNNRTG	1 cut(s)	170
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	1 cut(s)	387
Sau96I	GGNCC	1 cut(s)	356
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	1 cut(s)	314
SetI	ASST	8 cut(s)	16, 90, 246, 253, 286, 398, 416, 457
SfaNI	GCATC	1 cut(s)	124
SinI	GGWCC	1 cut(s)	356
SmiMI	CAYNNNNRTG	1 cut(s)	170
SnaBI	TACGTA	1 cut(s)	455
Sse9I	AATT	4 cut(s)	100, 124, 197, 431
SsiI	CCGC	1 cut(s)	225
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	1 cut(s)	312
StyI	CCWWGG	1 cut(s)	418
TaiI	ACGT	2 cut(s)	90, 457
TaqI	TCGA	2 cut(s)	96, 149
TaqII	GACCGA	1 cut(s)	417
TasI	AATT	4 cut(s)	100, 124, 197, 431
TatI	WGTACW	2 cut(s)	233, 278
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	1 cut(s)	349
TseFI	GTSAC	1 cut(s)	445
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	4 cut(s)	134, 146, 155, 362
Van91I	CCANNNNNTGG	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	356
XapI	RAATTY	2 cut(s)	124, 431
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.