Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001412

Physical Location & Seq

Genomic Coordinates Forward (+)

24262159 .. 24278910

Gene Structure 16752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG161600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGGAGTACGTGGGTGGAAGATACACAGAAGAAGATGCTAAAGTTATTGTTGTGCAAATTTTAAGTGTTATTGCCTATTGTCATCTTCAAGGTGTTGTGGATCGTGATCTAAAGCCAGAGTGGTACACAGATGAAATGGTTTCACAAATTGTTGTTGGTGCAGTTGTTGCAGGTGATTATAGAATTTGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

64

Amino Acids

7.17

Weight (kDa)

4.45

Isoelectric Point (pI)

18.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	6 - 40	9.4e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49370 AT5G24430
fragaria_vesca	FvH4_7g32610 FvH4_7g32610
malus_domestica	MD01G1227200.v1.1 MD07G1297500.v1.1
prunus_persica	Prupe.2G317200_v2.0.a1 Prupe.2G317200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0382501 RchiOBHm_Chr2g0138551 RchiOBHm_Chr2g0138561 RchiOBHm_Chr2g0161821 RchiOBHm_Chr6g0303421
rosa_laevigata	RLG00000007574 RLG00000010752 RLG00000023924 RLG00000026171 RLG00000031079 RLG00000034979 RLG00000035703 RLG00000036307
rosa_multiflora	Rmu_sc0000110.1_g000053 Rmu_sc0000110.1_g000055 Rmu_sc0003696.1_g000002 Rmu_sc0029402.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111900 Rroxscaffold_4G00278000 Rroxscaffold_7G00202700
rosa_rugosa	Rorug01G0435000
rosa_samantha	Rh1AG262900 Rh1AG460000 Rh1BG182300 Rh1BG416200 Rh1CG430000 Rh1DG212400 Rh1DG448600 Rh2AG553600 Rh2BG637900 Rh4AG140900 Rh4CG147700 Rh4CG147800 Rh5CG368300 Rh5CG374200 Rh6AG435500 Rh6CG169600 Rh6CG190900 Rh6DG161600 Rh7BG358800 Rh7CG197800 Rh7CG451800
rosa_wichuraiana	Rw1G001490 Rw1G041160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	161
Acc36I	ACCTGC	1 cut(s)	161
AclWI	GGATC	1 cut(s)	108
AcsI	RAATTY	2 cut(s)	57, 183
AfaI	GTAC	2 cut(s)	8, 125
AgsI	TTSAA	1 cut(s)	89
AlwI	GGATC	1 cut(s)	108
ApoI	RAATTY	2 cut(s)	57, 183
AsuHPI	GGTGA	1 cut(s)	185
BfuAI	ACCTGC	1 cut(s)	161
BmsI	GCATC	1 cut(s)	25
BsaAI	YACGTR	1 cut(s)	10
BsaBI	GATNNNNATC	1 cut(s)	105
Bse8I	GATNNNNATC	1 cut(s)	105
BseJI	GATNNNNATC	1 cut(s)	105
BsgI	GTGCAG	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	100, 106
BspMI	ACCTGC	1 cut(s)	161
BspPI	GGATC	1 cut(s)	108
BssMI	GATC	2 cut(s)	100, 106
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstBAI	YACGTR	1 cut(s)	10
BstKTI	GATC	2 cut(s)	103, 109
BstMBI	GATC	2 cut(s)	100, 106
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BveI	ACCTGC	1 cut(s)	161
Csp6I	GTAC	2 cut(s)	7, 124
CviJI	RGCY	1 cut(s)	115
CviKI_1	RGCY	1 cut(s)	115
CviQI	GTAC	2 cut(s)	7, 124
DpnI	GATC	2 cut(s)	102, 108
DpnII	GATC	2 cut(s)	100, 106
FaiI	YATR	1 cut(s)	180
FspEI	CC	8 cut(s)	75, 83, 88, 106, 122, 129, 141, 156
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188III	TCNNGA	1 cut(s)	104
Hpy8I	GTNNAC	1 cut(s)	126
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	3 cut(s)	55, 161, 170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpySE526I	ACGT	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	100, 106
LpnPI	CCDG	2 cut(s)	129, 156
LweI	GCATC	1 cut(s)	25
MaeII	ACGT	1 cut(s)	9
MalI	GATC	2 cut(s)	102, 108
MboI	GATC	2 cut(s)	100, 106
MboII	GAAGA	4 cut(s)	30, 41, 44, 77
MluCI	AATT	3 cut(s)	57, 147, 183
MseI	TTAA	2 cut(s)	62, 193
MwoI	GCNNNNNNNGC	1 cut(s)	167
NdeII	GATC	2 cut(s)	100, 106
PaqCI	CACCTGC	1 cut(s)	161
Ppu21I	YACGTR	1 cut(s)	10
RsaI	GTAC	2 cut(s)	8, 125
RsaNI	GTAC	2 cut(s)	7, 124
SaqAI	TTAA	2 cut(s)	62, 193
Sau3AI	GATC	2 cut(s)	100, 106
SetI	ASST	3 cut(s)	12, 94, 175
SfaNI	GCATC	1 cut(s)	25
SgeI	CNNG	5 cut(s)	22, 101, 116, 128, 183
Sse9I	AATT	3 cut(s)	57, 147, 183
TaiI	ACGT	1 cut(s)	12
TasI	AATT	3 cut(s)	57, 147, 183
Tru1I	TTAA	2 cut(s)	62, 193
Tru9I	TTAA	2 cut(s)	62, 193
TspDTI	ATGAA	1 cut(s)	147
XapI	RAATTY	2 cut(s)	57, 183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.