Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001412

Physical Location & Seq

Genomic Coordinates Forward (+)

18375487 .. 18377349

Gene Structure 1863 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007574

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGAAGTATGGGAAGGTAACTGGCCACCGCTAGAGCAAGCAGTCTTGGGTCCCCAGCCACCGCTGGTTCTAATCATGAGCTGTTCCGAGCCTACAGCCGACAACGAAAAACCTATTTTGAAAATTGATATGATTTTCGCTCATCCCTTTCACTTTCAGGGTGGAAGATACATAGAAGAAGATGCTAAAGTTATTGTTGTGCAAATTCTAAGTGTTGTTGCCTATTGTCATCTTCAAGGTGTTGTGCATCGTGATCTAAAGCCAGAGAACCTTAGTTCTACTTGTGCAGATCAGCGCCTCAACGATATTGTTGGTAGTGCATACTATGTTGCACCTAAAGTGGTACATAGATCCTACAGTGTTGAAGCAAATATGTGGAGCATAGGTGTAATAACATATATGTTGCTATGTGGAAGTAGACCTTTCTGGGCACGAACTGAATCAGGAATCTTCCGCTCGGTGCTAAAAGTTGATCCTAACTTTAATGATACACCTTGGCACATAGTGTCCCCAAAAGCCAAAGATTTTGTCAAGAGGCTTCTGAACAAGGATCACAGAAAAAGAATTGACTGCTGCTCAAGCTTTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

197

Amino Acids

22.3

Weight (kDa)

7.65

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	55 - 192	1.9e-27	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49370 AT5G24430
fragaria_vesca	FvH4_7g32610 FvH4_7g32610
malus_domestica	MD01G1227200.v1.1 MD07G1297500.v1.1
prunus_persica	Prupe.2G317200_v2.0.a1 Prupe.2G317200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0382501 RchiOBHm_Chr2g0138551 RchiOBHm_Chr2g0138561 RchiOBHm_Chr2g0161821 RchiOBHm_Chr6g0303421
rosa_laevigata	RLG00000007574 RLG00000010752 RLG00000023924 RLG00000026171 RLG00000031079 RLG00000034979 RLG00000035703 RLG00000036307
rosa_multiflora	Rmu_sc0000110.1_g000053 Rmu_sc0000110.1_g000055 Rmu_sc0003696.1_g000002 Rmu_sc0029402.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111900 Rroxscaffold_4G00278000 Rroxscaffold_7G00202700
rosa_rugosa	Rorug01G0435000
rosa_samantha	Rh1AG262900 Rh1AG460000 Rh1BG182300 Rh1BG416200 Rh1CG430000 Rh1DG212400 Rh1DG448600 Rh2AG553600 Rh2BG637900 Rh4AG140900 Rh4CG147700 Rh4CG147800 Rh5CG368300 Rh5CG374200 Rh6AG435500 Rh6CG169600 Rh6CG190900 Rh6DG161600 Rh7BG358800 Rh7CG197800 Rh7CG451800
rosa_wichuraiana	Rw1G001490 Rw1G041160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	456
AccI	GTMKAC	1 cut(s)	418
AciI	CCGC	3 cut(s)	29, 62, 454
AclWI	GGATC	3 cut(s)	345, 467, 558
AcoI	YGGCCR	1 cut(s)	23
AcsI	RAATTY	1 cut(s)	204
AdeI	CACNNNGTG	1 cut(s)	505
AfaI	GTAC	1 cut(s)	345
AgsI	TTSAA	3 cut(s)	121, 236, 365
AluBI	AGCT	2 cut(s)	81, 582
AluI	AGCT	2 cut(s)	81, 582
AlwI	GGATC	3 cut(s)	345, 467, 558
AoxI	GGCC	1 cut(s)	23
ApeKI	GCWGC	1 cut(s)	573
ApoI	RAATTY	1 cut(s)	204
ArsI	GACNNNNNNTTYG	2 cut(s)	513, 545
AspLEI	GCGC	1 cut(s)	297
AspS9I	GGNCC	1 cut(s)	50
AvaII	GGWCC	1 cut(s)	50
BaeGI	GKGCMC	1 cut(s)	433
BalI	TGGCCA	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	560
BfaI	CTAG	1 cut(s)	32
BfmI	CTRYAG	2 cut(s)	93, 355
BfoI	RGCGCY	1 cut(s)	298
BisI	GCNGC	1 cut(s)	574
BlsI	GCNGC	1 cut(s)	575
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	2 cut(s)	51, 52
BmsI	GCATC	2 cut(s)	172, 256
BpuEI	CTTGAG	1 cut(s)	562
BsaJI	CCNNGG	1 cut(s)	494
BsaXI	ACNNNNNCTCC	2 cut(s)	370, 400
Bse1I	ACTGG	1 cut(s)	26
BseDI	CCNNGG	1 cut(s)	494
BseGI	GGATG	1 cut(s)	142
BseNI	ACTGG	1 cut(s)	26
BseSI	GKGCMC	1 cut(s)	433
BseXI	GCAGC	1 cut(s)	560
BseYI	CCCAGC	1 cut(s)	54
BsgI	GTGCAG	1 cut(s)	306
BshFI	GGCC	1 cut(s)	25
BslFI	GGGAC	2 cut(s)	36, 493
BsmFI	GGGAC	2 cut(s)	36, 493
BsnI	GGCC	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	433
Bsp143I	GATC	5 cut(s)	253, 289, 350, 472, 550
BspACI	CCGC	3 cut(s)	29, 62, 454
BspANI	GGCC	1 cut(s)	25
BspHI	TCATGA	1 cut(s)	75
BspLI	GGNNCC	2 cut(s)	51, 52
BspPI	GGATC	3 cut(s)	345, 467, 558
BsrBI	CCGCTC	1 cut(s)	456
BsrI	ACTGG	1 cut(s)	26
BssECI	CCNNGG	1 cut(s)	494
BssMI	GATC	5 cut(s)	253, 289, 350, 472, 550
BssT1I	CCWWGG	1 cut(s)	494
Bst4CI	ACNGT	1 cut(s)	359
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	2 cut(s)	209, 272
BstF5I	GGATG	1 cut(s)	142
BstH2I	RGCGCY	1 cut(s)	298
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	5 cut(s)	256, 292, 353, 475, 553
BstMBI	GATC	5 cut(s)	253, 289, 350, 472, 550
BstMWI	GCNNNNNNNGC	1 cut(s)	579
BstSFI	CTRYAG	2 cut(s)	93, 355
BstSLI	GKGCMC	1 cut(s)	433
BstV1I	GCAGC	1 cut(s)	560
BstX2I	RGATCY	1 cut(s)	350
BstYI	RGATCY	1 cut(s)	350
BsuRI	GGCC	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	364
Cac8I	GCNNGC	1 cut(s)	39
CciI	TCATGA	1 cut(s)	75
CfoI	GCGC	1 cut(s)	297
Cfr13I	GGNCC	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	344
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	9 cut(s)	25, 58, 81, 91, 98, 262, 518, 538, 582
CviKI_1	RGCY	9 cut(s)	25, 58, 81, 91, 98, 262, 518, 538, 582
CviQI	GTAC	1 cut(s)	344
DdeI	CTNAG	2 cut(s)	209, 272
DpnI	GATC	5 cut(s)	255, 291, 352, 474, 552
DpnII	GATC	5 cut(s)	253, 289, 350, 472, 550
DraIII	CACNNNGTG	1 cut(s)	505
EaeI	YGGCCR	1 cut(s)	23
Eco130I	CCWWGG	1 cut(s)	494
Eco47I	GGWCC	1 cut(s)	50
EcoO109I	RGGNCCY	1 cut(s)	50
EcoT14I	CCWWGG	1 cut(s)	494
ErhI	CCWWGG	1 cut(s)	494
FaeI	CATG	1 cut(s)	79
FalI	AAGNNNNNCTT	2 cut(s)	406, 438
FaqI	GGGAC	2 cut(s)	36, 493
FatI	CATG	1 cut(s)	75
FblI	GTMKAC	1 cut(s)	418
Fnu4HI	GCNGC	1 cut(s)	574
FokI	GGATG	1 cut(s)	129
Fsp4HI	GCNGC	1 cut(s)	574
FspBI	CTAG	1 cut(s)	32
GlaI	GCGC	1 cut(s)	296
GluI	GCNGC	1 cut(s)	574
GsaI	CCCAGC	1 cut(s)	58
HaeII	RGCGCY	1 cut(s)	298
HaeIII	GGCC	1 cut(s)	25
HhaI	GCGC	1 cut(s)	297
Hin1II	CATG	1 cut(s)	79
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HindIII	AAGCTT	1 cut(s)	580
HinfI	GANTC	2 cut(s)	440, 447
Hpy166II	GTNNAC	1 cut(s)	419
Hpy188I	TCNGA	2 cut(s)	88, 543
Hpy188III	TCNNGA	4 cut(s)	76, 251, 444, 532
Hpy8I	GTNNAC	1 cut(s)	419
HpyAV	CCTTC	1 cut(s)	8
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4V	TGCA	5 cut(s)	202, 247, 287, 320, 332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	579
HpyF3I	CTNAG	2 cut(s)	209, 272
Hsp92II	CATG	1 cut(s)	79
HspAI	GCGC	1 cut(s)	295
KflI	GGGWCCC	1 cut(s)	50
Kzo9I	GATC	5 cut(s)	253, 289, 350, 472, 550
LmnI	GCTCC	1 cut(s)	378
LpnPI	CCDG	7 cut(s)	7, 50, 68, 143, 276, 412, 429
Lsp1109I	GCAGC	1 cut(s)	560
LweI	GCATC	2 cut(s)	172, 256
MaeI	CTAG	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	5 cut(s)	255, 291, 352, 474, 552
MbiI	CCGCTC	1 cut(s)	456
MboI	GATC	5 cut(s)	253, 289, 350, 472, 550
MboII	GAAGA	5 cut(s)	177, 188, 191, 224, 442
MflI	RGATCY	1 cut(s)	350
MhlI	GDGCHC	1 cut(s)	433
MlsI	TGGCCA	1 cut(s)	25
MluCI	AATT	3 cut(s)	123, 204, 564
MluNI	TGGCCA	1 cut(s)	25
MnlI	CCTC	2 cut(s)	308, 528
Mox20I	TGGCCA	1 cut(s)	25
MscI	TGGCCA	1 cut(s)	25
MseI	TTAA	2 cut(s)	483, 585
Msp20I	TGGCCA	1 cut(s)	25
MspA1I	CMGCKG	1 cut(s)	64
MwoI	GCNNNNNNNGC	1 cut(s)	579
NdeII	GATC	5 cut(s)	253, 289, 350, 472, 550
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	2 cut(s)	51, 52
PagI	TCATGA	1 cut(s)	75
PfeI	GAWTC	2 cut(s)	440, 447
PkrI	GCNGC	1 cut(s)	575
PpuMI	RGGWCCY	1 cut(s)	50
Psp5II	RGGWCCY	1 cut(s)	50
PspFI	CCCAGC	1 cut(s)	54
PspN4I	GGNNCC	2 cut(s)	51, 52
PspPI	GGNCC	1 cut(s)	50
PspPPI	RGGWCCY	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	350
RsaI	GTAC	1 cut(s)	345
RsaNI	GTAC	1 cut(s)	344
SaqAI	TTAA	2 cut(s)	483, 585
SatI	GCNGC	1 cut(s)	574
Sau3AI	GATC	5 cut(s)	253, 289, 350, 472, 550
Sau96I	GGNCC	1 cut(s)	50
SduI	GDGCHC	1 cut(s)	433
SfaNI	GCATC	2 cut(s)	172, 256
SfcI	CTRYAG	2 cut(s)	93, 355
SinI	GGWCC	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	577
SmoI	CTYRAG	1 cut(s)	577
Sse9I	AATT	3 cut(s)	123, 204, 564
SsiI	CCGC	3 cut(s)	29, 62, 454
SspMI	CTAG	1 cut(s)	32
StyI	CCWWGG	1 cut(s)	494
TaaI	ACNGT	1 cut(s)	359
TasI	AATT	3 cut(s)	123, 204, 564
TfiI	GAWTC	2 cut(s)	440, 447
Tru1I	TTAA	2 cut(s)	483, 585
Tru9I	TTAA	2 cut(s)	483, 585
TscAI	CASTG	1 cut(s)	364
TseI	GCWGC	1 cut(s)	573
TspRI	CASTG	1 cut(s)	364
VpaK11BI	GGWCC	1 cut(s)	50
XapI	RAATTY	1 cut(s)	204
XmiI	GTMKAC	1 cut(s)	418
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.