Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000540

Physical Location & Seq

Genomic Coordinates Reverse (-)

11735161 .. 11738373

Gene Structure 3213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1141100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2427 bp

ATGCAAAGCTTTCTCAAACATGCAGAGCGGCTCAAGAGGAAGAACGAGACCGTTCGCAGCATCATGGCGACTTTGCGAGAATTGATTTATGAAGCCGAAGACATACTAGCAGATTGTCAACTTCACCCGAGAGATGATGGTCTGCTTTCGAGTGGTTGGTTCATGTGCATCTACCCTTCGAAAATTCCATTCCAATATCAAACCGGGAAGAGCCTTGCAGAAATCAACCGGAAAATTGGTAACATTAAGCAGAACATTACGTCGTATCTTGGAGTTCCACTTTTGAATCAAGTGGAGCCATTGGATGCACAAAATGACCTATTGCCTAGATGGAGCGGTCCTGTGTATGACCATACGCAGGTCGTTGGTTTGGAAGGTGATGCGAGTAAGATCAAACAATGGTTATTTGAGGCTGACAAGGGCATACTAGCTATTGGAGTTGTGGGAATGGGTGGACTTGGCAAGACTACTATTGCTCAAAAAGTATTTAATGACAGGAAAATTGAGGAGCGCTTCGAAAGGAGAATTTGGGTATCGGTTTCTCAAAAATTCGATGAAGAACAAATCATGAGAAGTATTTTACGGAACTTGGGAGATGCTAGTGTAGGAGACGACAAGGGTGAATTATTGAAGAAGATAAATGAATATCTTTTAGGCAAGAGGTATTTGATTGTGATGGATGATGTGTGGAGCTTGGATGTTACTTGGTGGCTCAGAATTAATGAAGCATTGCCAAAAGGAAATGGAAGTAGTGTCATCATTACTACGAGGATAGAGAAGGTTGCACAGAAGATGGGAGTGAAGGAAGCAAGATCACATTGGCCCAAATGCCTCAGCAAAGATGATAGTTGGCTGCTATTTCGGAAGATTGCATTTGCGGAAAATGGAGGTGAGTGTATGTATCCAGAGCTAGAAAATGTTGGAAAGGAGATTGTTGAGAAGTGTAAGGGCCTTCCACTAGCAATCAAGGCCGTTGGAGGAATAATGCTTTGTAAACCATCGCGCTATCATGAGTGGAGGAGAATTGCAGACCATTTTCGTGATGAGTTAGCAGAAAATGATAACTCGGTTATGGCTTCTCTACAATTGAGTTACGATGAACTTCCATCTTACTTGAAGTCATGCTTCCTCTGCTTGTCACTTTACCCGGAGGATTGCATCATAGCCAAAGACCAGTTGGTCCATTGGTGGCTTGGAGAAGGTTTTATTCCTTTGAGAAGTGGTAGATCAGCAATTGCAGCAGGGGAAGATTGCTTCTCAGGGCTAACAAATCGATGTTTGCTAGAAGTGGTCAACAAGACTTATCATGGAACAATCTCCACATGTAAAATTCATGACATGGTACGCGATGTGGTGATAAAAATGGCGGAAGATGATGCATTTTTCAGACCGGATGGTAGAAATTGCCGCCATTTGGGCATTACAAGTAGTATACTTCAGAAGGACAATCATAAGTTGAGAGCATTGTTGTCTACAACTAAGACCGGTGAAGTGAACAAGATTGGTTCACACACTGCAAAGAAATTTTGCGAGTCTAGATACCTTCGCGCAATGGATATTTCAAGGTCAATCTTCAGTATGCCTCTCTCTAGTCTTTTAAATCAGATTGGATTTTTGCAACACCTAACATACCTTAACTTAAGCAACACGCATCCATTGGTTCAACTCCCGCCTTCGCTCGACAAGCTTAACAACCTTCAGATATTGGATGTCAGCTACTGTCAAAACTTAAAAACATTGCCTCCCTGCATTGTGACATTCAAGAAGTTAAGGGTTTTAGACATAAGCAATTGCGGTTCACTCAAATATCTACCTAAAGGCTTAGGAAGGCTTTCAAATCTTGAAGTGTTATCAGGATTCAGACCCGCCAAATCAAGCCAGTTAGAAGGTTGCAGGATCGGCGAGATCAGAAATTTAATTCGACTTAGGACACTCGGGCTTCAACTAACCTGCTCCGATGAGATTGGAGATACTGAGGTCAATGTGTTGATAAATCTACAAGAACTGCAGCATCTGTCAATAAGTTGTTTCGATAGTCACCACAATGATGATCTCGTCACCAAGCTTGACAAGTTGTTCCCTCCTCAGCAGCTCCATGAGCTGAGTCTAAAGTTTTATCCCGGAAAGATTAGTCCAGTCTGGCTCAATCCCATCTCGCTTCCTATTTTGAGGTACCTTTCGATATCATCAGGCAATCTTGAGAAGATGAATGAAAGGTTCTGGGGGCTTAATGACAATGCTGTTTGGAAAATTGAGGGCTTAATGTTGGAATCTCTTTCGGATTTCCACGAAGAATGGGCGAGGGTTGGACAAGTTATGCCGGCGTTAAGAGTTGTGATTGTAAGTTGGTGTCCGGAGTTGGTGTCCTTTCCGATTGAGGATGTCGGGTTTAAAGGTGGTGTCTGGAAGGAAGAAACGAAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0023052 GO:0042742 GO:0043207 GO:0043621 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

809

Amino Acids

91.68

Weight (kDa)

7.94

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	1 - 42	3.6e-08	Rx N-terminal domain
NB-ARC	PF00931	126 - 295	5.3e-47	NB-ARC domain
WHD_DRP	PF23559	381 - 452	5.2e-16	Disease resistance protein Winged helix domain
LRR_14	PF23598	513 - 734	2.5e-31	Leucine-rich repeat region
LRR_R13L1-DRL21	PF25019	635 - 736	4.7e-07	R13L1/DRL21 LRRs

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50950 AT3G50950
fragaria_vesca	FvH4_1g12710 FvH4_1g12710 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820
malus_domestica	MD02G1141100.v1.1 MD10G1333100.v1.1
prunus_persica	Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.6G150700_v2.0.a1 Prupe.7G160100_v2.0.a1 Prupe.7G160100_v2.0.a1
pyrus_communis	pycom02g11110 pycom10g28240 pycom10g28340 pycom10g28360 pycom10g28450
rosa_chinensis	RchiOBHm_Chr2g0100711 RchiOBHm_Chr3g0485861 RchiOBHm_Chr4g0391451 RchiOBHm_Chr4g0391591 RchiOBHm_Chr4g0391601 RchiOBHm_Chr4g0391681 RchiOBHm_Chr5g0001141 RchiOBHm_Chr5g0001221
rosa_laevigata	RLG00000017001
rosa_multiflora	Rmu_co8260007.1_g000001 Rmu_co8260103.1_g000001 Rmu_co8519155.1_g000001 Rmu_sc0000060.1_g000050 Rmu_sc0000255.1_g000036 Rmu_sc0001174.1_g000023 Rmu_sc0001174.1_g000025 Rmu_sc0001659.1_g000009 Rmu_sc0001706.1_g000009 Rmu_sc0001706.1_g000024 Rmu_sc0001706.1_g000035 Rmu_sc0004189.1_g000018 Rmu_sc0004189.1_g000030 Rmu_sc0004862.1_g000002 Rmu_sc0004876.1_g000038 Rmu_sc0023741.1_g000004
rosa_roxburghii	Rroxscaffold_1G00075100 Rroxscaffold_1G00075160 Rroxscaffold_1G00075210 Rroxscaffold_5G00337160 Rroxscaffold_5G00386590 Rroxscaffold_6G00396300
rosa_rugosa	Rorug03G0336200 Rorug03G0336300 Rorug04G0389400
rosa_samantha	Rh2AG140400 Rh2BG144100 Rh2CG145400 Rh2DG144900 Rh3AG271200 Rh4AG038000 Rh4AG038700 Rh4BG032000 Rh4BG032800 Rh4CG041100 Rh4CG041300 Rh4DG035500 Rh4DG035600 Rh5AG008800 Rh5AG009100 Rh5BG010900 Rh5BG011500 Rh5BG011600 Rh5BG012000 Rh5CG009400 Rh5CG010000 Rh5DG009800
rosa_wichuraiana	Rw2G010940 Rw4G002950 Rw4G002990 Rw4G003000 Rw5G000880 Rw5G000950 Rw5G000960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1178
Acc36I	ACCTGC	2 cut(s)	349, 1958
Acc65I	GGTACC	1 cut(s)	2172
AccB1I	GGYRCC	1 cut(s)	2172
AccBSI	CCGCTC	2 cut(s)	28, 336
AccI	GTMKAC	2 cut(s)	1432, 1472
AccII	CGCG	3 cut(s)	1003, 1347, 1548
AccIII	TCCGGA	1 cut(s)	2353
AciI	CCGC	8 cut(s)	28, 336, 878, 1367, 1408, 1670, 1794, 1866
AclWI	GGATC	1 cut(s)	1904
AcsI	RAATTY	6 cut(s)	183, 525, 548, 1329, 1523, 1912
AcuI	CTGAAG	3 cut(s)	1421, 1558, 1682
AfaI	GTAC	2 cut(s)	1344, 2174
AfeI	AGCGCT	1 cut(s)	512
AfiI	CCNNNNNNNGG	2 cut(s)	358, 1414
AflII	CTTAAG	1 cut(s)	1639
AflIII	ACRYGT	1 cut(s)	1322
AgeI	ACCGGT	1 cut(s)	1484
AgsI	TTSAA	9 cut(s)	286, 631, 1117, 1563, 1664, 1762, 1836, 1844, 1943
AluBI	AGCT	9 cut(s)	9, 431, 693, 910, 1687, 1716, 2065, 2092, 2101
AluI	AGCT	9 cut(s)	9, 431, 693, 910, 1687, 1716, 2065, 2092, 2101
Alw26I	GTCTC	2 cut(s)	41, 603
AlwI	GGATC	1 cut(s)	1904
AlwNI	CAGNNNCTG	2 cut(s)	1719, 2014
Ama87I	CYCGRG	2 cut(s)	127, 1934
Aor13HI	TCCGGA	1 cut(s)	2353
Aor51HI	AGCGCT	1 cut(s)	512
AoxI	GGCC	3 cut(s)	821, 949, 969
ApeKI	GCWGC	5 cut(s)	57, 853, 1238, 2008, 2089
ApoI	RAATTY	6 cut(s)	183, 525, 548, 1329, 1523, 1912
AseI	ATTAAT	1 cut(s)	720
AsiGI	ACCGGT	1 cut(s)	1484
Asp700I	GAANNNNTTC	1 cut(s)	1831
Asp718I	GGTACC	1 cut(s)	2172
AspLEI	GCGC	3 cut(s)	513, 1005, 1550
AspS9I	GGNCC	4 cut(s)	338, 822, 949, 1180
AsuC2I	CCSGG	3 cut(s)	205, 1148, 2121
AsuHPI	GGTGA	8 cut(s)	116, 389, 632, 902, 1366, 1499, 2030, 2050
AsuII	TTCGAA	2 cut(s)	179, 516
AvaI	CYCGRG	2 cut(s)	127, 1934
AvaII	GGWCC	2 cut(s)	338, 1180
BaeI	ACNNNNGTAYC	2 cut(s)	1962, 1995
BanI	GGYRCC	1 cut(s)	2172
BbsI	GAAGAC	1 cut(s)	105
BbvCI	CCTCAGC	2 cut(s)	833, 2085
BbvI	GCAGC	5 cut(s)	69, 840, 1250, 2020, 2101
BccI	CCATC	8 cut(s)	131, 324, 670, 787, 1006, 1114, 1388, 2159
BceAI	ACGGC	1 cut(s)	956
BciVI	GTATCC	1 cut(s)	912
BcnI	CCSGG	3 cut(s)	205, 1148, 2121
BcoDI	GTCTC	2 cut(s)	41, 603
BfaI	CTAG	9 cut(s)	107, 327, 428, 600, 911, 959, 1283, 1536, 1590
BfmI	CTRYAG	1 cut(s)	2006
BfoI	RGCGCY	1 cut(s)	514
BfrI	CTTAAG	1 cut(s)	1639
BfuAI	ACCTGC	2 cut(s)	349, 1958
BfuI	GTATCC	1 cut(s)	912
BglI	GCCNNNNNGGC	1 cut(s)	1416
BisI	GCNGC	7 cut(s)	29, 58, 854, 1239, 1408, 2009, 2090
BlsI	GCNGC	7 cut(s)	30, 59, 855, 1240, 1409, 2010, 2091
Bme1390I	CCNGG	3 cut(s)	205, 1148, 2121
Bme18I	GGWCC	2 cut(s)	338, 1180
BmeT110I	CYCGRG	2 cut(s)	127, 1934
BmgT120I	GGNCC	4 cut(s)	338, 822, 949, 1180
BmiI	GGNNCC	2 cut(s)	297, 2174
BmrFI	CCNGG	3 cut(s)	205, 1148, 2121
BmsI	GCATC	9 cut(s)	69, 177, 295, 370, 586, 1167, 1366, 1660, 2020
BpiI	GAAGAC	1 cut(s)	105
Bpu10I	CCTNAGC	3 cut(s)	833, 1822, 2085
Bpu14I	TTCGAA	2 cut(s)	179, 516
BpuEI	CTTGAG	2 cut(s)	17, 2219
BpuMI	CCSGG	3 cut(s)	205, 1148, 2121
Bsa29I	ATCGAT	1 cut(s)	1273
BsaI	GGTCTC	1 cut(s)	41
BsaWI	WCCGGW	4 cut(s)	228, 1390, 1484, 2353
BsaXI	ACNNNNNCTCC	4 cut(s)	1726, 1756, 2348, 2378
Bsc4I	CCNNNNNNNGG	2 cut(s)	358, 1414
Bse118I	RCCGGY	2 cut(s)	1484, 2320
Bse1I	ACTGG	3 cut(s)	1174, 1879, 2135
Bse3DI	GCAATG	3 cut(s)	728, 1557, 1736
BseAI	TCCGGA	1 cut(s)	2353
BseCI	ATCGAT	1 cut(s)	1273
BseGI	GGATG	7 cut(s)	310, 685, 703, 1399, 1651, 1714, 2386
BseLI	CCNNNNNNNGG	2 cut(s)	358, 1414
BseMI	GCAATG	3 cut(s)	728, 1557, 1736
BseMII	CTCAG	6 cut(s)	727, 847, 1272, 1965, 2093, 2099
BseNI	ACTGG	3 cut(s)	1174, 1879, 2135
BseRI	GAGGAG	3 cut(s)	521, 1033, 2073
BseXI	GCAGC	5 cut(s)	69, 840, 1250, 2020, 2101
Bsh1236I	CGCG	3 cut(s)	1003, 1347, 1548
BshFI	GGCC	3 cut(s)	823, 951, 971
BshNI	GGYRCC	1 cut(s)	2172
BshTI	ACCGGT	1 cut(s)	1484
BshVI	ATCGAT	1 cut(s)	1273
BsiHKCI	CYCGRG	2 cut(s)	127, 1934
BsiSI	CCGG	8 cut(s)	204, 229, 1148, 1391, 1485, 2121, 2321, 2354
BslI	CCNNNNNNNGG	2 cut(s)	358, 1414
BsmAI	GTCTC	2 cut(s)	41, 603
BsmBI	CGTCTC	1 cut(s)	603
BsnI	GGCC	3 cut(s)	823, 951, 971
Bso31I	GGTCTC	1 cut(s)	41
BsoBI	CYCGRG	2 cut(s)	127, 1934
Bsp119I	TTCGAA	2 cut(s)	179, 516
Bsp13I	TCCGGA	1 cut(s)	2353
Bsp143I	GATC	6 cut(s)	390, 812, 1226, 1896, 1905, 2050
BspACI	CCGC	8 cut(s)	28, 336, 878, 1367, 1408, 1670, 1794, 1866
BspANI	GGCC	3 cut(s)	823, 951, 971
BspCNI	CTCAG	6 cut(s)	726, 846, 1271, 1966, 2094, 2098
BspDI	ATCGAT	1 cut(s)	1273
BspEI	TCCGGA	1 cut(s)	2353
BspFNI	CGCG	3 cut(s)	1003, 1347, 1548
BspHI	TCATGA	3 cut(s)	567, 1009, 1333
BspLI	GGNNCC	2 cut(s)	297, 2174
BspMAI	CTGCAG	1 cut(s)	2010
BspMI	ACCTGC	2 cut(s)	349, 1958
BspPI	GGATC	1 cut(s)	1904
BspQI	GCTCTTC	1 cut(s)	203
BspT104I	TTCGAA	2 cut(s)	179, 516
BspT107I	GGYRCC	1 cut(s)	2172
BspTI	CTTAAG	1 cut(s)	1639
BspTNI	GGTCTC	1 cut(s)	41
BsrBI	CCGCTC	2 cut(s)	28, 336
BsrDI	GCAATG	3 cut(s)	728, 1557, 1736
BsrFI	RCCGGY	2 cut(s)	1484, 2320
BsrI	ACTGG	3 cut(s)	1174, 1879, 2135
BssAI	RCCGGY	2 cut(s)	1484, 2320
BssMI	GATC	6 cut(s)	390, 812, 1226, 1896, 1905, 2050
BssNAI	GTATAC	1 cut(s)	1433
Bst1107I	GTATAC	1 cut(s)	1433
Bst4CI	ACNGT	2 cut(s)	52, 1721
Bst6I	CTCTTC	1 cut(s)	203
BstAFI	CTTAAG	1 cut(s)	1639
BstBI	TTCGAA	2 cut(s)	179, 516
BstC8I	GCNNGC	1 cut(s)	2322
BstDEI	CTNAG	9 cut(s)	713, 833, 1258, 1479, 1822, 1925, 1974, 2085, 2102
BstF5I	GGATG	7 cut(s)	310, 685, 703, 1399, 1651, 1714, 2386
BstFNI	CGCG	3 cut(s)	1003, 1347, 1548
BstH2I	RGCGCY	1 cut(s)	514
BstHHI	GCGC	3 cut(s)	513, 1005, 1550
BstKTI	GATC	6 cut(s)	393, 815, 1229, 1899, 1908, 2053
BstMAI	GTCTC	2 cut(s)	41, 603
BstMBI	GATC	6 cut(s)	390, 812, 1226, 1896, 1905, 2050
BstMWI	GCNNNNNNNGC	7 cut(s)	968, 1131, 1238, 1416, 1684, 1899, 2098
BstNSI	RCATGY	2 cut(s)	23, 1326
BstSCI	CCNGG	3 cut(s)	203, 1146, 2119
BstSFI	CTRYAG	1 cut(s)	2006
BstUI	CGCG	3 cut(s)	1003, 1347, 1548
BstV1I	GCAGC	5 cut(s)	69, 840, 1250, 2020, 2101
BstV2I	GAAGAC	1 cut(s)	105
BstZ17I	GTATAC	1 cut(s)	1433
Bsu15I	ATCGAT	1 cut(s)	1273
BsuI	GTATCC	1 cut(s)	912
BsuRI	GGCC	3 cut(s)	823, 951, 971
BsuTUI	ATCGAT	1 cut(s)	1273
BtgZI	GCGATG	2 cut(s)	984, 1362
BtsCI	GGATG	7 cut(s)	310, 685, 703, 1399, 1651, 1714, 2386
BtsI	GCAGTG	1 cut(s)	1512
BtsIMutI	CAGTG	1 cut(s)	1512
BveI	ACCTGC	2 cut(s)	349, 1958
Cac8I	GCNNGC	1 cut(s)	2322
CaiI	CAGNNNCTG	2 cut(s)	1719, 2014
CciI	TCATGA	3 cut(s)	567, 1009, 1333
CfoI	GCGC	3 cut(s)	513, 1005, 1550
Cfr10I	RCCGGY	2 cut(s)	1484, 2320
Cfr13I	GGNCC	4 cut(s)	338, 822, 949, 1180
ClaI	ATCGAT	1 cut(s)	1273
Csp6I	GTAC	2 cut(s)	1343, 2173
CspAI	ACCGGT	1 cut(s)	1484
CviQI	GTAC	2 cut(s)	1343, 2173
DdeI	CTNAG	9 cut(s)	713, 833, 1258, 1479, 1822, 1925, 1974, 2085, 2102
DpnI	GATC	6 cut(s)	392, 814, 1228, 1898, 1907, 2052
DpnII	GATC	6 cut(s)	390, 812, 1226, 1896, 1905, 2050
DraI	TTTAAA	2 cut(s)	1599, 2392
DrdI	GACNNNNNNGTC	1 cut(s)	1178
DseDI	GACNNNNNNGTC	1 cut(s)	1178
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
EciI	GGCGGA	1 cut(s)	1382
Eco31I	GGTCTC	1 cut(s)	41
Eco32I	GATATC	1 cut(s)	2184
Eco47I	GGWCC	2 cut(s)	338, 1180
Eco47III	AGCGCT	1 cut(s)	512
Eco57I	CTGAAG	3 cut(s)	1421, 1558, 1682
Eco88I	CYCGRG	2 cut(s)	127, 1934
EcoO109I	RGGNCCY	1 cut(s)	949
EcoRV	GATATC	1 cut(s)	2184
EcoT22I	ATGCAT	1 cut(s)	1381
Esp3I	CGTCTC	1 cut(s)	603
FalI	AAGNNNNNCTT	2 cut(s)	1109, 1141
FauI	CCCGC	2 cut(s)	1677, 1873
FblI	GTMKAC	2 cut(s)	1432, 1472
Fnu4HI	GCNGC	7 cut(s)	29, 58, 854, 1239, 1408, 2009, 2090
FokI	GGATG	7 cut(s)	317, 692, 710, 1406, 1638, 1721, 2393
Fsp4HI	GCNGC	7 cut(s)	29, 58, 854, 1239, 1408, 2009, 2090
FspBI	CTAG	9 cut(s)	107, 327, 428, 600, 911, 959, 1283, 1536, 1590
GlaI	GCGC	3 cut(s)	512, 1004, 1549
GluI	GCNGC	7 cut(s)	29, 58, 854, 1239, 1408, 2009, 2090
HaeII	RGCGCY	1 cut(s)	514
HaeIII	GGCC	3 cut(s)	823, 951, 971
HapII	CCGG	8 cut(s)	204, 229, 1148, 1391, 1485, 2121, 2321, 2354
HhaI	GCGC	3 cut(s)	513, 1005, 1550
Hin6I	GCGC	3 cut(s)	511, 1003, 1548
HinP1I	GCGC	3 cut(s)	511, 1003, 1548
HincII	GTYRAC	2 cut(s)	119, 1294
HindII	GTYRAC	2 cut(s)	119, 1294
HindIII	AAGCTT	3 cut(s)	7, 1685, 2063
HinfI	GANTC	5 cut(s)	286, 1532, 1857, 2104, 2270
HpaII	CCGG	8 cut(s)	204, 229, 1148, 1391, 1485, 2121, 2321, 2354
HphI	GGTGA	8 cut(s)	116, 389, 632, 902, 1366, 1499, 2030, 2050
Hpy166II	GTNNAC	9 cut(s)	119, 455, 995, 1294, 1433, 1473, 1495, 1508, 1799
Hpy8I	GTNNAC	9 cut(s)	119, 455, 995, 1294, 1433, 1473, 1495, 1508, 1799
Hpy99I	CGWCG	1 cut(s)	265
HpyCH4III	ACNGT	2 cut(s)	52, 1721
HpyCH4IV	ACGT	1 cut(s)	260
HpyF10VI	GCNNNNNNNGC	7 cut(s)	968, 1131, 1238, 1416, 1684, 1899, 2098
HpyF3I	CTNAG	9 cut(s)	713, 833, 1258, 1479, 1822, 1925, 1974, 2085, 2102
HpySE526I	ACGT	1 cut(s)	260
HspAI	GCGC	3 cut(s)	511, 1003, 1548
Kpn2I	TCCGGA	1 cut(s)	2353
KpnI	GGTACC	1 cut(s)	2176
KroI	GCCGGC	1 cut(s)	2320
KroNI	GCCGGC	1 cut(s)	2322
Kzo9I	GATC	6 cut(s)	390, 812, 1226, 1896, 1905, 2050
LguI	GCTCTTC	1 cut(s)	203
LmnI	GCTCC	6 cut(s)	295, 333, 508, 690, 1958, 2097
Lsp1109I	GCAGC	5 cut(s)	69, 840, 1250, 2020, 2101
LweI	GCATC	9 cut(s)	69, 177, 295, 370, 586, 1167, 1366, 1660, 2020
MaeI	CTAG	9 cut(s)	107, 327, 428, 600, 911, 959, 1283, 1536, 1590
MaeII	ACGT	1 cut(s)	260
MaeIII	GTNAC	7 cut(s)	239, 700, 1091, 1137, 1753, 2036, 2056
MalI	GATC	6 cut(s)	392, 814, 1228, 1898, 1907, 2052
MbiI	CCGCTC	2 cut(s)	28, 336
MboI	GATC	6 cut(s)	390, 812, 1226, 1896, 1905, 2050
MfeI	CAATTG	3 cut(s)	1085, 1233, 1789
MlyI	GAGTC	2 cut(s)	1541, 2113
MmeI	TCCRAC	4 cut(s)	901, 955, 2247, 2287
Mph1103I	ATGCAT	1 cut(s)	1381
MroI	TCCGGA	1 cut(s)	2353
MroNI	GCCGGC	1 cut(s)	2320
MroXI	GAANNNNTTC	1 cut(s)	1831
MslI	CAYNNNNRTG	3 cut(s)	1038, 2043, 2046
MspCI	CTTAAG	1 cut(s)	1639
MspI	CCGG	8 cut(s)	204, 229, 1148, 1391, 1485, 2121, 2321, 2354
MspR9I	CCNGG	3 cut(s)	205, 1148, 2121
MunI	CAATTG	3 cut(s)	1085, 1233, 1789
MvnI	CGCG	3 cut(s)	1003, 1347, 1548
MwoI	GCNNNNNNNGC	7 cut(s)	968, 1131, 1238, 1416, 1684, 1899, 2098
NaeI	GCCGGC	1 cut(s)	2322
NciI	CCSGG	3 cut(s)	205, 1148, 2121
NdeII	GATC	6 cut(s)	390, 812, 1226, 1896, 1905, 2050
NgoMIV	GCCGGC	1 cut(s)	2320
NlaIV	GGNNCC	2 cut(s)	297, 2174
NmuCI	GTSAC	4 cut(s)	1137, 1753, 2036, 2056
NsiI	ATGCAT	1 cut(s)	1381
NspI	RCATGY	2 cut(s)	23, 1326
NspV	TTCGAA	2 cut(s)	179, 516
PagI	TCATGA	3 cut(s)	567, 1009, 1333
PciI	ACATGT	1 cut(s)	1322
PciSI	GCTCTTC	1 cut(s)	203
PdiI	GCCGGC	1 cut(s)	2322
PdmI	GAANNNNTTC	1 cut(s)	1831
PfeI	GAWTC	3 cut(s)	286, 1857, 2270
PfoI	TCCNGGA	1 cut(s)	2119
PinAI	ACCGGT	1 cut(s)	1484
PkrI	GCNGC	7 cut(s)	30, 59, 855, 1240, 1409, 2010, 2091
PleI	GAGTC	2 cut(s)	1540, 2112
PpsI	GAGTC	2 cut(s)	1540, 2112
PscI	ACATGT	1 cut(s)	1322
PshBI	ATTAAT	1 cut(s)	720
PspN4I	GGNNCC	2 cut(s)	297, 2174
PspPI	GGNCC	4 cut(s)	338, 822, 949, 1180
PstI	CTGCAG	1 cut(s)	2010
PstNI	CAGNNNCTG	2 cut(s)	1719, 2014
RsaI	GTAC	2 cut(s)	1344, 2174
RsaNI	GTAC	2 cut(s)	1343, 2173
RseI	CAYNNNNRTG	3 cut(s)	1038, 2043, 2046
SapI	GCTCTTC	1 cut(s)	203
SatI	GCNGC	7 cut(s)	29, 58, 854, 1239, 1408, 2009, 2090
Sau3AI	GATC	6 cut(s)	390, 812, 1226, 1896, 1905, 2050
Sau96I	GGNCC	4 cut(s)	338, 822, 949, 1180
SchI	GAGTC	2 cut(s)	1541, 2113
ScrFI	CCNGG	3 cut(s)	205, 1148, 2121
SfaNI	GCATC	9 cut(s)	69, 177, 295, 370, 586, 1167, 1366, 1660, 2020
SfcI	CTRYAG	1 cut(s)	2006
SfuI	TTCGAA	2 cut(s)	179, 516
SinI	GGWCC	2 cut(s)	338, 1180
SmiMI	CAYNNNNRTG	3 cut(s)	1038, 2043, 2046
SmlI	CTYRAG	3 cut(s)	32, 1639, 2198
SmoI	CTYRAG	3 cut(s)	32, 1639, 2198
SsiI	CCGC	8 cut(s)	28, 336, 878, 1367, 1408, 1670, 1794, 1866
SspMI	CTAG	9 cut(s)	107, 327, 428, 600, 911, 959, 1283, 1536, 1590
StyD4I	CCNGG	3 cut(s)	203, 1146, 2119
TaaI	ACNGT	2 cut(s)	52, 1721
TaiI	ACGT	1 cut(s)	263
TaqI	TCGA	9 cut(s)	149, 179, 516, 552, 1273, 1680, 1921, 2031, 2180
TauI	GCSGC	2 cut(s)	31, 1410
TfiI	GAWTC	3 cut(s)	286, 1857, 2270
TscAI	CASTG	1 cut(s)	1519
TseFI	GTSAC	4 cut(s)	1137, 1753, 2036, 2056
TseI	GCWGC	5 cut(s)	57, 853, 1238, 2008, 2089
Tsp45I	GTSAC	4 cut(s)	1137, 1753, 2036, 2056
TspDTI	ATGAA	9 cut(s)	105, 151, 570, 657, 738, 1113, 1322, 2222, 2226
TspGWI	ACGGA	1 cut(s)	598
TspRI	CASTG	1 cut(s)	1519
Vha464I	CTTAAG	1 cut(s)	1639
VpaK11BI	GGWCC	2 cut(s)	338, 1180
VspI	ATTAAT	1 cut(s)	720
XapI	RAATTY	6 cut(s)	183, 525, 548, 1329, 1523, 1912
XbaI	TCTAGA	1 cut(s)	1535
XceI	RCATGY	2 cut(s)	23, 1326
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1174, 1190
XmiI	GTMKAC	2 cut(s)	1432, 1472
XmnI	GAANNNNTTC	1 cut(s)	1831
XspI	CTAG	9 cut(s)	107, 327, 428, 600, 911, 959, 1283, 1536, 1590
Zsp2I	ATGCAT	1 cut(s)	1381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.