Rroxscaffold_5G00386590

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
65450536 .. 65453090
2555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00386590.1

Sequence Viewer

Length: 420 bp
ATGAGAGTGAATGAAGAAAGATCAAACTGGCCCAAAAGCCTCAACAAGGATGATAGTTGGCTTCCGTTTAGAAATGTTGCTTTTGCAGCTAGTGGAGATGAGTGTATGCATTTAAAACTAGAAGATGTTGGAAAAGAGATTGTTGAAAAGTATAAGAGTCTTCCATTAGCAATCAAGGCAGTTGGAGGAATAATGTGGTGCAAATCATCACGCTTTAATGAATGGATGCGAATTGCTAATCATTTTTGTAATGAGCTAGCAAAAAATGATAACTTAATTATCGCTTATCTACAGCTGAGTTATGATGAACTTTCATCCTATCGAAGTCATGCTTCCTTTAGTTCGCGTCCTAACTCCCACCAGTTTGTAGGCAGCAGGTTTGAAGGACCTTCTAGTTCGTGCGCTGCGGTGGGGGATTAG

Protein Analysis

139

Amino Acids

15.77

Weight (kDa)

6.9

Isoelectric Point (pI)

51.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000540)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50950 AT3G50950
fragaria_vesca FvH4_1g12710 FvH4_1g12710 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820
malus_domestica MD02G1141100.v1.1 MD10G1333100.v1.1
prunus_persica Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.6G150700_v2.0.a1 Prupe.7G160100_v2.0.a1 Prupe.7G160100_v2.0.a1
pyrus_communis pycom02g11110 pycom10g28240 pycom10g28340 pycom10g28360 pycom10g28450
rosa_chinensis RchiOBHm_Chr2g0100711 RchiOBHm_Chr3g0485861 RchiOBHm_Chr4g0391451 RchiOBHm_Chr4g0391591 RchiOBHm_Chr4g0391601 RchiOBHm_Chr4g0391681 RchiOBHm_Chr5g0001141 RchiOBHm_Chr5g0001221
rosa_laevigata RLG00000017001
rosa_multiflora Rmu_co8260007.1_g000001 Rmu_co8260103.1_g000001 Rmu_co8519155.1_g000001 Rmu_sc0000060.1_g000050 Rmu_sc0000255.1_g000036 Rmu_sc0001174.1_g000023 Rmu_sc0001174.1_g000025 Rmu_sc0001659.1_g000009 Rmu_sc0001706.1_g000009 Rmu_sc0001706.1_g000024 Rmu_sc0001706.1_g000035 Rmu_sc0004189.1_g000018 Rmu_sc0004189.1_g000030 Rmu_sc0004862.1_g000002 Rmu_sc0004876.1_g000038 Rmu_sc0023741.1_g000004
rosa_roxburghii Rroxscaffold_1G00075100 Rroxscaffold_1G00075160 Rroxscaffold_1G00075210 Rroxscaffold_5G00337160 Rroxscaffold_5G00386590 Rroxscaffold_6G00396300
rosa_rugosa Rorug03G0336200 Rorug03G0336300 Rorug04G0389400
rosa_samantha Rh2AG140400 Rh2BG144100 Rh2CG145400 Rh2DG144900 Rh3AG271200 Rh4AG038000 Rh4AG038700 Rh4BG032000 Rh4BG032800 Rh4CG041100 Rh4CG041300 Rh4DG035500 Rh4DG035600 Rh5AG008800 Rh5AG009100 Rh5BG010900 Rh5BG011500 Rh5BG011600 Rh5BG012000 Rh5CG009400 Rh5CG010000 Rh5DG009800
rosa_wichuraiana Rw2G010940 Rw4G002950 Rw4G002990 Rw4G003000 Rw5G000880 Rw5G000950 Rw5G000960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 366
AccII CGCG 1 cut(s) 346
AciI CCGC 1 cut(s) 407
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 2 cut(s) 146, 383
AluBI AGCT 3 cut(s) 89, 256, 295
AluI AGCT 3 cut(s) 89, 256, 295
AoxI GGCC 1 cut(s) 29
ApeKI GCWGC 3 cut(s) 86, 372, 404
AspLEI GCGC 1 cut(s) 404
AspS9I GGNCC 2 cut(s) 30, 386
AsuNHI GCTAGC 1 cut(s) 256
AvaII GGWCC 1 cut(s) 386
BbsI GAAGAC 1 cut(s) 152
BbvI GCAGC 3 cut(s) 98, 384, 391
BfaI CTAG 4 cut(s) 90, 119, 257, 393
BfmI CTRYAG 1 cut(s) 290
BfuAI ACCTGC 1 cut(s) 366
BisI GCNGC 3 cut(s) 87, 373, 405
BlsI GCNGC 3 cut(s) 88, 374, 406
Bme18I GGWCC 1 cut(s) 386
BmgT120I GGNCC 2 cut(s) 30, 386
BmsI GCATC 1 cut(s) 216
BmtI GCTAGC 1 cut(s) 260
BpiI GAAGAC 1 cut(s) 152
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse1I ACTGG 2 cut(s) 32, 361
BseGI GGATG 3 cut(s) 55, 231, 314
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMII CTCAG 1 cut(s) 287
BseNI ACTGG 2 cut(s) 32, 361
BseXI GCAGC 3 cut(s) 98, 384, 391
Bsh1236I CGCG 1 cut(s) 346
BshFI GGCC 1 cut(s) 31
BslI CCNNNNNNNGG 1 cut(s) 46
BsnI GGCC 1 cut(s) 31
Bsp143I GATC 1 cut(s) 20
BspACI CCGC 1 cut(s) 407
BspANI GGCC 1 cut(s) 31
BspCNI CTCAG 1 cut(s) 288
BspFNI CGCG 1 cut(s) 346
BspMI ACCTGC 1 cut(s) 366
BspOI GCTAGC 1 cut(s) 260
BsrI ACTGG 2 cut(s) 32, 361
BssMI GATC 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 1 cut(s) 296
BstENI CCTNNNNNAGG 1 cut(s) 44
BstF5I GGATG 3 cut(s) 55, 231, 314
BstFNI CGCG 1 cut(s) 346
BstHHI GCGC 1 cut(s) 404
BstKTI GATC 1 cut(s) 23
BstMBI GATC 1 cut(s) 20
BstMWI GCNNNNNNNGC 2 cut(s) 86, 176
BstSFI CTRYAG 1 cut(s) 290
BstUI CGCG 1 cut(s) 346
BstV1I GCAGC 3 cut(s) 98, 384, 391
BstV2I GAAGAC 1 cut(s) 152
BsuRI GGCC 1 cut(s) 31
BtsCI GGATG 3 cut(s) 55, 231, 314
BveI ACCTGC 1 cut(s) 366
Cac8I GCNNGC 1 cut(s) 258
CfoI GCGC 1 cut(s) 404
Cfr13I GGNCC 2 cut(s) 30, 386
CseI GACGC 1 cut(s) 335
CviAII CATG 1 cut(s) 329
CviJI RGCY 6 cut(s) 31, 39, 61, 89, 256, 295
CviKI_1 RGCY 6 cut(s) 31, 39, 61, 89, 256, 295
DdeI CTNAG 1 cut(s) 296
DpnI GATC 1 cut(s) 22
DpnII GATC 1 cut(s) 20
DraI TTTAAA 1 cut(s) 114
Eco47I GGWCC 1 cut(s) 386
EcoNI CCTNNNNNAGG 1 cut(s) 44
EcoO109I RGGNCCY 1 cut(s) 386
EcoT22I ATGCAT 1 cut(s) 111
FaeI CATG 1 cut(s) 332
FaiI YATR 4 cut(s) 107, 153, 303, 330
FalI AAGNNNNNCTT 2 cut(s) 316, 348
FatI CATG 1 cut(s) 328
Fnu4HI GCNGC 3 cut(s) 87, 373, 405
FokI GGATG 3 cut(s) 62, 238, 301
Fsp4HI GCNGC 3 cut(s) 87, 373, 405
FspBI CTAG 4 cut(s) 90, 119, 257, 393
GlaI GCGC 1 cut(s) 403
GluI GCNGC 3 cut(s) 87, 373, 405
HaeIII GGCC 1 cut(s) 31
HgaI GACGC 1 cut(s) 335
HhaI GCGC 1 cut(s) 404
Hin1II CATG 1 cut(s) 332
Hin6I GCGC 1 cut(s) 402
HinP1I GCGC 1 cut(s) 402
HinfI GANTC 1 cut(s) 157
HpyAV CCTTC 2 cut(s) 377, 399
HpyCH4V TGCA 3 cut(s) 86, 109, 201
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 176
HpyF3I CTNAG 1 cut(s) 296
Hsp92II CATG 1 cut(s) 332
HspAI GCGC 1 cut(s) 402
Kzo9I GATC 1 cut(s) 20
LpnPI CCDG 3 cut(s) 13, 361, 374
Lsp1109I GCAGC 3 cut(s) 98, 384, 391
LweI GCATC 1 cut(s) 216
MaeI CTAG 4 cut(s) 90, 119, 257, 393
MalI GATC 1 cut(s) 22
MboI GATC 1 cut(s) 20
MboII GAAGA 3 cut(s) 26, 134, 152
MluCI AATT 2 cut(s) 231, 276
MlyI GAGTC 1 cut(s) 166
MmeI TCCRAC 2 cut(s) 109, 163
MnlI CCTC 2 cut(s) 50, 179
Mph1103I ATGCAT 1 cut(s) 111
MseI TTAA 3 cut(s) 113, 216, 275
MspA1I CMGCKG 1 cut(s) 295
MvnI CGCG 1 cut(s) 346
MwoI GCNNNNNNNGC 2 cut(s) 86, 176
NdeII GATC 1 cut(s) 20
NheI GCTAGC 1 cut(s) 256
NlaIII CATG 1 cut(s) 332
NsiI ATGCAT 1 cut(s) 111
PkrI GCNGC 3 cut(s) 88, 374, 406
PleI GAGTC 1 cut(s) 165
PpsI GAGTC 1 cut(s) 165
PpuMI RGGWCCY 1 cut(s) 386
Psp5II RGGWCCY 1 cut(s) 386
PspPI GGNCC 2 cut(s) 30, 386
PspPPI RGGWCCY 1 cut(s) 386
PvuII CAGCTG 1 cut(s) 295
SaqAI TTAA 3 cut(s) 113, 216, 275
SatI GCNGC 3 cut(s) 87, 373, 405
Sau3AI GATC 1 cut(s) 20
Sau96I GGNCC 2 cut(s) 30, 386
SchI GAGTC 1 cut(s) 166
SetI ASST 5 cut(s) 91, 258, 297, 380, 391
SfaNI GCATC 1 cut(s) 216
SfcI CTRYAG 1 cut(s) 290
SinI GGWCC 1 cut(s) 386
Sse9I AATT 2 cut(s) 231, 276
SsiI CCGC 1 cut(s) 407
SspMI CTAG 4 cut(s) 90, 119, 257, 393
TaqI TCGA 1 cut(s) 322
TasI AATT 2 cut(s) 231, 276
Tru1I TTAA 3 cut(s) 113, 216, 275
Tru9I TTAA 3 cut(s) 113, 216, 275
TseI GCWGC 3 cut(s) 86, 372, 404
TspDTI ATGAA 4 cut(s) 27, 234, 303, 321
TspGWI ACGGA 1 cut(s) 54
VpaK11BI GGWCC 1 cut(s) 386
XagI CCTNNNNNAGG 1 cut(s) 44
XspI CTAG 4 cut(s) 90, 119, 257, 393
Zsp2I ATGCAT 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.