Rw4G002950

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
5834707 .. 5835894
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G002950.1

Sequence Viewer

Length: 1188 bp
ATGTCGTTAATAGTGGGGGCTATGGTCCAGACTCTAACGGAGCATGTGTTCACAGCTCTAATGAACCAGGCTGAATTTGCACTTGACTTCAGCGGCCAGTTTGAGCAGTTGAAGACGGGGCTTGATCTCACCAAGGCGTTACTTGCAGACACGGAGAGTCTCAACCACAAGAACAACATTGTCAAGGCAGCATTATTTGAGCTGAGAGAAGTTATCTACAAAGCCGACGATGTACTCACTGCAGATTGCTTGGTTAGAGACGAATACAGAAAGGATGGATCTTGTTCCGGCTCCTTGTTTCACGATCCATTCTTCCTGCATCGTACGGGAAAGAAATTGAAAGACATCAATTTGCGTATGAAGGAGATAGAGCAGACCTTGGGCAAGTTTTTGAGGGCTCCTGATAACATCCATGGAGAAGATGCATACCAAGTTAGGGTGATGGTTTCACAGGACTGGAATCCAACTGAGATAATTGGGTTGGATAGCGATGTGGAGAAGATTAAGGGTTGGCTTTTCGACACTAGCAAGGTACTTTCCCACGTAGGCATTGTGGGAATGGGAGGCTTGGGGAAAACCACCATTGCTCAAAAGATATTTCATGATCTAGAAGTAGTAGACCACTTTCACAAGCTGATATGGGTGTGTGTTTCACAATCATTCAGTGCTGATCGGATTATGAGGAGCATACTAGAAGGTCTAGGAGAAAATGTCTCCGGAGCTGGTGTTACTCAGATTTTGAGCAGAATTCAGCAAGTACTTGAAGATAAGAGTTGTTTGATTGTCATGGATGATGTGTGGAATCAAACAGATATTGATTGGTGGACCAACCTCTGCTCTGTTATACCCAAACAACGCAGCTGCATCATCGTTACAACTAGAAATGAAGAAGCTGTAATTGGTATGGGAGTTGAAAGTTCACGAATCCACCGTCCCAAAACTCTTAATGTTGAGGAAAGCTGGCGCTTGTTCTCCAAGTTTGCATTTCCTACAAGCAAGGGATTGTGCCAGGAAGATAGGCTTGAGAAATTAGGAAAAGAACTCTTGAAGAAGTGTGGTGGACTCCCACTCGCAATCAAGACTATAGGATCCTTGTTGGCATCAAAGGTCGACTCCCCTTCATGTCATTGGGGAGACACCATCTTGGTGGTGGTGGTGGTGGTATTCGATCATGCCCAGGGGATGTAA

Protein Analysis

395

Amino Acids

44.18

Weight (kDa)

5.87

Isoelectric Point (pI)

32.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 8 - 88 8.7e-11 Rx N-terminal domain
NB-ARC PF00931 163 - 332 1.9e-40 NB-ARC domain
AAA_22 PF13401 184 - 266 1.3e-06 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000540)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50950 AT3G50950
fragaria_vesca FvH4_1g12710 FvH4_1g12710 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820
malus_domestica MD02G1141100.v1.1 MD10G1333100.v1.1
prunus_persica Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.6G150700_v2.0.a1 Prupe.7G160100_v2.0.a1 Prupe.7G160100_v2.0.a1
pyrus_communis pycom02g11110 pycom10g28240 pycom10g28340 pycom10g28360 pycom10g28450
rosa_chinensis RchiOBHm_Chr2g0100711 RchiOBHm_Chr3g0485861 RchiOBHm_Chr4g0391451 RchiOBHm_Chr4g0391591 RchiOBHm_Chr4g0391601 RchiOBHm_Chr4g0391681 RchiOBHm_Chr5g0001141 RchiOBHm_Chr5g0001221
rosa_laevigata RLG00000017001
rosa_multiflora Rmu_co8260007.1_g000001 Rmu_co8260103.1_g000001 Rmu_co8519155.1_g000001 Rmu_sc0000060.1_g000050 Rmu_sc0000255.1_g000036 Rmu_sc0001174.1_g000023 Rmu_sc0001174.1_g000025 Rmu_sc0001659.1_g000009 Rmu_sc0001706.1_g000009 Rmu_sc0001706.1_g000024 Rmu_sc0001706.1_g000035 Rmu_sc0004189.1_g000018 Rmu_sc0004189.1_g000030 Rmu_sc0004862.1_g000002 Rmu_sc0004876.1_g000038 Rmu_sc0023741.1_g000004
rosa_roxburghii Rroxscaffold_1G00075100 Rroxscaffold_1G00075160 Rroxscaffold_1G00075210 Rroxscaffold_5G00337160 Rroxscaffold_5G00386590 Rroxscaffold_6G00396300
rosa_rugosa Rorug03G0336200 Rorug03G0336300 Rorug04G0389400
rosa_samantha Rh2AG140400 Rh2BG144100 Rh2CG145400 Rh2DG144900 Rh3AG271200 Rh4AG038000 Rh4AG038700 Rh4BG032000 Rh4BG032800 Rh4CG041100 Rh4CG041300 Rh4DG035500 Rh4DG035600 Rh5AG008800 Rh5AG009100 Rh5BG010900 Rh5BG011500 Rh5BG011600 Rh5BG012000 Rh5CG009400 Rh5CG010000 Rh5DG009800
rosa_wichuraiana Rw2G010940 Rw4G002950 Rw4G002990 Rw4G003000 Rw5G000880 Rw5G000950 Rw5G000960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 618, 1110
AccIII TCCGGA 1 cut(s) 716
AciI CCGC 1 cut(s) 93
AclWI GGATC 4 cut(s) 286, 299, 1083, 1096
AcoI YGGCCR 1 cut(s) 94
AcsI RAATTY 2 cut(s) 74, 747
AcuI CTGAAG 1 cut(s) 73
AfaI GTAC 4 cut(s) 234, 325, 534, 759
AfiI CCNNNNNNNGG 1 cut(s) 436
AgsI TTSAA 5 cut(s) 112, 340, 764, 914, 1048
AjnI CCWGG 3 cut(s) 66, 1008, 1176
AjuI GAANNNNNNNTTGG 2 cut(s) 882, 914
AloI GAACNNNNNNTCC 2 cut(s) 32, 64
AluBI AGCT 7 cut(s) 56, 202, 634, 722, 861, 893, 960
AluI AGCT 7 cut(s) 56, 202, 634, 722, 861, 893, 960
Alw26I GTCTC 4 cut(s) 164, 252, 718, 1128
AlwI GGATC 4 cut(s) 286, 299, 1083, 1096
Aor13HI TCCGGA 1 cut(s) 716
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 3 cut(s) 188, 858, 861
ApoI RAATTY 2 cut(s) 74, 747
ArsI GACNNNNNNTTYG 2 cut(s) 916, 948
AspLEI GCGC 1 cut(s) 966
AspS9I GGNCC 2 cut(s) 25, 825
AsuHPI GGTGA 2 cut(s) 121, 451
AvaII GGWCC 2 cut(s) 25, 825
BamHI GGATCC 1 cut(s) 1088
BanII GRGCYC 1 cut(s) 400
BbsI GAAGAC 1 cut(s) 119
BbvI GCAGC 3 cut(s) 200, 848, 870
BccI CCATC 3 cut(s) 269, 436, 1148
BciT130I CCWGG 3 cut(s) 68, 1010, 1178
BcoDI GTCTC 4 cut(s) 164, 252, 718, 1128
BfaI CTAG 5 cut(s) 525, 608, 692, 701, 879
BfmI CTRYAG 2 cut(s) 240, 1083
BfoI RGCGCY 1 cut(s) 967
BisI GCNGC 4 cut(s) 94, 189, 859, 862
BlsI GCNGC 4 cut(s) 95, 190, 860, 863
BmcAI AGTACT 1 cut(s) 759
Bme1390I CCNGG 3 cut(s) 68, 1010, 1178
Bme18I GGWCC 2 cut(s) 25, 825
BmgT120I GGNCC 2 cut(s) 25, 825
BmiI GGNNCC 3 cut(s) 292, 399, 1090
BmrFI CCNGG 3 cut(s) 68, 1010, 1178
BmsI GCATC 4 cut(s) 328, 412, 873, 1109
BpiI GAAGAC 1 cut(s) 119
BpuEI CTTGAG 1 cut(s) 1043
BsaAI YACGTR 1 cut(s) 544
BsaJI CCNNGG 5 cut(s) 132, 378, 412, 1176, 1177
BsaWI WCCGGW 1 cut(s) 716
BsaXI ACNNNNNCTCC 6 cut(s) 32, 62, 696, 711, 726, 741
Bsc4I CCNNNNNNNGG 1 cut(s) 436
Bse1I ACTGG 2 cut(s) 97, 461
Bse3DI GCAATG 1 cut(s) 582
BseAI TCCGGA 1 cut(s) 716
BseBI CCWGG 3 cut(s) 68, 1010, 1178
BseDI CCNNGG 5 cut(s) 132, 378, 412, 1176, 1177
BseGI GGATG 4 cut(s) 280, 408, 796, 1188
BseLI CCNNNNNNNGG 1 cut(s) 436
BseMI GCAATG 1 cut(s) 582
BseMII CTCAG 3 cut(s) 194, 459, 746
BseNI ACTGG 2 cut(s) 97, 461
BseRI GAGGAG 1 cut(s) 697
BseXI GCAGC 3 cut(s) 200, 848, 870
BshFI GGCC 1 cut(s) 96
BsiSI CCGG 2 cut(s) 288, 717
BsiWI CGTACG 1 cut(s) 323
BslFI GGGAC 1 cut(s) 918
BslI CCNNNNNNNGG 1 cut(s) 436
BsmAI GTCTC 4 cut(s) 164, 252, 718, 1128
BsmBI CGTCTC 1 cut(s) 252
BsmFI GGGAC 1 cut(s) 918
BsnI GGCC 1 cut(s) 96
Bsp1286I GDGCHC 1 cut(s) 400
Bsp13I TCCGGA 1 cut(s) 716
Bsp143I GATC 7 cut(s) 124, 278, 304, 604, 670, 1088, 1168
Bsp19I CCATGG 1 cut(s) 412
BspACI CCGC 1 cut(s) 93
BspANI GGCC 1 cut(s) 96
BspCNI CTCAG 3 cut(s) 195, 460, 745
BspEI TCCGGA 1 cut(s) 716
BspHI TCATGA 1 cut(s) 601
BspLI GGNNCC 3 cut(s) 292, 399, 1090
BspMAI CTGCAG 1 cut(s) 244
BspPI GGATC 4 cut(s) 286, 299, 1083, 1096
BsrDI GCAATG 1 cut(s) 582
BsrI ACTGG 2 cut(s) 97, 461
BssECI CCNNGG 5 cut(s) 132, 378, 412, 1176, 1177
BssMI GATC 7 cut(s) 124, 278, 304, 604, 670, 1088, 1168
BssT1I CCWWGG 3 cut(s) 132, 378, 412
Bst2UI CCWGG 3 cut(s) 68, 1010, 1178
Bst4CI ACNGT 1 cut(s) 932
BstBAI YACGTR 1 cut(s) 544
BstC8I GCNNGC 1 cut(s) 962
BstDEI CTNAG 3 cut(s) 203, 468, 732
BstDSI CCRYGG 1 cut(s) 412
BstF5I GGATG 4 cut(s) 280, 408, 796, 1188
BstH2I RGCGCY 1 cut(s) 967
BstHHI GCGC 1 cut(s) 966
BstKTI GATC 7 cut(s) 127, 281, 307, 607, 673, 1091, 1171
BstMAI GTCTC 4 cut(s) 164, 252, 718, 1128
BstMBI GATC 7 cut(s) 124, 278, 304, 604, 670, 1088, 1168
BstMWI GCNNNNNNNGC 2 cut(s) 77, 143
BstNI CCWGG 3 cut(s) 68, 1010, 1178
BstNSI RCATGY 1 cut(s) 47
BstSCI CCNGG 3 cut(s) 66, 1008, 1176
BstSFI CTRYAG 2 cut(s) 240, 1083
BstV1I GCAGC 3 cut(s) 200, 848, 870
BstV2I GAAGAC 1 cut(s) 119
BstX2I RGATCY 2 cut(s) 278, 1088
BstXI CCANNNNNNTGG 1 cut(s) 1147
BstYI RGATCY 2 cut(s) 278, 1088
BsuRI GGCC 1 cut(s) 96
BtgI CCRYGG 1 cut(s) 412
BtgZI GCGATG 1 cut(s) 504
BtsCI GGATG 4 cut(s) 280, 408, 796, 1188
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 2 cut(s) 237, 670
Cac8I GCNNGC 1 cut(s) 962
CciI TCATGA 1 cut(s) 601
CfoI GCGC 1 cut(s) 966
Cfr13I GGNCC 2 cut(s) 25, 825
Csp6I GTAC 4 cut(s) 233, 324, 533, 758
CviAII CATG 6 cut(s) 44, 413, 602, 787, 1122, 1172
CviQI GTAC 4 cut(s) 233, 324, 533, 758
DdeI CTNAG 3 cut(s) 203, 468, 732
DpnI GATC 7 cut(s) 126, 280, 306, 606, 672, 1090, 1170
DpnII GATC 7 cut(s) 124, 278, 304, 604, 670, 1088, 1168
EaeI YGGCCR 1 cut(s) 94
Eco130I CCWWGG 3 cut(s) 132, 378, 412
Eco24I GRGCYC 1 cut(s) 400
Eco47I GGWCC 2 cut(s) 25, 825
Eco57I CTGAAG 1 cut(s) 73
EcoRI GAATTC 1 cut(s) 747
EcoRII CCWGG 3 cut(s) 66, 1008, 1176
EcoT14I CCWWGG 3 cut(s) 132, 378, 412
EcoT22I ATGCAT 1 cut(s) 427
EcoT38I GRGCYC 1 cut(s) 400
ErhI CCWWGG 3 cut(s) 132, 378, 412
Esp3I CGTCTC 1 cut(s) 252
FaeI CATG 6 cut(s) 47, 416, 605, 790, 1125, 1175
FalI AAGNNNNNCTT 2 cut(s) 1005, 1037
FaqI GGGAC 1 cut(s) 918
FatI CATG 6 cut(s) 43, 412, 601, 786, 1121, 1171
FblI GTMKAC 2 cut(s) 618, 1110
Fnu4HI GCNGC 4 cut(s) 94, 189, 859, 862
FokI GGATG 3 cut(s) 287, 395, 803
FriOI GRGCYC 1 cut(s) 400
Fsp4HI GCNGC 4 cut(s) 94, 189, 859, 862
FspBI CTAG 5 cut(s) 525, 608, 692, 701, 879
GlaI GCGC 1 cut(s) 965
GluI GCNGC 4 cut(s) 94, 189, 859, 862
HaeII RGCGCY 1 cut(s) 967
HaeIII GGCC 1 cut(s) 96
HapII CCGG 2 cut(s) 288, 717
HhaI GCGC 1 cut(s) 966
Hin1II CATG 6 cut(s) 47, 416, 605, 790, 1125, 1175
Hin6I GCGC 1 cut(s) 964
HinP1I GCGC 1 cut(s) 964
HincII GTYRAC 1 cut(s) 1111
HindII GTYRAC 1 cut(s) 1111
HinfI GANTC 7 cut(s) 31, 157, 460, 802, 924, 1062, 1112
HpaII CCGG 2 cut(s) 288, 717
HphI GGTGA 2 cut(s) 121, 451
Hpy166II GTNNAC 6 cut(s) 51, 619, 825, 920, 1061, 1111
Hpy188I TCNGA 2 cut(s) 675, 735
Hpy188III TCNNGA 9 cut(s) 28, 302, 401, 602, 608, 717, 921, 1045, 1078
Hpy8I GTNNAC 6 cut(s) 51, 619, 825, 920, 1061, 1111
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 3 cut(s) 355, 689, 1128
HpyCH4III ACNGT 1 cut(s) 932
HpyCH4IV ACGT 1 cut(s) 543
HpyCH4V TGCA 7 cut(s) 80, 146, 242, 319, 425, 864, 983
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 143
HpyF3I CTNAG 3 cut(s) 203, 468, 732
HpySE526I ACGT 1 cut(s) 543
Hsp92II CATG 6 cut(s) 47, 416, 605, 790, 1125, 1175
HspAI GCGC 1 cut(s) 964
Kpn2I TCCGGA 1 cut(s) 716
Kzo9I GATC 7 cut(s) 124, 278, 304, 604, 670, 1088, 1168
LmnI GCTCC 5 cut(s) 40, 296, 403, 684, 719
Lsp1109I GCAGC 3 cut(s) 200, 848, 870
LweI GCATC 4 cut(s) 328, 412, 873, 1109
MaeI CTAG 5 cut(s) 525, 608, 692, 701, 879
MaeII ACGT 1 cut(s) 543
MaeIII GTNAC 3 cut(s) 138, 727, 871
MalI GATC 7 cut(s) 126, 280, 306, 606, 672, 1090, 1170
MboI GATC 7 cut(s) 124, 278, 304, 604, 670, 1088, 1168
MboII GAAGA 8 cut(s) 124, 304, 431, 511, 776, 899, 1025, 1060
MflI RGATCY 2 cut(s) 278, 1088
MhlI GDGCHC 1 cut(s) 400
MluCI AATT 7 cut(s) 74, 335, 349, 474, 747, 897, 1028
MlyI GAGTC 4 cut(s) 25, 166, 1056, 1106
MmeI TCCRAC 2 cut(s) 462, 488
MnlI CCTC 5 cut(s) 387, 557, 675, 842, 946
Mph1103I ATGCAT 1 cut(s) 427
MroI TCCGGA 1 cut(s) 716
MseI TTAA 3 cut(s) 8, 504, 945
MslI CAYNNNNRTG 1 cut(s) 1145
MspA1I CMGCKG 2 cut(s) 93, 861
MspI CCGG 2 cut(s) 288, 717
MspR9I CCNGG 3 cut(s) 68, 1010, 1178
MvaI CCWGG 3 cut(s) 68, 1010, 1178
MwoI GCNNNNNNNGC 2 cut(s) 77, 143
NcoI CCATGG 1 cut(s) 412
NdeII GATC 7 cut(s) 124, 278, 304, 604, 670, 1088, 1168
NlaIII CATG 6 cut(s) 47, 416, 605, 790, 1125, 1175
NlaIV GGNNCC 3 cut(s) 292, 399, 1090
NsiI ATGCAT 1 cut(s) 427
NspI RCATGY 1 cut(s) 47
PagI TCATGA 1 cut(s) 601
PasI CCCWGGG 1 cut(s) 1177
PcsI WCGNNNNNNNCGW 1 cut(s) 928
PfeI GAWTC 3 cut(s) 460, 802, 924
Pfl23II CGTACG 1 cut(s) 323
PkrI GCNGC 4 cut(s) 95, 190, 860, 863
PleI GAGTC 4 cut(s) 25, 165, 1056, 1106
PpsI GAGTC 4 cut(s) 25, 165, 1056, 1106
Ppu21I YACGTR 1 cut(s) 544
Psp6I CCWGG 3 cut(s) 66, 1008, 1176
PspGI CCWGG 3 cut(s) 66, 1008, 1176
PspLI CGTACG 1 cut(s) 323
PspN4I GGNNCC 3 cut(s) 292, 399, 1090
PspPI GGNCC 2 cut(s) 25, 825
PstI CTGCAG 1 cut(s) 244
PsuI RGATCY 2 cut(s) 278, 1088
PvuII CAGCTG 1 cut(s) 861
RsaI GTAC 4 cut(s) 234, 325, 534, 759
RsaNI GTAC 4 cut(s) 233, 324, 533, 758
RseI CAYNNNNRTG 1 cut(s) 1145
SalI GTCGAC 1 cut(s) 1109
SaqAI TTAA 3 cut(s) 8, 504, 945
SatI GCNGC 4 cut(s) 94, 189, 859, 862
Sau3AI GATC 7 cut(s) 124, 278, 304, 604, 670, 1088, 1168
Sau96I GGNCC 2 cut(s) 25, 825
ScaI AGTACT 1 cut(s) 759
SchI GAGTC 4 cut(s) 25, 166, 1056, 1106
ScrFI CCNGG 3 cut(s) 68, 1010, 1178
SduI GDGCHC 1 cut(s) 400
SfaNI GCATC 4 cut(s) 328, 412, 873, 1109
SfcI CTRYAG 2 cut(s) 240, 1083
SinI GGWCC 2 cut(s) 25, 825
SmiMI CAYNNNNRTG 1 cut(s) 1145
SmlI CTYRAG 1 cut(s) 1022
SmoI CTYRAG 1 cut(s) 1022
Sse9I AATT 7 cut(s) 74, 335, 349, 474, 747, 897, 1028
SsiI CCGC 1 cut(s) 93
SspMI CTAG 5 cut(s) 525, 608, 692, 701, 879
StyD4I CCNGG 3 cut(s) 66, 1008, 1176
StyI CCWWGG 3 cut(s) 132, 378, 412
TaaI ACNGT 1 cut(s) 932
TaiI ACGT 1 cut(s) 546
TaqI TCGA 3 cut(s) 519, 1110, 1167
TasI AATT 7 cut(s) 74, 335, 349, 474, 747, 897, 1028
TatI WGTACW 2 cut(s) 232, 757
TauI GCSGC 1 cut(s) 96
TfiI GAWTC 3 cut(s) 460, 802, 924
Tru1I TTAA 3 cut(s) 8, 504, 945
Tru9I TTAA 3 cut(s) 8, 504, 945
TscAI CASTG 2 cut(s) 244, 670
TseI GCWGC 3 cut(s) 188, 858, 861
TspDTI ATGAA 5 cut(s) 77, 374, 590, 900, 1110
TspGWI ACGGA 2 cut(s) 53, 167
TspRI CASTG 2 cut(s) 244, 670
VpaK11BI GGWCC 2 cut(s) 25, 825
XapI RAATTY 2 cut(s) 74, 747
XbaI TCTAGA 1 cut(s) 607
XceI RCATGY 1 cut(s) 47
XcmI CCANNNNNNNNNTGG 1 cut(s) 1147
XmiI GTMKAC 2 cut(s) 618, 1110
XspI CTAG 5 cut(s) 525, 608, 692, 701, 879
ZrmI AGTACT 1 cut(s) 759
Zsp2I ATGCAT 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.