Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000540

Physical Location & Seq

Genomic Coordinates Forward (+)

738310 .. 746408

Gene Structure 8099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G000950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2610 bp

ATGGAGACGCTGACTCCTATGGTTCAAGTTGTAGTGGACAAAGTATCTACGACAATGTTGAACAGAGCTCAAGTCATAGCAAAGTTTGGAGACGAGTTTGACCAGCTGAGGGAAGGGTTAGAAACTACAAGGGACCTACTCGCTGACTCGATGAATCTTCAGAGCAAGTATGACAAGGTCAAGGGTGCCGTGAGCCAACTAAGAGAAGTAATTGATGAAGCTGACGATGTATTGACAGATTGCCTGGTTCGAGACATATACAAGGAAAATAAGTCCTCCCTACGTTTCTGGTTTCATGATCCGGGATTCTCAAGTCGAGTGGGCAAGCAGTTGGTAGATATCAATTCGAAAATGGACATGGCACGTAGTATCTTGGGCAAACATTTGACTATTGCAAACTCTACAGCGCCTGATAGAACCCATCATGGTGAAAGCGATGCAAACCAGGGTGAAAGTGAAAGGGAATTCATGTCACGCAATTACGTCCCGCCTGTGACCTATGGATTGGATAAGGACATTAAAAGTTTGAAAGAGTGGATGTTTGGCAGTACCAACGGGAAACTAGACTTTGTGGGCATTGTGGGGATGGGGGGCTTGGGCAAAACTACCATTGCCAAGAAGGTCTTTACTGATACAGAAGTTATATCTCACTTTAACAAGATGATCTGGGTGTCTGTTTCACAGAACTTTAGTATGAGGCGGATTCTGAAGTGCATGCTGGAAAAGGCAAATCTGCAAGCAGCGGATGTTTCCGAATCTGATGATATGTTCACCAGCCTTAGACAAGGACTTAAAGATCAATCCTATCTCATTGTCATGGATGATGTGTGGCCTCATAAAAATTTAAATAGTTTTTGGGCCAATTTCTTTGACTCGCTACCAACAAAAGTTGATAAAAGCAGCTGCATCATAATTACTACAAGGGATCGAGACGTTGCAAGAGTCATGGTGCACCAAGACTCACAAATACTTGAGCCCCCTACCCTGAATGACAGGGACAGCTGGTCTTTGTTCAGCGGATTTGCATTTCGATCAACCAAGGGAGAATGCCCGGATGAGAGCTTTGAGAAGGAAGGACAGGCTATCGTGAAGAGATGTGGTGGGCTTCCACTGGCAATCAAGACATTAGGAGGTTATTTGGCCAAGGAGAGTCCTCCTTCTGAGTGGACCAAGACAAAAGAAAAATTTCATTCATTGACTACCGATGGAAAAACAGAATCACTTATGCTTTGTCTACAAGTGAGCTATGATGAACTTCCAAACGATATGAAGCAATGCCTATTGTGTCTCTCCGTTTATCCTGAAGACTTTGAGATACACGCTGATCAGCTAATTCACTGGTGGTTTGGAGAGGGCCTTATCCGGGGCAAGAAAGGCGACTCAAAAACAGCAGTAGAAGTGGGCTACGAAAATCTGGTAAAACTAGCCAATAGATGCCTATTGGAAGTCGTGGAGCGCCGAGGCTATGATGGAAGGATTATTAAGTTCAAAATACACGATATGGTACGGGAGTTAATAATCAGGATTGCAGAAAAAGAGAAATTTTGCAGCTTCAGCGAGGAATGTACGCAGATAGGGATTGAAGACTCTCGGTGGTTATGTCTCACTGAAGAGGTGGCAGCTGAGGTTAAGAAGCCATGGATCAAAAGAAAGTTAAAGATGAGGTCACTTTTACTGATGTCAAGCCCTTCTTTGGTTGACTTCAGCAAGAACTTTGTGTTGTTGGAGTCACTCAGGGTATTGGACTTGTCTTTCTCGAAGTTAGATGTGATTATTGTTGAAGATAGCAACACGGCCTCTTCAGGGATTTGTGTAGAGAAACTCTTCGACATGATCACTTCTCTGAAACGCCTAGCATGTCTAAACCTCAGTGGAGTTCAGAAACTATTAGAACTGCCATCTTCAATTGAGAAACTCCTTAACCTCCAGGTCTTGGTGTTGAATGGATGCAGAAATTTAGGCAAAATACACGCCAAAATCACAAGTTTGAAGAGGCTTGTTGTATTGGACATTGGAACATGTCCCCTCGAGCACCTGCCTCGGGACCTAGGGAGCCTCTCTTATCTTCAAGAACTCTCTGGATTTAAGGTGGTAAGTCGGGCTAAAACACTGGGTTGCACCCTTCTTGAGCTTGGAAAACTAAAGCAGCTAAGAGTTCTTCGAATTACAATAGGTGATGTGGCTGAAATCTCCGAAAAAGAAAAGAAGAGCCTATCAAGTCTCCAGAACCTCAAGGTTCTAGCTATTGATGCTGCAGGTACATGCAATCAAGAAAATCTGAAAATGATAGATGAGCTGGAGTTGCCTCGAAAGATAGAGGAGCTGTATCTCAGGAATTACCGCTCCCAAAAAATGCCAAACTGGTTTAGTCCCTTGTGGCTTCCTAAATTGCATTATCTTTCTATTGAGGATTGCGACGTTGAAAGCCTAAAGGACAACTGCTGTTGGAAAATTGAAGGTTTGTATTTAAAATTGTTAAATATGTTAGAGGTAGACTGGAATGACTTGAAGAGGGTTGTGCCAGCATTACGCTACATGGAGATTAGCAGATGTTCCAAATTGAAAAACTTTCCCATCGACGTTGTCAATCCAGGGGTTTGGAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0023052 GO:0042742 GO:0043207 GO:0043621 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

869

Amino Acids

98.83

Weight (kDa)

6.92

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	7 - 97	7.3e-09	Rx N-terminal domain
NB-ARC	PF00931	171 - 346	5.8e-37	NB-ARC domain
WHD_DRP	PF23559	432 - 506	4.9e-14	Disease resistance protein Winged helix domain
LRR_14	PF23598	570 - 803	1.1e-24	Leucine-rich repeat region
LRR_R13L1-DRL21	PF25019	710 - 811	1.2e-09	R13L1/DRL21 LRRs

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50950 AT3G50950
fragaria_vesca	FvH4_1g12710 FvH4_1g12710 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820
malus_domestica	MD02G1141100.v1.1 MD10G1333100.v1.1
prunus_persica	Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.6G150700_v2.0.a1 Prupe.7G160100_v2.0.a1 Prupe.7G160100_v2.0.a1
pyrus_communis	pycom02g11110 pycom10g28240 pycom10g28340 pycom10g28360 pycom10g28450
rosa_chinensis	RchiOBHm_Chr2g0100711 RchiOBHm_Chr3g0485861 RchiOBHm_Chr4g0391451 RchiOBHm_Chr4g0391591 RchiOBHm_Chr4g0391601 RchiOBHm_Chr4g0391681 RchiOBHm_Chr5g0001141 RchiOBHm_Chr5g0001221
rosa_laevigata	RLG00000017001
rosa_multiflora	Rmu_co8260007.1_g000001 Rmu_co8260103.1_g000001 Rmu_co8519155.1_g000001 Rmu_sc0000060.1_g000050 Rmu_sc0000255.1_g000036 Rmu_sc0001174.1_g000023 Rmu_sc0001174.1_g000025 Rmu_sc0001659.1_g000009 Rmu_sc0001706.1_g000009 Rmu_sc0001706.1_g000024 Rmu_sc0001706.1_g000035 Rmu_sc0004189.1_g000018 Rmu_sc0004189.1_g000030 Rmu_sc0004862.1_g000002 Rmu_sc0004876.1_g000038 Rmu_sc0023741.1_g000004
rosa_roxburghii	Rroxscaffold_1G00075100 Rroxscaffold_1G00075160 Rroxscaffold_1G00075210 Rroxscaffold_5G00337160 Rroxscaffold_5G00386590 Rroxscaffold_6G00396300
rosa_rugosa	Rorug03G0336200 Rorug03G0336300 Rorug04G0389400
rosa_samantha	Rh2AG140400 Rh2BG144100 Rh2CG145400 Rh2DG144900 Rh3AG271200 Rh4AG038000 Rh4AG038700 Rh4BG032000 Rh4BG032800 Rh4CG041100 Rh4CG041300 Rh4DG035500 Rh4DG035600 Rh5AG008800 Rh5AG009100 Rh5BG010900 Rh5BG011500 Rh5BG011600 Rh5BG012000 Rh5CG009400 Rh5CG010000 Rh5DG009800
rosa_wichuraiana	Rw2G010940 Rw4G002950 Rw4G002990 Rw4G003000 Rw5G000880 Rw5G000950 Rw5G000960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2043
Acc36I	ACCTGC	2 cut(s)	2043, 2246
AccB1I	GGYRCC	1 cut(s)	185
AccB7I	CCANNNNNTGG	1 cut(s)	1933
AccBSI	CCGCTC	1 cut(s)	2343
AccI	GTMKAC	2 cut(s)	1234, 2493
AciI	CCGC	5 cut(s)	488, 700, 743, 1017, 2341
AclWI	GGATC	3 cut(s)	293, 933, 1649
AcoI	YGGCCR	1 cut(s)	1140
AcsI	RAATTY	5 cut(s)	464, 841, 1184, 1541, 1954
AcuI	CTGAAG	7 cut(s)	143, 728, 1323, 1537, 1629, 1687, 1785
AfaI	GTAC	4 cut(s)	550, 1506, 1567, 2260
AfiI	CCNNNNNNNGG	6 cut(s)	109, 1363, 1693, 1803, 1933, 2041
AflIII	ACRYGT	1 cut(s)	2018
AhdI	GACNNNNNGTC	1 cut(s)	1003
AjnI	CCWGG	4 cut(s)	243, 444, 1926, 2590
Alw21I	GWGCWC	3 cut(s)	70, 954, 2034
Alw26I	GTCTC	6 cut(s)	84, 246, 924, 1292, 1607, 2225
Alw44I	GTGCAC	1 cut(s)	950
AlwI	GGATC	3 cut(s)	293, 933, 1649
AlwNI	CAGNNNCTG	1 cut(s)	410
Ama87I	CYCGRG	2 cut(s)	2027, 2040
AoxI	GGCC	5 cut(s)	830, 858, 1140, 1354, 1794
ApaLI	GTGCAC	1 cut(s)	950
ApeKI	GCWGC	7 cut(s)	740, 900, 903, 1548, 1619, 2146, 2252
ApoI	RAATTY	5 cut(s)	464, 841, 1184, 1541, 1954
Asp700I	GAANNNNTTC	2 cut(s)	1185, 1823
AspA2I	CCTAGG	1 cut(s)	2047
AspLEI	GCGC	2 cut(s)	409, 1458
AspS9I	GGNCC	5 cut(s)	133, 858, 1167, 1354, 2044
AsuC2I	CCSGG	3 cut(s)	303, 1052, 1364
AsuHPI	GGTGA	4 cut(s)	440, 461, 763, 2186
AsuII	TTCGAA	2 cut(s)	347, 2161
AvaI	CYCGRG	2 cut(s)	2027, 2040
AvaII	GGWCC	3 cut(s)	133, 1167, 2044
AvrII	CCTAGG	1 cut(s)	2047
BaeGI	GKGCMC	1 cut(s)	954
BaeI	ACNNNNGTAYC	4 cut(s)	624, 657, 1496, 1529
BalI	TGGCCA	1 cut(s)	1142
BanI	GGYRCC	1 cut(s)	185
BanII	GRGCYC	2 cut(s)	70, 978
BbsI	GAAGAC	2 cut(s)	1311, 1590
Bbv12I	GWGCWC	3 cut(s)	70, 954, 2034
BbvCI	CCTCAGC	2 cut(s)	107, 1623
BbvI	GCAGC	7 cut(s)	752, 890, 912, 1560, 1631, 2158, 2239
BccI	CCATC	6 cut(s)	429, 580, 1199, 1463, 1906, 2582
BceAI	ACGGC	2 cut(s)	173, 1809
BcgI	CGANNNNNNTGC	2 cut(s)	2021, 2055
BciT130I	CCWGG	4 cut(s)	245, 446, 1928, 2592
BclI	TGATCA	2 cut(s)	1324, 1833
BcnI	CCSGG	3 cut(s)	303, 1052, 1364
BcoDI	GTCTC	6 cut(s)	84, 246, 924, 1292, 1607, 2225
BfaI	CTAG	5 cut(s)	563, 1424, 1853, 2048, 2240
BfmI	CTRYAG	2 cut(s)	402, 2253
BfoI	RGCGCY	2 cut(s)	410, 1459
BfuAI	ACCTGC	2 cut(s)	2043, 2246
BisI	GCNGC	7 cut(s)	741, 901, 904, 1549, 1620, 2147, 2253
BlnI	CCTAGG	1 cut(s)	2047
BlsI	GCNGC	7 cut(s)	742, 902, 905, 1550, 1621, 2148, 2254
Bme1390I	CCNGG	7 cut(s)	245, 303, 446, 1052, 1364, 1928, 2592
Bme18I	GGWCC	3 cut(s)	133, 1167, 2044
BmeRI	GACNNNNNGTC	1 cut(s)	1003
BmeT110I	CYCGRG	2 cut(s)	2027, 2040
BmgT120I	GGNCC	5 cut(s)	133, 858, 1167, 1354, 2044
BmiI	GGNNCC	4 cut(s)	134, 187, 2045, 2054
BmrFI	CCNGG	7 cut(s)	245, 303, 446, 1052, 1364, 1928, 2592
BmrI	ACTGGG	1 cut(s)	2120
BmsI	GCATC	5 cut(s)	427, 915, 1424, 1937, 2239
BmuI	ACTGGG	1 cut(s)	2120
BpiI	GAAGAC	2 cut(s)	1311, 1590
BpmI	CTGGAG	3 cut(s)	1910, 2207, 2318
Bpu10I	CCTNAGC	2 cut(s)	107, 1623
Bpu14I	TTCGAA	2 cut(s)	347, 2161
BpuEI	CTTGAG	5 cut(s)	54, 295, 992, 2147, 2216
BpuMI	CCSGG	3 cut(s)	303, 1052, 1364
BsaAI	YACGTR	1 cut(s)	365
BsaJI	CCNNGG	9 cut(s)	445, 1038, 1143, 1363, 1459, 1637, 2039, 2047, 2591
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	6 cut(s)	109, 1363, 1693, 1803, 1933, 2041
Bse1I	ACTGG	5 cut(s)	1116, 1343, 2115, 2366, 2501
Bse3DI	GCAATG	2 cut(s)	609, 1280
BseBI	CCWGG	4 cut(s)	245, 446, 1928, 2592
BseDI	CCNNGG	9 cut(s)	445, 1038, 1143, 1363, 1459, 1637, 2039, 2047, 2591
BseGI	GGATG	6 cut(s)	543, 591, 751, 826, 1060, 1952
BseLI	CCNNNNNNNGG	6 cut(s)	109, 1363, 1693, 1803, 1933, 2041
BseMI	GCAATG	2 cut(s)	609, 1280
BseMII	CTCAG	6 cut(s)	98, 1152, 1614, 1747, 1882, 2344
BseNI	ACTGG	5 cut(s)	1116, 1343, 2115, 2366, 2501
BseRI	GAGGAG	1 cut(s)	2333
BseSI	GKGCMC	1 cut(s)	954
BseXI	GCAGC	7 cut(s)	752, 890, 912, 1560, 1631, 2158, 2239
BshFI	GGCC	5 cut(s)	832, 860, 1142, 1356, 1796
BshNI	GGYRCC	1 cut(s)	185
BsiHKAI	GWGCWC	3 cut(s)	70, 954, 2034
BsiHKCI	CYCGRG	2 cut(s)	2027, 2040
BsiSI	CCGG	3 cut(s)	302, 1052, 1363
BslFI	GGGAC	6 cut(s)	146, 470, 1010, 2007, 2057, 2355
BslI	CCNNNNNNNGG	6 cut(s)	109, 1363, 1693, 1803, 1933, 2041
BsmAI	GTCTC	6 cut(s)	84, 246, 924, 1292, 1607, 2225
BsmBI	CGTCTC	2 cut(s)	84, 924
BsmFI	GGGAC	6 cut(s)	146, 470, 1010, 2007, 2057, 2355
BsmI	GAATGC	1 cut(s)	1052
BsnI	GGCC	5 cut(s)	832, 860, 1142, 1356, 1796
BsoBI	CYCGRG	2 cut(s)	2027, 2040
Bsp119I	TTCGAA	2 cut(s)	347, 2161
Bsp1286I	GDGCHC	4 cut(s)	70, 954, 978, 2034
Bsp143I	GATC	8 cut(s)	298, 663, 796, 925, 1031, 1324, 1641, 1833
Bsp19I	CCATGG	1 cut(s)	1637
BspACI	CCGC	5 cut(s)	488, 700, 743, 1017, 2341
BspANI	GGCC	5 cut(s)	832, 860, 1142, 1356, 1796
BspCNI	CTCAG	6 cut(s)	99, 1153, 1615, 1746, 1881, 2343
BspHI	TCATGA	1 cut(s)	295
BspLI	GGNNCC	4 cut(s)	134, 187, 2045, 2054
BspMAI	CTGCAG	1 cut(s)	2257
BspMI	ACCTGC	2 cut(s)	2043, 2246
BspPI	GGATC	3 cut(s)	293, 933, 1649
BspQI	GCTCTTC	1 cut(s)	2201
BspT104I	TTCGAA	2 cut(s)	347, 2161
BspT107I	GGYRCC	1 cut(s)	185
BsrBI	CCGCTC	1 cut(s)	2343
BsrDI	GCAATG	2 cut(s)	609, 1280
BsrI	ACTGG	5 cut(s)	1116, 1343, 2115, 2366, 2501
BssECI	CCNNGG	9 cut(s)	445, 1038, 1143, 1363, 1459, 1637, 2039, 2047, 2591
BssMI	GATC	8 cut(s)	298, 663, 796, 925, 1031, 1324, 1641, 1833
BssT1I	CCWWGG	4 cut(s)	1038, 1143, 1637, 2047
Bst2UI	CCWGG	4 cut(s)	245, 446, 1928, 2592
Bst6I	CTCTTC	7 cut(s)	1085, 1605, 1804, 1829, 1985, 2201, 2504
BstBAI	YACGTR	1 cut(s)	365
BstBI	TTCGAA	2 cut(s)	347, 2161
BstC8I	GCNNGC	4 cut(s)	326, 716, 738, 2523
BstDEI	CTNAG	9 cut(s)	107, 200, 779, 1161, 1623, 1733, 1868, 2150, 2330
BstDSI	CCRYGG	1 cut(s)	1637
BstF5I	GGATG	6 cut(s)	543, 591, 751, 826, 1060, 1952
BstH2I	RGCGCY	2 cut(s)	410, 1459
BstHHI	GCGC	2 cut(s)	409, 1458
BstKTI	GATC	8 cut(s)	301, 666, 799, 928, 1034, 1327, 1644, 1836
BstMAI	GTCTC	6 cut(s)	84, 246, 924, 1292, 1607, 2225
BstMBI	GATC	8 cut(s)	298, 663, 796, 925, 1031, 1324, 1641, 1833
BstMWI	GCNNNNNNNGC	4 cut(s)	1374, 1554, 2249, 2302
BstNI	CCWGG	4 cut(s)	245, 446, 1928, 2592
BstNSI	RCATGY	4 cut(s)	718, 1860, 2022, 2265
BstSCI	CCNGG	7 cut(s)	243, 301, 444, 1050, 1362, 1926, 2590
BstSFI	CTRYAG	2 cut(s)	402, 2253
BstSLI	GKGCMC	1 cut(s)	954
BstV1I	GCAGC	7 cut(s)	752, 890, 912, 1560, 1631, 2158, 2239
BstV2I	GAAGAC	2 cut(s)	1311, 1590
BstXI	CCANNNNNNTGG	1 cut(s)	2598
BsuRI	GGCC	5 cut(s)	832, 860, 1142, 1356, 1796
BtgI	CCRYGG	1 cut(s)	1637
BtgZI	GCGATG	1 cut(s)	450
BtsCI	GGATG	6 cut(s)	543, 591, 751, 826, 1060, 1952
BtsIMutI	CAGTG	5 cut(s)	1109, 1336, 1605, 1876, 2108
BveI	ACCTGC	2 cut(s)	2043, 2246
Cac8I	GCNNGC	4 cut(s)	326, 716, 738, 2523
CaiI	CAGNNNCTG	1 cut(s)	410
CciI	TCATGA	1 cut(s)	295
CfoI	GCGC	2 cut(s)	409, 1458
Cfr13I	GGNCC	5 cut(s)	133, 858, 1167, 1354, 2044
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	4 cut(s)	549, 1505, 1566, 2259
CspCI	CAANNNNNGTGG	2 cut(s)	300, 335
CviQI	GTAC	4 cut(s)	549, 1505, 1566, 2259
DdeI	CTNAG	9 cut(s)	107, 200, 779, 1161, 1623, 1733, 1868, 2150, 2330
DpnI	GATC	8 cut(s)	300, 665, 798, 927, 1033, 1326, 1643, 1835
DpnII	GATC	8 cut(s)	298, 663, 796, 925, 1031, 1324, 1641, 1833
DraI	TTTAAA	2 cut(s)	846, 2469
DriI	GACNNNNNGTC	1 cut(s)	1003
EaeI	YGGCCR	1 cut(s)	1140
Eam1104I	CTCTTC	7 cut(s)	1085, 1605, 1804, 1829, 1985, 2201, 2504
Eam1105I	GACNNNNNGTC	1 cut(s)	1003
EarI	CTCTTC	7 cut(s)	1085, 1605, 1804, 1829, 1985, 2201, 2504
EciI	GGCGGA	1 cut(s)	715
Ecl136II	GAGCTC	1 cut(s)	68
Eco130I	CCWWGG	4 cut(s)	1038, 1143, 1637, 2047
Eco24I	GRGCYC	2 cut(s)	70, 978
Eco32I	GATATC	1 cut(s)	340
Eco47I	GGWCC	3 cut(s)	133, 1167, 2044
Eco53kI	GAGCTC	1 cut(s)	68
Eco57I	CTGAAG	7 cut(s)	143, 728, 1323, 1537, 1629, 1687, 1785
Eco88I	CYCGRG	2 cut(s)	2027, 2040
EcoICRI	GAGCTC	1 cut(s)	68
EcoO109I	RGGNCCY	3 cut(s)	133, 1354, 2044
EcoRI	GAATTC	1 cut(s)	464
EcoRII	CCWGG	4 cut(s)	243, 444, 1926, 2590
EcoRV	GATATC	1 cut(s)	340
EcoT14I	CCWWGG	4 cut(s)	1038, 1143, 1637, 2047
EcoT38I	GRGCYC	2 cut(s)	70, 978
ErhI	CCWWGG	4 cut(s)	1038, 1143, 1637, 2047
Esp3I	CGTCTC	2 cut(s)	84, 924
FalI	AAGNNNNNCTT	4 cut(s)	608, 640, 1675, 1707
FaqI	GGGAC	6 cut(s)	146, 470, 1010, 2007, 2057, 2355
FauI	CCCGC	1 cut(s)	495
FbaI	TGATCA	2 cut(s)	1324, 1833
FblI	GTMKAC	2 cut(s)	1234, 2493
Fnu4HI	GCNGC	7 cut(s)	741, 901, 904, 1549, 1620, 2147, 2253
FokI	GGATG	6 cut(s)	550, 598, 758, 833, 1067, 1959
FriOI	GRGCYC	2 cut(s)	70, 978
Fsp4HI	GCNGC	7 cut(s)	741, 901, 904, 1549, 1620, 2147, 2253
FspBI	CTAG	5 cut(s)	563, 1424, 1853, 2048, 2240
GlaI	GCGC	2 cut(s)	408, 1457
GluI	GCNGC	7 cut(s)	741, 901, 904, 1549, 1620, 2147, 2253
GsuI	CTGGAG	3 cut(s)	1910, 2207, 2318
HaeII	RGCGCY	2 cut(s)	410, 1459
HaeIII	GGCC	5 cut(s)	832, 860, 1142, 1356, 1796
HapII	CCGG	3 cut(s)	302, 1052, 1363
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	2 cut(s)	409, 1458
Hin6I	GCGC	2 cut(s)	407, 1456
HinP1I	GCGC	2 cut(s)	407, 1456
HincII	GTYRAC	1 cut(s)	1699
HindII	GTYRAC	1 cut(s)	1699
HpaII	CCGG	3 cut(s)	302, 1052, 1363
HphI	GGTGA	4 cut(s)	440, 461, 763, 2186
Hpy166II	GTNNAC	7 cut(s)	37, 771, 952, 1167, 1235, 1699, 2494
Hpy188I	TCNGA	9 cut(s)	162, 708, 754, 760, 1162, 1845, 1881, 2194, 2280
Hpy8I	GTNNAC	7 cut(s)	37, 771, 952, 1167, 1235, 1699, 2494
Hpy99I	CGWCG	2 cut(s)	2420, 2582
HpyAV	CCTTC	9 cut(s)	107, 613, 1063, 1067, 1167, 1467, 1698, 2132, 2450
HpyCH4IV	ACGT	6 cut(s)	283, 364, 483, 933, 2418, 2580
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1374, 1554, 2249, 2302
HpyF3I	CTNAG	9 cut(s)	107, 200, 779, 1161, 1623, 1733, 1868, 2150, 2330
HpySE526I	ACGT	6 cut(s)	283, 364, 483, 933, 2418, 2580
HspAI	GCGC	2 cut(s)	407, 1456
Ksp22I	TGATCA	2 cut(s)	1324, 1833
Kzo9I	GATC	8 cut(s)	298, 663, 796, 925, 1031, 1324, 1641, 1833
LguI	GCTCTTC	1 cut(s)	2201
LmnI	GCTCC	4 cut(s)	1453, 2052, 2320, 2348
Lsp1109I	GCAGC	7 cut(s)	752, 890, 912, 1560, 1631, 2158, 2239
LweI	GCATC	5 cut(s)	427, 915, 1424, 1937, 2239
MaeI	CTAG	5 cut(s)	563, 1424, 1853, 2048, 2240
MaeII	ACGT	6 cut(s)	283, 364, 483, 933, 2418, 2580
MaeIII	GTNAC	4 cut(s)	471, 493, 1665, 1728
MalI	GATC	8 cut(s)	300, 665, 798, 927, 1033, 1326, 1643, 1835
MbiI	CCGCTC	1 cut(s)	2343
MboI	GATC	8 cut(s)	298, 663, 796, 925, 1031, 1324, 1641, 1833
MfeI	CAATTG	1 cut(s)	1905
MhlI	GDGCHC	4 cut(s)	70, 954, 978, 2034
MlsI	TGGCCA	1 cut(s)	1142
MluNI	TGGCCA	1 cut(s)	1142
MlyI	GAGTC	9 cut(s)	7, 140, 866, 951, 953, 1159, 1373, 1580, 1736
MmeI	TCCRAC	2 cut(s)	1704, 2426
Mox20I	TGGCCA	1 cut(s)	1142
MroXI	GAANNNNTTC	2 cut(s)	1185, 1823
MscI	TGGCCA	1 cut(s)	1142
MslI	CAYNNNNRTG	2 cut(s)	426, 815
Msp20I	TGGCCA	1 cut(s)	1142
MspA1I	CMGCKG	6 cut(s)	106, 743, 903, 1002, 1017, 1622
MspI	CCGG	3 cut(s)	302, 1052, 1363
MspR9I	CCNGG	7 cut(s)	245, 303, 446, 1052, 1364, 1928, 2592
MunI	CAATTG	1 cut(s)	1905
Mva1269I	GAATGC	1 cut(s)	1052
MvaI	CCWGG	4 cut(s)	245, 446, 1928, 2592
MwoI	GCNNNNNNNGC	4 cut(s)	1374, 1554, 2249, 2302
NciI	CCSGG	3 cut(s)	303, 1052, 1364
NcoI	CCATGG	1 cut(s)	1637
NdeII	GATC	8 cut(s)	298, 663, 796, 925, 1031, 1324, 1641, 1833
NlaIV	GGNNCC	4 cut(s)	134, 187, 2045, 2054
NmeAIII	GCCGAG	1 cut(s)	1484
NmuCI	GTSAC	4 cut(s)	471, 493, 1665, 1728
NspI	RCATGY	4 cut(s)	718, 1860, 2022, 2265
NspV	TTCGAA	2 cut(s)	347, 2161
PaeI	GCATGC	1 cut(s)	718
PaeR7I	CTCGAG	1 cut(s)	2027
PagI	TCATGA	1 cut(s)	295
PaqCI	CACCTGC	1 cut(s)	2043
PciI	ACATGT	1 cut(s)	2018
PciSI	GCTCTTC	1 cut(s)	2201
PctI	GAATGC	1 cut(s)	1052
PdmI	GAANNNNTTC	2 cut(s)	1185, 1823
PfeI	GAWTC	5 cut(s)	154, 306, 703, 755, 1217
PflFI	GACNNNGTC	2 cut(s)	176, 2582
PflMI	CCANNNNNTGG	1 cut(s)	1933
PfoI	TCCNGGA	1 cut(s)	301
PkrI	GCNGC	7 cut(s)	742, 902, 905, 1550, 1621, 2148, 2254
PleI	GAGTC	9 cut(s)	7, 140, 866, 950, 953, 1158, 1373, 1580, 1735
PpsI	GAGTC	9 cut(s)	7, 140, 866, 950, 953, 1158, 1373, 1580, 1735
Ppu21I	YACGTR	1 cut(s)	365
PpuMI	RGGWCCY	2 cut(s)	133, 2044
PscI	ACATGT	1 cut(s)	2018
Psp124BI	GAGCTC	1 cut(s)	70
Psp5II	RGGWCCY	2 cut(s)	133, 2044
Psp6I	CCWGG	4 cut(s)	243, 444, 1926, 2590
PspGI	CCWGG	4 cut(s)	243, 444, 1926, 2590
PspN4I	GGNNCC	4 cut(s)	134, 187, 2045, 2054
PspPI	GGNCC	5 cut(s)	133, 858, 1167, 1354, 2044
PspPPI	RGGWCCY	2 cut(s)	133, 2044
PspXI	VCTCGAGB	1 cut(s)	2027
PstI	CTGCAG	1 cut(s)	2257
PstNI	CAGNNNCTG	1 cut(s)	410
PsyI	GACNNNGTC	2 cut(s)	176, 2582
PvuII	CAGCTG	4 cut(s)	106, 903, 1002, 1622
RsaI	GTAC	4 cut(s)	550, 1506, 1567, 2260
RsaNI	GTAC	4 cut(s)	549, 1505, 1566, 2259
RseI	CAYNNNNRTG	2 cut(s)	426, 815
SacI	GAGCTC	1 cut(s)	70
SapI	GCTCTTC	1 cut(s)	2201
SatI	GCNGC	7 cut(s)	741, 901, 904, 1549, 1620, 2147, 2253
Sau3AI	GATC	8 cut(s)	298, 663, 796, 925, 1031, 1324, 1641, 1833
Sau96I	GGNCC	5 cut(s)	133, 858, 1167, 1354, 2044
SchI	GAGTC	9 cut(s)	7, 140, 866, 951, 953, 1159, 1373, 1580, 1736
ScrFI	CCNGG	7 cut(s)	245, 303, 446, 1052, 1364, 1928, 2592
SduI	GDGCHC	4 cut(s)	70, 954, 978, 2034
SfaNI	GCATC	5 cut(s)	427, 915, 1424, 1937, 2239
SfcI	CTRYAG	2 cut(s)	402, 2253
Sfr274I	CTCGAG	1 cut(s)	2027
SfuI	TTCGAA	2 cut(s)	347, 2161
SinI	GGWCC	3 cut(s)	133, 1167, 2044
SlaI	CTCGAG	1 cut(s)	2027
SmiI	ATTTAAAT	1 cut(s)	846
SmiMI	CAYNNNNRTG	2 cut(s)	426, 815
SmlI	CTYRAG	6 cut(s)	69, 310, 971, 2027, 2126, 2231
SmoI	CTYRAG	6 cut(s)	69, 310, 971, 2027, 2126, 2231
SphI	GCATGC	1 cut(s)	718
SsiI	CCGC	5 cut(s)	488, 700, 743, 1017, 2341
SspMI	CTAG	5 cut(s)	563, 1424, 1853, 2048, 2240
SstI	GAGCTC	1 cut(s)	70
StyD4I	CCNGG	7 cut(s)	243, 301, 444, 1050, 1362, 1926, 2590
StyI	CCWWGG	4 cut(s)	1038, 1143, 1637, 2047
SwaI	ATTTAAAT	1 cut(s)	846
TaiI	ACGT	6 cut(s)	286, 367, 486, 936, 2421, 2583
TfiI	GAWTC	5 cut(s)	154, 306, 703, 755, 1217
TscAI	CASTG	5 cut(s)	1116, 1343, 1612, 1876, 2115
TseFI	GTSAC	4 cut(s)	471, 493, 1665, 1728
TseI	GCWGC	7 cut(s)	740, 900, 903, 1548, 1619, 2146, 2252
Tsp45I	GTSAC	4 cut(s)	471, 493, 1665, 1728
TspDTI	ATGAA	8 cut(s)	167, 231, 284, 457, 1178, 1182, 1266, 1283
TspGWI	ACGGA	1 cut(s)	1282
TspRI	CASTG	5 cut(s)	1116, 1343, 1612, 1876, 2115
Tth111I	GACNNNGTC	2 cut(s)	176, 2582
Van91I	CCANNNNNTGG	1 cut(s)	1933
VneI	GTGCAC	1 cut(s)	950
VpaK11BI	GGWCC	3 cut(s)	133, 1167, 2044
XapI	RAATTY	5 cut(s)	464, 841, 1184, 1541, 1954
XceI	RCATGY	4 cut(s)	718, 1860, 2022, 2265
XhoI	CTCGAG	1 cut(s)	2027
XmaJI	CCTAGG	1 cut(s)	2047
XmiI	GTMKAC	2 cut(s)	1234, 2493
XmnI	GAANNNNTTC	2 cut(s)	1185, 1823
XspI	CTAG	5 cut(s)	563, 1424, 1853, 2048, 2240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.