Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8260007.1

Orthogroup ID

OG0000540

Physical Location & Seq

Genomic Coordinates Reverse (-)

370 .. 806

Gene Structure 437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8260007.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 437 bp

gtttctccatctatcctgaagactatgagatacgtgctgatcagttaatccattggtggattggagaaggcctcgtgcaaagcaagggctcaagaacagcagtagaagtgggatatgagtatcttgcggaactgataagcagatgcttggttgaaattgtgcagcatagaggatttgatgggagagtctacaagtgcaagattcatgatatggtccgggaactgataataatgattgcagaggaggaggaattatgcggctttgacgaacaaggcagacagaaattgacagcaaatactaggtggttatgctttattgatgaaatggaggagaagtcattgaaacgtagttcaaagctcagggcattgttgatgatgtcaagtcgcagatttgactttgaaaggaattctctgcgatccctcagaatgttggattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0023052 GO:0042742 GO:0043207 GO:0043621 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

144

Amino Acids

17.1

Weight (kDa)

5.72

Isoelectric Point (pI)

58.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50950 AT3G50950
fragaria_vesca	FvH4_1g12710 FvH4_1g12710 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820
malus_domestica	MD02G1141100.v1.1 MD10G1333100.v1.1
prunus_persica	Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.6G150700_v2.0.a1 Prupe.7G160100_v2.0.a1 Prupe.7G160100_v2.0.a1
pyrus_communis	pycom02g11110 pycom10g28240 pycom10g28340 pycom10g28360 pycom10g28450
rosa_chinensis	RchiOBHm_Chr2g0100711 RchiOBHm_Chr3g0485861 RchiOBHm_Chr4g0391451 RchiOBHm_Chr4g0391591 RchiOBHm_Chr4g0391601 RchiOBHm_Chr4g0391681 RchiOBHm_Chr5g0001141 RchiOBHm_Chr5g0001221
rosa_laevigata	RLG00000017001
rosa_multiflora	Rmu_co8260007.1_g000001 Rmu_co8260103.1_g000001 Rmu_co8519155.1_g000001 Rmu_sc0000060.1_g000050 Rmu_sc0000255.1_g000036 Rmu_sc0001174.1_g000023 Rmu_sc0001174.1_g000025 Rmu_sc0001659.1_g000009 Rmu_sc0001706.1_g000009 Rmu_sc0001706.1_g000024 Rmu_sc0001706.1_g000035 Rmu_sc0004189.1_g000018 Rmu_sc0004189.1_g000030 Rmu_sc0004862.1_g000002 Rmu_sc0004876.1_g000038 Rmu_sc0023741.1_g000004
rosa_roxburghii	Rroxscaffold_1G00075100 Rroxscaffold_1G00075160 Rroxscaffold_1G00075210 Rroxscaffold_5G00337160 Rroxscaffold_5G00386590 Rroxscaffold_6G00396300
rosa_rugosa	Rorug03G0336200 Rorug03G0336300 Rorug04G0389400
rosa_samantha	Rh2AG140400 Rh2BG144100 Rh2CG145400 Rh2DG144900 Rh3AG271200 Rh4AG038000 Rh4AG038700 Rh4BG032000 Rh4BG032800 Rh4CG041100 Rh4CG041300 Rh4DG035500 Rh4DG035600 Rh5AG008800 Rh5AG009100 Rh5BG010900 Rh5BG011500 Rh5BG011600 Rh5BG012000 Rh5CG009400 Rh5CG010000 Rh5DG009800
rosa_wichuraiana	Rw2G010940 Rw4G002950 Rw4G002990 Rw4G003000 Rw5G000880 Rw5G000950 Rw5G000960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	188
AciI	CCGC	2 cut(s)	127, 257
AclWI	GGATC	1 cut(s)	410
AcsI	RAATTY	1 cut(s)	405
AcuI	CTGAAG	1 cut(s)	38
AgsI	TTSAA	4 cut(s)	154, 342, 353, 400
AluBI	AGCT	1 cut(s)	357
AluI	AGCT	1 cut(s)	357
AlwI	GGATC	1 cut(s)	410
AoxI	GGCC	1 cut(s)	69
ApeKI	GCWGC	1 cut(s)	162
ApoI	RAATTY	1 cut(s)	405
AspS9I	GGNCC	1 cut(s)	213
AsuC2I	CCSGG	1 cut(s)	217
AvaII	GGWCC	1 cut(s)	213
BanII	GRGCYC	1 cut(s)	91
BauI	CACGAG	1 cut(s)	73
BbsI	GAAGAC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	174
BccI	CCATC	2 cut(s)	16, 172
BclI	TGATCA	1 cut(s)	39
BcnI	CCSGG	1 cut(s)	217
BfaI	CTAG	1 cut(s)	299
BisI	GCNGC	2 cut(s)	163, 258
BlsI	GCNGC	2 cut(s)	164, 259
Bme1390I	CCNGG	1 cut(s)	217
Bme18I	GGWCC	1 cut(s)	213
BmgT120I	GGNCC	1 cut(s)	213
BmrFI	CCNGG	1 cut(s)	217
BmsI	GCATC	1 cut(s)	133
BpiI	GAAGAC	1 cut(s)	26
BplI	GAGNNNNNCTC	2 cut(s)	56, 88
Bpu10I	CCTNAGC	1 cut(s)	358
BpuEI	CTTGAG	1 cut(s)	75
BpuMI	CCSGG	1 cut(s)	217
BsaAI	YACGTR	1 cut(s)	34
BsaXI	ACNNNNNCTCC	2 cut(s)	319, 349
BseMII	CTCAG	2 cut(s)	372, 435
BseRI	GAGGAG	3 cut(s)	256, 259, 343
BseXI	GCAGC	1 cut(s)	174
BsgI	GTGCAG	1 cut(s)	181
BshFI	GGCC	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	216
BsnI	GGCC	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	2 cut(s)	39, 415
BspACI	CCGC	2 cut(s)	127, 257
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	2 cut(s)	371, 434
BspHI	TCATGA	1 cut(s)	204
BspPI	GGATC	1 cut(s)	410
BssMI	GATC	2 cut(s)	39, 415
BssSI	CACGAG	1 cut(s)	73
Bst2BI	CACGAG	1 cut(s)	73
BstBAI	YACGTR	1 cut(s)	34
BstDEI	CTNAG	2 cut(s)	358, 421
BstKTI	GATC	2 cut(s)	42, 418
BstMBI	GATC	2 cut(s)	39, 415
BstSCI	CCNGG	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	174
BstV2I	GAAGAC	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	71
CciI	TCATGA	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	213
CviAII	CATG	1 cut(s)	205
CviJI	RGCY	4 cut(s)	71, 89, 260, 357
CviKI_1	RGCY	4 cut(s)	71, 89, 260, 357
DdeI	CTNAG	2 cut(s)	358, 421
DpnI	GATC	2 cut(s)	41, 417
DpnII	GATC	2 cut(s)	39, 415
Eco147I	AGGCCT	1 cut(s)	71
Eco24I	GRGCYC	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	38
EcoRI	GAATTC	1 cut(s)	405
EcoT38I	GRGCYC	1 cut(s)	91
FaeI	CATG	1 cut(s)	208
FaiI	YATR	7 cut(s)	26, 116, 167, 206, 211, 255, 309
FatI	CATG	1 cut(s)	204
FbaI	TGATCA	1 cut(s)	39
FblI	GTMKAC	1 cut(s)	188
Fnu4HI	GCNGC	2 cut(s)	163, 258
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	2 cut(s)	163, 258
FspBI	CTAG	1 cut(s)	299
GluI	GCNGC	2 cut(s)	163, 258
HaeIII	GGCC	1 cut(s)	71
HapII	CCGG	1 cut(s)	216
Hin1II	CATG	1 cut(s)	208
HinfI	GANTC	2 cut(s)	185, 201
HpaII	CCGG	1 cut(s)	216
Hpy166II	GTNNAC	1 cut(s)	189
Hpy188I	TCNGA	1 cut(s)	424
Hpy188III	TCNNGA	3 cut(s)	16, 92, 205
Hpy8I	GTNNAC	1 cut(s)	189
HpyAV	CCTTC	1 cut(s)	61
HpyCH4IV	ACGT	2 cut(s)	33, 345
HpyCH4V	TGCA	4 cut(s)	78, 162, 197, 238
HpyF3I	CTNAG	2 cut(s)	358, 421
HpySE526I	ACGT	2 cut(s)	33, 345
Hsp92II	CATG	1 cut(s)	208
Ksp22I	TGATCA	1 cut(s)	39
Kzo9I	GATC	2 cut(s)	39, 415
LpnPI	CCDG	3 cut(s)	29, 229, 345
Lsp1109I	GCAGC	1 cut(s)	174
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	2 cut(s)	33, 345
MalI	GATC	2 cut(s)	41, 417
MboI	GATC	2 cut(s)	39, 415
MboII	GAAGA	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	4 cut(s)	155, 250, 283, 405
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	1 cut(s)	410
MnlI	CCTC	7 cut(s)	82, 163, 234, 237, 240, 321, 430
MseI	TTAA	2 cut(s)	46, 435
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	1 cut(s)	217
NciI	CCSGG	1 cut(s)	217
NdeII	GATC	2 cut(s)	39, 415
NlaIII	CATG	1 cut(s)	208
PagI	TCATGA	1 cut(s)	204
PceI	AGGCCT	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	201
PfoI	TCCNGGA	1 cut(s)	215
PkrI	GCNGC	2 cut(s)	164, 259
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
Ppu21I	YACGTR	1 cut(s)	34
PspPI	GGNCC	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	46, 435
SatI	GCNGC	2 cut(s)	163, 258
Sau3AI	GATC	2 cut(s)	39, 415
Sau96I	GGNCC	1 cut(s)	213
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	1 cut(s)	217
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	4 cut(s)	36, 304, 348, 359
SfaNI	GCATC	1 cut(s)	133
SinI	GGWCC	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
Sse9I	AATT	4 cut(s)	155, 250, 283, 405
SseBI	AGGCCT	1 cut(s)	71
SsiI	CCGC	2 cut(s)	127, 257
SspMI	CTAG	1 cut(s)	299
StuI	AGGCCT	1 cut(s)	71
StyD4I	CCNGG	1 cut(s)	215
TaiI	ACGT	2 cut(s)	36, 348
TasI	AATT	4 cut(s)	155, 250, 283, 405
TauI	GCSGC	1 cut(s)	260
TfiI	GAWTC	1 cut(s)	201
Tru1I	TTAA	2 cut(s)	46, 435
Tru9I	TTAA	2 cut(s)	46, 435
TseI	GCWGC	1 cut(s)	162
TspDTI	ATGAA	2 cut(s)	193, 335
VpaK11BI	GGWCC	1 cut(s)	213
XapI	RAATTY	1 cut(s)	405
XcmI	CCANNNNNNNNNTGG	1 cut(s)	58
XmiI	GTMKAC	1 cut(s)	188
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.