Rh4DG035600

NB-ARC domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
5948939 .. 5949271
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG035600.1

Sequence Viewer

Length: 333 bp
ATGCTAGAAAGGCTGACCCCTCCTCCAAGCCTCCAAGAGCTGTATCTTAGGAATTACAAGAAGGAAACTCTGCCTAGCTGGGTTAATCCCGGACAGCTTTCAAGATTGCAGTATCTTTGCATCGAGAATGGAGACCTTGTCAAGCTAAGCAGTGGTCAAACCACCTGGAACCTTGAAGGCCTGTGTCTCAAGTACTTGATGAGGCTAAAGGTAGACTGGAAGGACTTGGAGAAGGATATGCCTGTACTCCACTACATGGAGATCAGTCATTGTTACAACCTGAAGGATTTCCCATGTTCAGTTATGGAACCTGGGGTCTGGAGAAAGAATTAA

Protein Analysis

110

Amino Acids

13.02

Weight (kDa)

7.64

Isoelectric Point (pI)

46.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_R13L1-DRL21 PF25019 2 - 59 1.5e-07 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000540)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50950 AT3G50950
fragaria_vesca FvH4_1g12710 FvH4_1g12710 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820
malus_domestica MD02G1141100.v1.1 MD10G1333100.v1.1
prunus_persica Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.6G150700_v2.0.a1 Prupe.7G160100_v2.0.a1 Prupe.7G160100_v2.0.a1
pyrus_communis pycom02g11110 pycom10g28240 pycom10g28340 pycom10g28360 pycom10g28450
rosa_chinensis RchiOBHm_Chr2g0100711 RchiOBHm_Chr3g0485861 RchiOBHm_Chr4g0391451 RchiOBHm_Chr4g0391591 RchiOBHm_Chr4g0391601 RchiOBHm_Chr4g0391681 RchiOBHm_Chr5g0001141 RchiOBHm_Chr5g0001221
rosa_laevigata RLG00000017001
rosa_multiflora Rmu_co8260007.1_g000001 Rmu_co8260103.1_g000001 Rmu_co8519155.1_g000001 Rmu_sc0000060.1_g000050 Rmu_sc0000255.1_g000036 Rmu_sc0001174.1_g000023 Rmu_sc0001174.1_g000025 Rmu_sc0001659.1_g000009 Rmu_sc0001706.1_g000009 Rmu_sc0001706.1_g000024 Rmu_sc0001706.1_g000035 Rmu_sc0004189.1_g000018 Rmu_sc0004189.1_g000030 Rmu_sc0004862.1_g000002 Rmu_sc0004876.1_g000038 Rmu_sc0023741.1_g000004
rosa_roxburghii Rroxscaffold_1G00075100 Rroxscaffold_1G00075160 Rroxscaffold_1G00075210 Rroxscaffold_5G00337160 Rroxscaffold_5G00386590 Rroxscaffold_6G00396300
rosa_rugosa Rorug03G0336200 Rorug03G0336300 Rorug04G0389400
rosa_samantha Rh2AG140400 Rh2BG144100 Rh2CG145400 Rh2DG144900 Rh3AG271200 Rh4AG038000 Rh4AG038700 Rh4BG032000 Rh4BG032800 Rh4CG041100 Rh4CG041300 Rh4DG035500 Rh4DG035600 Rh5AG008800 Rh5AG009100 Rh5BG010900 Rh5BG011500 Rh5BG011600 Rh5BG012000 Rh5CG009400 Rh5CG010000 Rh5DG009800
rosa_wichuraiana Rw2G010940 Rw4G002950 Rw4G002990 Rw4G003000 Rw5G000880 Rw5G000950 Rw5G000960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 256
AccI GTMKAC 1 cut(s) 213
AcuI CTGAAG 1 cut(s) 302
AfaI GTAC 2 cut(s) 194, 246
AfiI CCNNNNNNNGG 1 cut(s) 256
AgsI TTSAA 2 cut(s) 102, 176
AjnI CCWGG 2 cut(s) 164, 310
AluBI AGCT 4 cut(s) 40, 78, 97, 145
AluI AGCT 4 cut(s) 40, 78, 97, 145
Alw26I GTCTC 2 cut(s) 126, 191
AoxI GGCC 1 cut(s) 178
Asp700I GAANNNNTTC 1 cut(s) 287
AsuC2I CCSGG 1 cut(s) 90
BciT130I CCWGG 2 cut(s) 166, 312
BcnI CCSGG 1 cut(s) 90
BcoDI GTCTC 2 cut(s) 126, 191
BfaI CTAG 2 cut(s) 5, 75
BlpI GCTNAGC 1 cut(s) 146
BmcAI AGTACT 1 cut(s) 194
Bme1390I CCNGG 3 cut(s) 90, 166, 312
BmiI GGNNCC 2 cut(s) 170, 309
BmrFI CCNGG 3 cut(s) 90, 166, 312
BmsI GCATC 1 cut(s) 129
Bpu1102I GCTNAGC 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 90
BsaI GGTCTC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 311
BsaXI ACNNNNNCTCC 4 cut(s) 7, 37, 123, 153
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse1I ACTGG 1 cut(s) 221
BseBI CCWGG 2 cut(s) 166, 312
BseDI CCNNGG 1 cut(s) 311
BseLI CCNNNNNNNGG 1 cut(s) 256
BseNI ACTGG 1 cut(s) 221
BseRI GAGGAG 1 cut(s) 12
BseYI CCCAGC 1 cut(s) 78
BshFI GGCC 1 cut(s) 180
BsiSI CCGG 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 256
BsmAI GTCTC 2 cut(s) 126, 191
BsnI GGCC 1 cut(s) 180
Bso31I GGTCTC 1 cut(s) 126
Bsp143I GATC 1 cut(s) 261
Bsp1720I GCTNAGC 1 cut(s) 146
BspANI GGCC 1 cut(s) 180
BspLI GGNNCC 2 cut(s) 170, 309
BspTNI GGTCTC 1 cut(s) 126
BsrI ACTGG 1 cut(s) 221
BssECI CCNNGG 1 cut(s) 311
BssMI GATC 1 cut(s) 261
Bst2UI CCWGG 2 cut(s) 166, 312
BstDEI CTNAG 2 cut(s) 47, 146
BstKTI GATC 1 cut(s) 264
BstMAI GTCTC 2 cut(s) 126, 191
BstMBI GATC 1 cut(s) 261
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 2 cut(s) 166, 312
BstSCI CCNGG 3 cut(s) 88, 164, 310
BsuRI GGCC 1 cut(s) 180
BtsI GCAGTG 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 157
Csp6I GTAC 2 cut(s) 193, 245
CviAII CATG 2 cut(s) 256, 294
CviJI RGCY 8 cut(s) 13, 30, 40, 78, 97, 145, 180, 205
CviKI_1 RGCY 8 cut(s) 13, 30, 40, 78, 97, 145, 180, 205
CviQI GTAC 2 cut(s) 193, 245
DdeI CTNAG 2 cut(s) 47, 146
DpnI GATC 1 cut(s) 263
DpnII GATC 1 cut(s) 261
Eco147I AGGCCT 1 cut(s) 180
Eco31I GGTCTC 1 cut(s) 126
Eco57I CTGAAG 1 cut(s) 302
EcoRII CCWGG 2 cut(s) 164, 310
FaeI CATG 2 cut(s) 259, 297
FaiI YATR 4 cut(s) 239, 257, 295, 305
FatI CATG 2 cut(s) 255, 293
FblI GTMKAC 1 cut(s) 213
FspBI CTAG 2 cut(s) 5, 75
GsaI CCCAGC 1 cut(s) 82
HaeIII GGCC 1 cut(s) 180
HapII CCGG 1 cut(s) 90
Hin1II CATG 2 cut(s) 259, 297
HpaII CCGG 1 cut(s) 90
Hpy166II GTNNAC 1 cut(s) 214
Hpy188III TCNNGA 3 cut(s) 102, 124, 319
Hpy8I GTNNAC 1 cut(s) 214
HpyAV CCTTC 5 cut(s) 55, 170, 214, 226, 277
HpyCH4V TGCA 2 cut(s) 109, 120
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 2 cut(s) 47, 146
Hsp92II CATG 2 cut(s) 259, 297
Kzo9I GATC 1 cut(s) 261
LweI GCATC 1 cut(s) 129
MaeI CTAG 2 cut(s) 5, 75
MaeIII GTNAC 1 cut(s) 272
MalI GATC 1 cut(s) 263
MboI GATC 1 cut(s) 261
MluCI AATT 2 cut(s) 52, 328
MnlI CCTC 4 cut(s) 30, 33, 41, 195
MroXI GAANNNNTTC 1 cut(s) 287
MseI TTAA 2 cut(s) 84, 331
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 3 cut(s) 90, 166, 312
MvaI CCWGG 2 cut(s) 166, 312
MwoI GCNNNNNNNGC 1 cut(s) 10
NciI CCSGG 1 cut(s) 90
NdeII GATC 1 cut(s) 261
NlaIII CATG 2 cut(s) 259, 297
NlaIV GGNNCC 2 cut(s) 170, 309
PceI AGGCCT 1 cut(s) 180
PdmI GAANNNNTTC 1 cut(s) 287
PflFI GACNNNGTC 1 cut(s) 137
PflMI CCANNNNNTGG 1 cut(s) 256
PfoI TCCNGGA 1 cut(s) 88
Psp6I CCWGG 2 cut(s) 164, 310
PspFI CCCAGC 1 cut(s) 78
PspGI CCWGG 2 cut(s) 164, 310
PspN4I GGNNCC 2 cut(s) 170, 309
PsyI GACNNNGTC 1 cut(s) 137
RsaI GTAC 2 cut(s) 194, 246
RsaNI GTAC 2 cut(s) 193, 245
SaqAI TTAA 2 cut(s) 84, 331
Sau3AI GATC 1 cut(s) 261
ScaI AGTACT 1 cut(s) 194
ScrFI CCNGG 3 cut(s) 90, 166, 312
SfaNI GCATC 1 cut(s) 129
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 2 cut(s) 52, 328
SseBI AGGCCT 1 cut(s) 180
SspMI CTAG 2 cut(s) 5, 75
StuI AGGCCT 1 cut(s) 180
StyD4I CCNGG 3 cut(s) 88, 164, 310
TaqI TCGA 1 cut(s) 123
TasI AATT 2 cut(s) 52, 328
TatI WGTACW 2 cut(s) 192, 244
Tru1I TTAA 2 cut(s) 84, 331
Tru9I TTAA 2 cut(s) 84, 331
TscAI CASTG 1 cut(s) 157
TspRI CASTG 1 cut(s) 157
Tth111I GACNNNGTC 1 cut(s) 137
Van91I CCANNNNNTGG 1 cut(s) 256
XmiI GTMKAC 1 cut(s) 213
XmnI GAANNNNTTC 1 cut(s) 287
XspI CTAG 2 cut(s) 5, 75
ZrmI AGTACT 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.