Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8260103.1

Orthogroup ID

OG0000540

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 513

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8260103.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 505 bp

atgtcgttagtagtggaggctatggtcacgactctaacggagcatgtgttcacagctctaatcaaccaggctgaatttgcacttgacttcagcggccagtttgagcagttgaagacagggcttgatctcaccaaggccttacttgcagacacggagagtctcaaccacaagaacaacattgtcaaggcagcattatttgagctgagagaagtcatctacaaagccgacgatgtgctcactgattgcttggttagagatgaatacagaaaggatagatcttgttccggctccttgtttcacgatccattcttcctgcatcgtacaggaaagaaattgaaagacattaatttgcgtatgaaggagatagagcagaccttgggcaagtttttgagggctcctgataacatacatagagaagatgcttaccaagttagggtgatggtttcacaggactggaatccaactgagataattgggttggatagcgatgtggagaagattaagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0023052 GO:0042742 GO:0043207 GO:0043621 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

168

Amino Acids

19.29

Weight (kDa)

5.38

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50950 AT3G50950
fragaria_vesca	FvH4_1g12710 FvH4_1g12710 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820
malus_domestica	MD02G1141100.v1.1 MD10G1333100.v1.1
prunus_persica	Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.6G150700_v2.0.a1 Prupe.7G160100_v2.0.a1 Prupe.7G160100_v2.0.a1
pyrus_communis	pycom02g11110 pycom10g28240 pycom10g28340 pycom10g28360 pycom10g28450
rosa_chinensis	RchiOBHm_Chr2g0100711 RchiOBHm_Chr3g0485861 RchiOBHm_Chr4g0391451 RchiOBHm_Chr4g0391591 RchiOBHm_Chr4g0391601 RchiOBHm_Chr4g0391681 RchiOBHm_Chr5g0001141 RchiOBHm_Chr5g0001221
rosa_laevigata	RLG00000017001
rosa_multiflora	Rmu_co8260007.1_g000001 Rmu_co8260103.1_g000001 Rmu_co8519155.1_g000001 Rmu_sc0000060.1_g000050 Rmu_sc0000255.1_g000036 Rmu_sc0001174.1_g000023 Rmu_sc0001174.1_g000025 Rmu_sc0001659.1_g000009 Rmu_sc0001706.1_g000009 Rmu_sc0001706.1_g000024 Rmu_sc0001706.1_g000035 Rmu_sc0004189.1_g000018 Rmu_sc0004189.1_g000030 Rmu_sc0004862.1_g000002 Rmu_sc0004876.1_g000038 Rmu_sc0023741.1_g000004
rosa_roxburghii	Rroxscaffold_1G00075100 Rroxscaffold_1G00075160 Rroxscaffold_1G00075210 Rroxscaffold_5G00337160 Rroxscaffold_5G00386590 Rroxscaffold_6G00396300
rosa_rugosa	Rorug03G0336200 Rorug03G0336300 Rorug04G0389400
rosa_samantha	Rh2AG140400 Rh2BG144100 Rh2CG145400 Rh2DG144900 Rh3AG271200 Rh4AG038000 Rh4AG038700 Rh4BG032000 Rh4BG032800 Rh4CG041100 Rh4CG041300 Rh4DG035500 Rh4DG035600 Rh5AG008800 Rh5AG009100 Rh5BG010900 Rh5BG011500 Rh5BG011600 Rh5BG012000 Rh5CG009400 Rh5CG010000 Rh5DG009800
rosa_wichuraiana	Rw2G010940 Rw4G002950 Rw4G002990 Rw4G003000 Rw5G000880 Rw5G000950 Rw5G000960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	93
AclWI	GGATC	1 cut(s)	296
AcoI	YGGCCR	1 cut(s)	94
AcsI	RAATTY	1 cut(s)	74
AcuI	CTGAAG	1 cut(s)	73
AfaI	GTAC	1 cut(s)	322
AfiI	CCNNNNNNNGG	1 cut(s)	433
AgsI	TTSAA	2 cut(s)	112, 337
AjnI	CCWGG	1 cut(s)	66
AloI	GAACNNNNNNTCC	2 cut(s)	32, 64
AluBI	AGCT	2 cut(s)	56, 202
AluI	AGCT	2 cut(s)	56, 202
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	1 cut(s)	296
AoxI	GGCC	2 cut(s)	94, 135
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	74
AseI	ATTAAT	1 cut(s)	345
AsuHPI	GGTGA	2 cut(s)	121, 448
BanII	GRGCYC	1 cut(s)	397
BbsI	GAAGAC	1 cut(s)	119
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	200
BccI	CCATC	1 cut(s)	433
BciT130I	CCWGG	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	164
BglII	AGATCT	1 cut(s)	275
BisI	GCNGC	2 cut(s)	94, 189
BlsI	GCNGC	2 cut(s)	95, 190
Bme1390I	CCNGG	1 cut(s)	68
BmiI	GGNNCC	2 cut(s)	289, 396
BmrFI	CCNGG	1 cut(s)	68
BmsI	GCATC	2 cut(s)	325, 409
BpiI	GAAGAC	1 cut(s)	119
BsaJI	CCNNGG	2 cut(s)	132, 375
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse1I	ACTGG	2 cut(s)	97, 458
BseBI	CCWGG	1 cut(s)	68
BseDI	CCNNGG	2 cut(s)	132, 375
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMII	CTCAG	2 cut(s)	194, 456
BseNI	ACTGG	2 cut(s)	97, 458
BseXI	GCAGC	1 cut(s)	200
BshFI	GGCC	2 cut(s)	96, 137
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	285
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmAI	GTCTC	1 cut(s)	164
BsnI	GGCC	2 cut(s)	96, 137
Bsp1286I	GDGCHC	2 cut(s)	237, 397
Bsp143I	GATC	3 cut(s)	124, 275, 301
BspACI	CCGC	1 cut(s)	93
BspANI	GGCC	2 cut(s)	96, 137
BspCNI	CTCAG	2 cut(s)	195, 457
BspLI	GGNNCC	2 cut(s)	289, 396
BspPI	GGATC	1 cut(s)	296
BsrI	ACTGG	2 cut(s)	97, 458
BssECI	CCNNGG	2 cut(s)	132, 375
BssMI	GATC	3 cut(s)	124, 275, 301
BssT1I	CCWWGG	2 cut(s)	132, 375
Bst2UI	CCWGG	1 cut(s)	68
BstDEI	CTNAG	2 cut(s)	203, 465
BstKTI	GATC	3 cut(s)	127, 278, 304
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	3 cut(s)	124, 275, 301
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 143
BstNI	CCWGG	1 cut(s)	68
BstNSI	RCATGY	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	200
BstV2I	GAAGAC	1 cut(s)	119
BstX2I	RGATCY	1 cut(s)	275
BstYI	RGATCY	1 cut(s)	275
BsuRI	GGCC	2 cut(s)	96, 137
BtgZI	GCGATG	1 cut(s)	501
BtsIMutI	CAGTG	1 cut(s)	237
Csp6I	GTAC	1 cut(s)	321
CviAII	CATG	1 cut(s)	44
CviQI	GTAC	1 cut(s)	321
DdeI	CTNAG	2 cut(s)	203, 465
DpnI	GATC	3 cut(s)	126, 277, 303
DpnII	GATC	3 cut(s)	124, 275, 301
EaeI	YGGCCR	1 cut(s)	94
Eco130I	CCWWGG	2 cut(s)	132, 375
Eco147I	AGGCCT	1 cut(s)	137
Eco24I	GRGCYC	1 cut(s)	397
Eco57I	CTGAAG	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	66
EcoT14I	CCWWGG	2 cut(s)	132, 375
EcoT38I	GRGCYC	1 cut(s)	397
ErhI	CCWWGG	2 cut(s)	132, 375
FaeI	CATG	1 cut(s)	47
FaiI	YATR	5 cut(s)	23, 45, 356, 407, 411
FatI	CATG	1 cut(s)	43
Fnu4HI	GCNGC	2 cut(s)	94, 189
FriOI	GRGCYC	1 cut(s)	397
Fsp4HI	GCNGC	2 cut(s)	94, 189
GluI	GCNGC	2 cut(s)	94, 189
HaeIII	GGCC	2 cut(s)	96, 137
HapII	CCGG	1 cut(s)	285
Hin1II	CATG	1 cut(s)	47
HinfI	GANTC	3 cut(s)	31, 157, 457
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	2 cut(s)	121, 448
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188III	TCNNGA	3 cut(s)	28, 299, 398
Hpy8I	GTNNAC	1 cut(s)	51
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	1 cut(s)	352
HpyCH4V	TGCA	3 cut(s)	80, 146, 316
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 143
HpyF3I	CTNAG	2 cut(s)	203, 465
Hsp92II	CATG	1 cut(s)	47
Kzo9I	GATC	3 cut(s)	124, 275, 301
LmnI	GCTCC	3 cut(s)	40, 293, 400
Lsp1109I	GCAGC	1 cut(s)	200
LweI	GCATC	2 cut(s)	325, 409
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	3 cut(s)	126, 277, 303
MboI	GATC	3 cut(s)	124, 275, 301
MboII	GAAGA	3 cut(s)	124, 301, 428
MflI	RGATCY	1 cut(s)	275
MhlI	GDGCHC	2 cut(s)	237, 397
MluCI	AATT	4 cut(s)	74, 332, 346, 471
MlyI	GAGTC	2 cut(s)	25, 166
MmeI	TCCRAC	2 cut(s)	459, 485
MnlI	CCTC	2 cut(s)	10, 384
MseI	TTAA	2 cut(s)	345, 501
MspA1I	CMGCKG	1 cut(s)	93
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	68
MwoI	GCNNNNNNNGC	2 cut(s)	77, 143
NdeII	GATC	3 cut(s)	124, 275, 301
NlaIII	CATG	1 cut(s)	47
NlaIV	GGNNCC	2 cut(s)	289, 396
NmuCI	GTSAC	1 cut(s)	25
NspI	RCATGY	1 cut(s)	47
PceI	AGGCCT	1 cut(s)	137
PfeI	GAWTC	1 cut(s)	457
PkrI	GCNGC	2 cut(s)	95, 190
PleI	GAGTC	2 cut(s)	25, 165
PpsI	GAGTC	2 cut(s)	25, 165
PshBI	ATTAAT	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	2 cut(s)	289, 396
PsuI	RGATCY	1 cut(s)	275
RsaI	GTAC	1 cut(s)	322
RsaNI	GTAC	1 cut(s)	321
SaqAI	TTAA	2 cut(s)	345, 501
SatI	GCNGC	2 cut(s)	94, 189
Sau3AI	GATC	3 cut(s)	124, 275, 301
SchI	GAGTC	2 cut(s)	25, 166
ScrFI	CCNGG	1 cut(s)	68
SduI	GDGCHC	2 cut(s)	237, 397
SetI	ASST	3 cut(s)	58, 204, 377
SfaNI	GCATC	2 cut(s)	325, 409
Sse9I	AATT	4 cut(s)	74, 332, 346, 471
SseBI	AGGCCT	1 cut(s)	137
SsiI	CCGC	1 cut(s)	93
StuI	AGGCCT	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	66
StyI	CCWWGG	2 cut(s)	132, 375
TasI	AATT	4 cut(s)	74, 332, 346, 471
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	1 cut(s)	457
Tru1I	TTAA	2 cut(s)	345, 501
Tru9I	TTAA	2 cut(s)	345, 501
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	2 cut(s)	273, 371
TspGWI	ACGGA	2 cut(s)	53, 167
TspRI	CASTG	1 cut(s)	244
VspI	ATTAAT	1 cut(s)	345
XapI	RAATTY	1 cut(s)	74
XceI	RCATGY	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.