Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000540

Physical Location & Seq

Genomic Coordinates Reverse (-)

13040399 .. 13042108

Gene Structure 1710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G150700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGTTAAGAAACTTGGGAGATGCGAGCGTAGGAGACGATAAGGGTGAATTACTAAATAAAATAAATGAATATCTTTTAGGCAAGAGGTTTTTGATTGTGATGGATAATGTGTGGAGCTTGGATGTAACTTGGTGGCTCAGAATTTGTGAAGCGTTACCAAAGGGAAATGGAAGCAGCATCACCACAAGGATAGAGAAAGTTGCGCAGAAAATGGGAGTGAAGGAAGCAAGATCACATTGGCCCAAATGCCTCAGCAAGGACGATAGTGATGGAGGCGAGTGTATGCATCCAGAACTGGAAAATGTTGGAAAGGAGATTGTTGAGAGGTGTAAGGGCCTTCCACTAGCAATCAAGGCAGTTGGAGGAATAATGCTCTGCAAACCATCATGTTATCATGAATGGAGACGAATTGCTGACCATTTTCGTGAACGATTAGTAGAGAATGATAATTCAGTTATGGCTTTTCTACAACTAAGTTATGATGAACTCCCATCTTACTTGAAGTCTTGCTTCCTTTGTTTGTCTCTTTATCCTGAAGATTGCGTCATAACCAAAGACCAATTGGTACATTGGTGGCTTGGAGAAGGTTTTATTCCACTGAGAAATGGTAGATCAGCAATTGCAGCAGAGGAAGATTGTTTCTCAAGGCTAACGAATCGATGTTTGCTAGAAGTGGTAGACAAGACTTATCATGGAGCAATTTCCACATGTAAAATTCATGATATGGTCCGGGATGTGACCGGTGAAGTGAACAAGATTGCTTCAAACACTACAAAGAAGTTTTGTGATTCTCGAATCCTTCGAGCAATGGATCTGTCCAGGCTAGGTCTCTTAACTTTTCAATGTGGGACAAACACTCTCAACGCGCTACCCCAGCACCCTTGCTCTGATACCATGAAAGAAGTTGAGGTTTCATTCAAATATCTACCTAAAGGCTTGGGAAGGCTTTCAAATCTTGGAGTGTTATTGGGATATAAACCTACCAAATCAAAGCAGTTAGAAGACTGCAGGATTGACAAGCTGTTCCCTCCTCAACAGCTCCATGAGCTCAGCCTAAAATTCTATCCAAGAAAGATTAGTCCAGCCTGGCTCAATCCCATCTCACTTCCTATATTGAGGTATCTTTCAATATCATCAGGCAATCTTGCAAAAGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0023052 GO:0042742 GO:0043207 GO:0043621 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

387

Amino Acids

43.71

Weight (kDa)

8.25

Isoelectric Point (pI)

36.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50950 AT3G50950
fragaria_vesca	FvH4_1g12710 FvH4_1g12710 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820
malus_domestica	MD02G1141100.v1.1 MD10G1333100.v1.1
prunus_persica	Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.6G150700_v2.0.a1 Prupe.7G160100_v2.0.a1 Prupe.7G160100_v2.0.a1
pyrus_communis	pycom02g11110 pycom10g28240 pycom10g28340 pycom10g28360 pycom10g28450
rosa_chinensis	RchiOBHm_Chr2g0100711 RchiOBHm_Chr3g0485861 RchiOBHm_Chr4g0391451 RchiOBHm_Chr4g0391591 RchiOBHm_Chr4g0391601 RchiOBHm_Chr4g0391681 RchiOBHm_Chr5g0001141 RchiOBHm_Chr5g0001221
rosa_laevigata	RLG00000017001
rosa_multiflora	Rmu_co8260007.1_g000001 Rmu_co8260103.1_g000001 Rmu_co8519155.1_g000001 Rmu_sc0000060.1_g000050 Rmu_sc0000255.1_g000036 Rmu_sc0001174.1_g000023 Rmu_sc0001174.1_g000025 Rmu_sc0001659.1_g000009 Rmu_sc0001706.1_g000009 Rmu_sc0001706.1_g000024 Rmu_sc0001706.1_g000035 Rmu_sc0004189.1_g000018 Rmu_sc0004189.1_g000030 Rmu_sc0004862.1_g000002 Rmu_sc0004876.1_g000038 Rmu_sc0023741.1_g000004
rosa_roxburghii	Rroxscaffold_1G00075100 Rroxscaffold_1G00075160 Rroxscaffold_1G00075210 Rroxscaffold_5G00337160 Rroxscaffold_5G00386590 Rroxscaffold_6G00396300
rosa_rugosa	Rorug03G0336200 Rorug03G0336300 Rorug04G0389400
rosa_samantha	Rh2AG140400 Rh2BG144100 Rh2CG145400 Rh2DG144900 Rh3AG271200 Rh4AG038000 Rh4AG038700 Rh4BG032000 Rh4BG032800 Rh4CG041100 Rh4CG041300 Rh4DG035500 Rh4DG035600 Rh5AG008800 Rh5AG009100 Rh5BG010900 Rh5BG011500 Rh5BG011600 Rh5BG012000 Rh5CG009400 Rh5CG010000 Rh5DG009800
rosa_wichuraiana	Rw2G010940 Rw4G002950 Rw4G002990 Rw4G003000 Rw5G000880 Rw5G000950 Rw5G000960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	204
AccI	GTMKAC	1 cut(s)	678
AccII	CGCG	1 cut(s)	866
AclWI	GGATC	1 cut(s)	819
AcsI	RAATTY	3 cut(s)	141, 714, 1058
AcuI	CTGAAG	1 cut(s)	555
AfaI	GTAC	1 cut(s)	567
AfiI	CCNNNNNNNGG	1 cut(s)	256
AflIII	ACRYGT	1 cut(s)	707
AgeI	ACCGGT	1 cut(s)	740
AgsI	TTSAA	6 cut(s)	502, 765, 842, 919, 951, 1128
AjnI	CCWGG	2 cut(s)	818, 1085
AluBI	AGCT	4 cut(s)	117, 1021, 1039, 1048
AluI	AGCT	4 cut(s)	117, 1021, 1039, 1048
Alw21I	GWGCWC	1 cut(s)	1050
Alw26I	GTCTC	4 cut(s)	27, 397, 528, 833
AlwI	GGATC	1 cut(s)	819
AoxI	GGCC	2 cut(s)	239, 334
ApeKI	GCWGC	2 cut(s)	174, 623
ApoI	RAATTY	3 cut(s)	141, 714, 1058
AsiGI	ACCGGT	1 cut(s)	740
Asp700I	GAANNNNTTC	1 cut(s)	946
AspLEI	GCGC	2 cut(s)	205, 868
AspS9I	GGNCC	3 cut(s)	240, 334, 727
AsuC2I	CCSGG	1 cut(s)	731
AsuHPI	GGTGA	3 cut(s)	56, 172, 755
AvaII	GGWCC	1 cut(s)	727
BaeI	ACNNNNGTAYC	2 cut(s)	557, 590
BanII	GRGCYC	1 cut(s)	1050
BbsI	GAAGAC	1 cut(s)	1008
Bbv12I	GWGCWC	1 cut(s)	1050
BbvCI	CCTCAGC	1 cut(s)	251
BbvI	GCAGC	2 cut(s)	186, 635
BccI	CCATC	5 cut(s)	94, 263, 391, 499, 1106
BciT130I	CCWGG	2 cut(s)	820, 1087
BcnI	CCSGG	1 cut(s)	731
BcoDI	GTCTC	4 cut(s)	27, 397, 528, 833
BfaI	CTAG	3 cut(s)	344, 668, 824
BfmI	CTRYAG	1 cut(s)	1006
BisI	GCNGC	2 cut(s)	175, 624
BlpI	GCTNAGC	1 cut(s)	1049
BlsI	GCNGC	2 cut(s)	176, 625
Bme1390I	CCNGG	3 cut(s)	731, 820, 1087
Bme18I	GGWCC	1 cut(s)	727
BmgT120I	GGNCC	3 cut(s)	240, 334, 727
BmrFI	CCNGG	3 cut(s)	731, 820, 1087
BmsI	GCATC	3 cut(s)	10, 186, 295
BpiI	GAAGAC	1 cut(s)	1008
Bpu10I	CCTNAGC	1 cut(s)	251
Bpu1102I	GCTNAGC	1 cut(s)	1049
BpuEI	CTTGAG	1 cut(s)	628
BpuMI	CCSGG	1 cut(s)	731
Bsa29I	ATCGAT	1 cut(s)	658
BsaI	GGTCTC	1 cut(s)	833
BsaWI	WCCGGW	1 cut(s)	740
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse118I	RCCGGY	1 cut(s)	740
Bse1I	ACTGG	1 cut(s)	300
Bse3DI	GCAATG	1 cut(s)	813
BseBI	CCWGG	2 cut(s)	820, 1087
BseCI	ATCGAT	1 cut(s)	658
BseGI	GGATG	3 cut(s)	127, 286, 739
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseMI	GCAATG	1 cut(s)	813
BseMII	CTCAG	4 cut(s)	151, 265, 590, 1063
BseNI	ACTGG	1 cut(s)	300
BseRI	GAGGAG	1 cut(s)	1020
BseXI	GCAGC	2 cut(s)	186, 635
BseYI	CCCAGC	1 cut(s)	873
Bsh1236I	CGCG	1 cut(s)	866
BshFI	GGCC	2 cut(s)	241, 336
BshTI	ACCGGT	1 cut(s)	740
BshVI	ATCGAT	1 cut(s)	658
BsiHKAI	GWGCWC	1 cut(s)	1050
BsiSI	CCGG	2 cut(s)	730, 741
BslFI	GGGAC	1 cut(s)	862
BslI	CCNNNNNNNGG	1 cut(s)	256
BsmAI	GTCTC	4 cut(s)	27, 397, 528, 833
BsmBI	CGTCTC	2 cut(s)	27, 397
BsmFI	GGGAC	1 cut(s)	862
BsnI	GGCC	2 cut(s)	241, 336
Bso31I	GGTCTC	1 cut(s)	833
Bsp1286I	GDGCHC	1 cut(s)	1050
Bsp143I	GATC	3 cut(s)	230, 611, 811
Bsp1720I	GCTNAGC	1 cut(s)	1049
BspANI	GGCC	2 cut(s)	241, 336
BspCNI	CTCAG	4 cut(s)	150, 264, 591, 1062
BspDI	ATCGAT	1 cut(s)	658
BspFNI	CGCG	1 cut(s)	866
BspHI	TCATGA	2 cut(s)	394, 718
BspMAI	CTGCAG	1 cut(s)	1010
BspPI	GGATC	1 cut(s)	819
BspTNI	GGTCTC	1 cut(s)	833
BsrDI	GCAATG	1 cut(s)	813
BsrFI	RCCGGY	1 cut(s)	740
BsrI	ACTGG	1 cut(s)	300
BssAI	RCCGGY	1 cut(s)	740
BssMI	GATC	3 cut(s)	230, 611, 811
Bst2UI	CCWGG	2 cut(s)	820, 1087
BstC8I	GCNNGC	1 cut(s)	25
BstDEI	CTNAG	5 cut(s)	137, 251, 473, 599, 1049
BstENI	CCTNNNNNAGG	1 cut(s)	254
BstF5I	GGATG	3 cut(s)	127, 286, 739
BstFNI	CGCG	1 cut(s)	866
BstHHI	GCGC	2 cut(s)	205, 868
BstKTI	GATC	3 cut(s)	233, 614, 814
BstMAI	GTCTC	4 cut(s)	27, 397, 528, 833
BstMBI	GATC	3 cut(s)	230, 611, 811
BstMWI	GCNNNNNNNGC	4 cut(s)	353, 623, 874, 1045
BstNI	CCWGG	2 cut(s)	820, 1087
BstNSI	RCATGY	1 cut(s)	711
BstSCI	CCNGG	3 cut(s)	729, 818, 1085
BstSFI	CTRYAG	1 cut(s)	1006
BstUI	CGCG	1 cut(s)	866
BstV1I	GCAGC	2 cut(s)	186, 635
BstV2I	GAAGAC	1 cut(s)	1008
BstX2I	RGATCY	1 cut(s)	811
BstYI	RGATCY	1 cut(s)	811
Bsu15I	ATCGAT	1 cut(s)	658
BsuRI	GGCC	2 cut(s)	241, 336
BsuTUI	ATCGAT	1 cut(s)	658
BtsCI	GGATG	3 cut(s)	127, 286, 739
BtsIMutI	CAGTG	1 cut(s)	596
Cac8I	GCNNGC	1 cut(s)	25
CciI	TCATGA	2 cut(s)	394, 718
CfoI	GCGC	2 cut(s)	205, 868
Cfr10I	RCCGGY	1 cut(s)	740
Cfr13I	GGNCC	3 cut(s)	240, 334, 727
ClaI	ATCGAT	1 cut(s)	658
CseI	GACGC	1 cut(s)	532
Csp6I	GTAC	1 cut(s)	566
CspAI	ACCGGT	1 cut(s)	740
CviAII	CATG	7 cut(s)	387, 395, 692, 708, 719, 895, 1043
CviQI	GTAC	1 cut(s)	566
DdeI	CTNAG	5 cut(s)	137, 251, 473, 599, 1049
DpnI	GATC	3 cut(s)	232, 613, 813
DpnII	GATC	3 cut(s)	230, 611, 811
Ecl136II	GAGCTC	1 cut(s)	1048
Eco24I	GRGCYC	1 cut(s)	1050
Eco31I	GGTCTC	1 cut(s)	833
Eco47I	GGWCC	1 cut(s)	727
Eco53kI	GAGCTC	1 cut(s)	1048
Eco57I	CTGAAG	1 cut(s)	555
EcoICRI	GAGCTC	1 cut(s)	1048
EcoNI	CCTNNNNNAGG	1 cut(s)	254
EcoO109I	RGGNCCY	1 cut(s)	334
EcoRII	CCWGG	2 cut(s)	818, 1085
EcoT22I	ATGCAT	1 cut(s)	288
EcoT38I	GRGCYC	1 cut(s)	1050
Esp3I	CGTCTC	2 cut(s)	27, 397
FaeI	CATG	7 cut(s)	390, 398, 695, 711, 722, 898, 1046
FalI	AAGNNNNNCTT	2 cut(s)	494, 526
FaqI	GGGAC	1 cut(s)	862
FatI	CATG	7 cut(s)	386, 394, 691, 707, 718, 894, 1042
FblI	GTMKAC	1 cut(s)	678
Fnu4HI	GCNGC	2 cut(s)	175, 624
FokI	GGATG	3 cut(s)	134, 273, 746
FriOI	GRGCYC	1 cut(s)	1050
Fsp4HI	GCNGC	2 cut(s)	175, 624
FspBI	CTAG	3 cut(s)	344, 668, 824
FspI	TGCGCA	1 cut(s)	204
GlaI	GCGC	2 cut(s)	204, 867
GluI	GCNGC	2 cut(s)	175, 624
GsaI	CCCAGC	1 cut(s)	877
HaeIII	GGCC	2 cut(s)	241, 336
HapII	CCGG	2 cut(s)	730, 741
HgaI	GACGC	1 cut(s)	532
HhaI	GCGC	2 cut(s)	205, 868
Hin1II	CATG	7 cut(s)	390, 398, 695, 711, 722, 898, 1046
Hin6I	GCGC	2 cut(s)	203, 866
HinP1I	GCGC	2 cut(s)	203, 866
HinfI	GANTC	3 cut(s)	655, 788, 795
HpaII	CCGG	2 cut(s)	730, 741
HphI	GGTGA	3 cut(s)	56, 172, 755
Hpy166II	GTNNAC	3 cut(s)	428, 679, 751
Hpy188I	TCNGA	2 cut(s)	140, 889
Hpy188III	TCNNGA	6 cut(s)	290, 395, 425, 533, 719, 792
Hpy8I	GTNNAC	3 cut(s)	428, 679, 751
HpyAV	CCTTC	5 cut(s)	214, 347, 578, 809, 936
HpyCH4V	TGCA	5 cut(s)	286, 378, 623, 1008, 1148
HpyF10VI	GCNNNNNNNGC	4 cut(s)	353, 623, 874, 1045
HpyF3I	CTNAG	5 cut(s)	137, 251, 473, 599, 1049
Hsp92II	CATG	7 cut(s)	390, 398, 695, 711, 722, 898, 1046
HspAI	GCGC	2 cut(s)	203, 866
Kzo9I	GATC	3 cut(s)	230, 611, 811
LmnI	GCTCC	3 cut(s)	114, 695, 1044
Lsp1109I	GCAGC	2 cut(s)	186, 635
LweI	GCATC	3 cut(s)	10, 186, 295
MaeI	CTAG	3 cut(s)	344, 668, 824
MaeIII	GTNAC	3 cut(s)	124, 153, 736
MalI	GATC	3 cut(s)	232, 613, 813
MboI	GATC	3 cut(s)	230, 611, 811
MboII	GAAGA	3 cut(s)	548, 644, 1013
MfeI	CAATTG	2 cut(s)	560, 618
MflI	RGATCY	1 cut(s)	811
MhlI	GDGCHC	1 cut(s)	1050
MluCI	AATT	9 cut(s)	47, 141, 408, 448, 560, 618, 699, 714, 1058
MmeI	TCCRAC	2 cut(s)	286, 340
Mph1103I	ATGCAT	1 cut(s)	288
MroXI	GAANNNNTTC	1 cut(s)	946
MseI	TTAA	2 cut(s)	5, 833
MslI	CAYNNNNRTG	1 cut(s)	423
MspI	CCGG	2 cut(s)	730, 741
MspR9I	CCNGG	3 cut(s)	731, 820, 1087
MunI	CAATTG	2 cut(s)	560, 618
MvaI	CCWGG	2 cut(s)	820, 1087
MvnI	CGCG	1 cut(s)	866
MwoI	GCNNNNNNNGC	4 cut(s)	353, 623, 874, 1045
NciI	CCSGG	1 cut(s)	731
NdeII	GATC	3 cut(s)	230, 611, 811
NlaIII	CATG	7 cut(s)	390, 398, 695, 711, 722, 898, 1046
NmuCI	GTSAC	1 cut(s)	736
NsbI	TGCGCA	1 cut(s)	204
NsiI	ATGCAT	1 cut(s)	288
NspI	RCATGY	1 cut(s)	711
PagI	TCATGA	2 cut(s)	394, 718
PciI	ACATGT	1 cut(s)	707
PcsI	WCGNNNNNNNCGW	1 cut(s)	799
PdmI	GAANNNNTTC	1 cut(s)	946
PfeI	GAWTC	3 cut(s)	655, 788, 795
PfoI	TCCNGGA	1 cut(s)	729
PinAI	ACCGGT	1 cut(s)	740
PkrI	GCNGC	2 cut(s)	176, 625
PscI	ACATGT	1 cut(s)	707
Psp124BI	GAGCTC	1 cut(s)	1050
Psp6I	CCWGG	2 cut(s)	818, 1085
PspFI	CCCAGC	1 cut(s)	873
PspGI	CCWGG	2 cut(s)	818, 1085
PspPI	GGNCC	3 cut(s)	240, 334, 727
PstI	CTGCAG	1 cut(s)	1010
PsuI	RGATCY	1 cut(s)	811
RsaI	GTAC	1 cut(s)	567
RsaNI	GTAC	1 cut(s)	566
RseI	CAYNNNNRTG	1 cut(s)	423
SacI	GAGCTC	1 cut(s)	1050
SaqAI	TTAA	2 cut(s)	5, 833
SatI	GCNGC	2 cut(s)	175, 624
Sau3AI	GATC	3 cut(s)	230, 611, 811
Sau96I	GGNCC	3 cut(s)	240, 334, 727
ScrFI	CCNGG	3 cut(s)	731, 820, 1087
SduI	GDGCHC	1 cut(s)	1050
SfaNI	GCATC	3 cut(s)	10, 186, 295
SfcI	CTRYAG	1 cut(s)	1006
SinI	GGWCC	1 cut(s)	727
SmiMI	CAYNNNNRTG	1 cut(s)	423
SmlI	CTYRAG	1 cut(s)	643
SmoI	CTYRAG	1 cut(s)	643
Sse9I	AATT	9 cut(s)	47, 141, 408, 448, 560, 618, 699, 714, 1058
SspMI	CTAG	3 cut(s)	344, 668, 824
SstI	GAGCTC	1 cut(s)	1050
StyD4I	CCNGG	3 cut(s)	729, 818, 1085
TaqI	TCGA	3 cut(s)	658, 793, 802
TasI	AATT	9 cut(s)	47, 141, 408, 448, 560, 618, 699, 714, 1058
TfiI	GAWTC	3 cut(s)	655, 788, 795
Tru1I	TTAA	2 cut(s)	5, 833
Tru9I	TTAA	2 cut(s)	5, 833
TscAI	CASTG	1 cut(s)	603
TseFI	GTSAC	1 cut(s)	736
TseI	GCWGC	2 cut(s)	174, 623
Tsp45I	GTSAC	1 cut(s)	736
TspDTI	ATGAA	6 cut(s)	81, 411, 498, 707, 903, 911
TspRI	CASTG	1 cut(s)	603
VpaK11BI	GGWCC	1 cut(s)	727
XagI	CCTNNNNNAGG	1 cut(s)	254
XapI	RAATTY	3 cut(s)	141, 714, 1058
XceI	RCATGY	1 cut(s)	711
XcmI	CCANNNNNNNNNTGG	1 cut(s)	559
XmiI	GTMKAC	1 cut(s)	678
XmnI	GAANNNNTTC	1 cut(s)	946
XspI	CTAG	3 cut(s)	344, 668, 824
Zsp2I	ATGCAT	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.