pycom10g28240

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
28909858 .. 28910274
417 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g28240.1

Sequence Viewer

Length: 417 bp
ATGGGCATCCTATCAAGTCTCAGCAATCTCAAAGTCCTTACCATTGATGCTGAAGACTGTAAAGAACGGGAAACTTTGGTAAAGTTAGACGGGCTTAAAATGCCTCCAAATCTCAGGGAGCTGTATGTAAGGAATTATCATTCCAACACAATGCCCAACTGGTTTCATCCGAATGTGCTTTCTGAATTGCAGTATCTCTGTGTTGAGAATTGTGACATTATGAAACTGACCAGTGATCAGTCCACTTGGAAACATGTTGAGGGTTTGTGTTTGAAGTTGCTGAACTATGAGGAAGATGGGGAGAACTTGATGAAAATTATGCCTGCACTCCGCTACATGGAGATTAGCCATTGTTCAAGGTTCAAAAATCTTCCCCGCGAGGTTGAAGAGCAAGGAGTTTGGAGAAAGCAAAATTGA

Protein Analysis

139

Amino Acids

16.23

Weight (kDa)

5.81

Isoelectric Point (pI)

46.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 3 - 69 1.3e-06 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 18 - 77 6.6e-10 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000540)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50950 AT3G50950
fragaria_vesca FvH4_1g12710 FvH4_1g12710 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820
malus_domestica MD02G1141100.v1.1 MD10G1333100.v1.1
prunus_persica Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.6G150700_v2.0.a1 Prupe.7G160100_v2.0.a1 Prupe.7G160100_v2.0.a1
pyrus_communis pycom02g11110 pycom10g28240 pycom10g28340 pycom10g28360 pycom10g28450
rosa_chinensis RchiOBHm_Chr2g0100711 RchiOBHm_Chr3g0485861 RchiOBHm_Chr4g0391451 RchiOBHm_Chr4g0391591 RchiOBHm_Chr4g0391601 RchiOBHm_Chr4g0391681 RchiOBHm_Chr5g0001141 RchiOBHm_Chr5g0001221
rosa_laevigata RLG00000017001
rosa_multiflora Rmu_co8260007.1_g000001 Rmu_co8260103.1_g000001 Rmu_co8519155.1_g000001 Rmu_sc0000060.1_g000050 Rmu_sc0000255.1_g000036 Rmu_sc0001174.1_g000023 Rmu_sc0001174.1_g000025 Rmu_sc0001659.1_g000009 Rmu_sc0001706.1_g000009 Rmu_sc0001706.1_g000024 Rmu_sc0001706.1_g000035 Rmu_sc0004189.1_g000018 Rmu_sc0004189.1_g000030 Rmu_sc0004862.1_g000002 Rmu_sc0004876.1_g000038 Rmu_sc0023741.1_g000004
rosa_roxburghii Rroxscaffold_1G00075100 Rroxscaffold_1G00075160 Rroxscaffold_1G00075210 Rroxscaffold_5G00337160 Rroxscaffold_5G00386590 Rroxscaffold_6G00396300
rosa_rugosa Rorug03G0336200 Rorug03G0336300 Rorug04G0389400
rosa_samantha Rh2AG140400 Rh2BG144100 Rh2CG145400 Rh2DG144900 Rh3AG271200 Rh4AG038000 Rh4AG038700 Rh4BG032000 Rh4BG032800 Rh4CG041100 Rh4CG041300 Rh4DG035500 Rh4DG035600 Rh5AG008800 Rh5AG009100 Rh5BG010900 Rh5BG011500 Rh5BG011600 Rh5BG012000 Rh5CG009400 Rh5CG010000 Rh5DG009800
rosa_wichuraiana Rw2G010940 Rw4G002950 Rw4G002990 Rw4G003000 Rw5G000880 Rw5G000950 Rw5G000960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 378
AciI CCGC 2 cut(s) 331, 376
AcuI CTGAAG 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 337
AflIII ACRYGT 1 cut(s) 253
AgsI TTSAA 4 cut(s) 274, 357, 364, 386
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
Alw26I GTCTC 1 cut(s) 23
BbsI GAAGAC 1 cut(s) 60
BccI CCATC 1 cut(s) 290
BclI TGATCA 1 cut(s) 235
BcoDI GTCTC 1 cut(s) 23
BmsI GCATC 2 cut(s) 15, 37
BpiI GAAGAC 1 cut(s) 60
Bsc4I CCNNNNNNNGG 1 cut(s) 337
Bse1I ACTGG 2 cut(s) 164, 231
BseGI GGATG 2 cut(s) 6, 166
BseLI CCNNNNNNNGG 1 cut(s) 337
BseMII CTCAG 2 cut(s) 34, 127
BseNI ACTGG 2 cut(s) 164, 231
BsgI GTGCAG 1 cut(s) 309
Bsh1236I CGCG 1 cut(s) 378
BslI CCNNNNNNNGG 1 cut(s) 337
BsmAI GTCTC 1 cut(s) 23
Bsp143I GATC 1 cut(s) 235
BspACI CCGC 2 cut(s) 331, 376
BspCNI CTCAG 2 cut(s) 33, 126
BspFNI CGCG 1 cut(s) 378
BspQI GCTCTTC 1 cut(s) 381
BsrI ACTGG 2 cut(s) 164, 231
BssMI GATC 1 cut(s) 235
Bst4CI ACNGT 1 cut(s) 59
Bst6I CTCTTC 1 cut(s) 381
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 2 cut(s) 20, 113
BstF5I GGATG 2 cut(s) 6, 166
BstFNI CGCG 1 cut(s) 378
BstKTI GATC 1 cut(s) 238
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 1 cut(s) 235
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstNSI RCATGY 1 cut(s) 257
BstUI CGCG 1 cut(s) 378
BstV2I GAAGAC 1 cut(s) 60
BtsCI GGATG 2 cut(s) 6, 166
BtsIMutI CAGTG 1 cut(s) 238
Cac8I GCNNGC 1 cut(s) 324
CviAII CATG 2 cut(s) 254, 337
CviJI RGCY 3 cut(s) 94, 121, 348
CviKI_1 RGCY 3 cut(s) 94, 121, 348
DdeI CTNAG 2 cut(s) 20, 113
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
Eam1104I CTCTTC 1 cut(s) 381
EarI CTCTTC 1 cut(s) 381
Eco57I CTGAAG 1 cut(s) 72
FaeI CATG 2 cut(s) 257, 340
FaiI YATR 6 cut(s) 126, 221, 255, 288, 320, 338
FatI CATG 2 cut(s) 253, 336
FauI CCCGC 1 cut(s) 383
FbaI TGATCA 1 cut(s) 235
FokI GGATG 1 cut(s) 153
Hin1II CATG 2 cut(s) 257, 340
Hpy166II GTNNAC 1 cut(s) 243
Hpy188I TCNGA 2 cut(s) 171, 184
Hpy8I GTNNAC 1 cut(s) 243
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4V TGCA 2 cut(s) 190, 326
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpyF3I CTNAG 2 cut(s) 20, 113
Hsp92II CATG 2 cut(s) 257, 340
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 1 cut(s) 235
LguI GCTCTTC 1 cut(s) 381
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 4 cut(s) 100, 145, 244, 336
LweI GCATC 2 cut(s) 15, 37
MaeIII GTNAC 1 cut(s) 212
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MboII GAAGA 4 cut(s) 65, 305, 362, 398
MluCI AATT 5 cut(s) 133, 185, 208, 315, 412
MmeI TCCRAC 1 cut(s) 168
MnlI CCTC 4 cut(s) 114, 253, 283, 373
MseI TTAA 1 cut(s) 96
MslI CAYNNNNRTG 1 cut(s) 171
MvnI CGCG 1 cut(s) 378
MwoI GCNNNNNNNGC 1 cut(s) 100
NdeII GATC 1 cut(s) 235
NlaIII CATG 2 cut(s) 257, 340
NmuCI GTSAC 1 cut(s) 212
NspI RCATGY 1 cut(s) 257
PciI ACATGT 1 cut(s) 253
PciSI GCTCTTC 1 cut(s) 381
PscI ACATGT 1 cut(s) 253
RseI CAYNNNNRTG 1 cut(s) 171
SapI GCTCTTC 1 cut(s) 381
SaqAI TTAA 1 cut(s) 96
Sau3AI GATC 1 cut(s) 235
SetI ASST 3 cut(s) 123, 362, 384
SfaNI GCATC 2 cut(s) 15, 37
SmiMI CAYNNNNRTG 1 cut(s) 171
Sse9I AATT 5 cut(s) 133, 185, 208, 315, 412
SsiI CCGC 2 cut(s) 331, 376
TaaI ACNGT 1 cut(s) 59
TasI AATT 5 cut(s) 133, 185, 208, 315, 412
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 1 cut(s) 238
TseFI GTSAC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 3 cut(s) 155, 236, 326
TspRI CASTG 1 cut(s) 238
XceI RCATGY 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.