pycom10g28360

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
28968126 .. 28968716
591 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g28360.1

Sequence Viewer

Length: 591 bp
ATGAAGGACTGGCTTGGAAAAATGAATTGCTTAGTTGTCGACGCAGACAAGAAACTGAAACTGTCGTCTGAACAGGAAACGGTCAAGAAATATTTGGGTGAGCTAAGGGAAGTGATTTATGAAGCTGACAACGCATTGACGGATTGCCTGATCAGAGAGGAAGAAAAGAAGAAAAAGACGTTCTTCTCATGCTTGTTGCCTCTGGAGCCGGTTTTCCCGTATCAGATGGGCAGGAGGTTGACGAACATTAATTCTGATATGAAGAAGGTGCACGACGAGTTGGTCAAGTATTTGAGTGCATCAGCTGCTGCACCAGATAGTATGAGCCAACACATCATCAGCAGCAGGCCATTTGTTGGTTCACTAAACCCACATAAGACATATGGATTGGATGGGGACATAGAAGAGTTGAAAGGGTGGATACTTAAAGACGACGAGAAGGAACCAGCAATGAACTACATTGGCATTGTGGGGATGGGGGGCCTGGGCAAAACCACCCTTGCTCAACAACTCTTTAACGATTCTCAAATCTTGGATCACTTTGAAAAGACAATGTGGGTGTGTGTTTCCGGAAATTTCTGCGAGCAGTGA

Protein Analysis

197

Amino Acids

22.24

Weight (kDa)

5.46

Isoelectric Point (pI)

47.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 1 - 61 2.6e-07 Rx N-terminal domain
NB-ARC PF00931 132 - 194 2.3e-14 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000540)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50950 AT3G50950
fragaria_vesca FvH4_1g12710 FvH4_1g12710 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820
malus_domestica MD02G1141100.v1.1 MD10G1333100.v1.1
prunus_persica Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.6G150700_v2.0.a1 Prupe.7G160100_v2.0.a1 Prupe.7G160100_v2.0.a1
pyrus_communis pycom02g11110 pycom10g28240 pycom10g28340 pycom10g28360 pycom10g28450
rosa_chinensis RchiOBHm_Chr2g0100711 RchiOBHm_Chr3g0485861 RchiOBHm_Chr4g0391451 RchiOBHm_Chr4g0391591 RchiOBHm_Chr4g0391601 RchiOBHm_Chr4g0391681 RchiOBHm_Chr5g0001141 RchiOBHm_Chr5g0001221
rosa_laevigata RLG00000017001
rosa_multiflora Rmu_co8260007.1_g000001 Rmu_co8260103.1_g000001 Rmu_co8519155.1_g000001 Rmu_sc0000060.1_g000050 Rmu_sc0000255.1_g000036 Rmu_sc0001174.1_g000023 Rmu_sc0001174.1_g000025 Rmu_sc0001659.1_g000009 Rmu_sc0001706.1_g000009 Rmu_sc0001706.1_g000024 Rmu_sc0001706.1_g000035 Rmu_sc0004189.1_g000018 Rmu_sc0004189.1_g000030 Rmu_sc0004862.1_g000002 Rmu_sc0004876.1_g000038 Rmu_sc0023741.1_g000004
rosa_roxburghii Rroxscaffold_1G00075100 Rroxscaffold_1G00075160 Rroxscaffold_1G00075210 Rroxscaffold_5G00337160 Rroxscaffold_5G00386590 Rroxscaffold_6G00396300
rosa_rugosa Rorug03G0336200 Rorug03G0336300 Rorug04G0389400
rosa_samantha Rh2AG140400 Rh2BG144100 Rh2CG145400 Rh2DG144900 Rh3AG271200 Rh4AG038000 Rh4AG038700 Rh4BG032000 Rh4BG032800 Rh4CG041100 Rh4CG041300 Rh4DG035500 Rh4DG035600 Rh5AG008800 Rh5AG009100 Rh5BG010900 Rh5BG011500 Rh5BG011600 Rh5BG012000 Rh5CG009400 Rh5CG010000 Rh5DG009800
rosa_wichuraiana Rw2G010940 Rw4G002950 Rw4G002990 Rw4G003000 Rw5G000880 Rw5G000950 Rw5G000960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 281
AccB7I CCANNNNNTGG 1 cut(s) 356
AccI GTMKAC 1 cut(s) 39
AccIII TCCGGA 1 cut(s) 569
AclWI GGATC 1 cut(s) 543
AcsI RAATTY 1 cut(s) 574
AfiI CCNNNNNNNGG 1 cut(s) 356
AgsI TTSAA 2 cut(s) 412, 545
AjnI CCWGG 1 cut(s) 483
AluBI AGCT 3 cut(s) 103, 125, 305
AluI AGCT 3 cut(s) 103, 125, 305
Alw21I GWGCWC 1 cut(s) 273
Alw44I GTGCAC 1 cut(s) 269
AlwI GGATC 1 cut(s) 543
AlwNI CAGNNNCTG 1 cut(s) 308
Aor13HI TCCGGA 1 cut(s) 569
AoxI GGCC 2 cut(s) 347, 481
ApaLI GTGCAC 1 cut(s) 269
ApeKI GCWGC 3 cut(s) 305, 308, 342
ApoI RAATTY 1 cut(s) 574
AseI ATTAAT 1 cut(s) 249
AspS9I GGNCC 1 cut(s) 481
AsuHPI GGTGA 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 273
Bbv12I GWGCWC 1 cut(s) 273
BbvI GCAGC 3 cut(s) 292, 295, 354
BccI CCATC 3 cut(s) 220, 386, 469
BciT130I CCWGG 1 cut(s) 485
BciVI GTATCC 1 cut(s) 414
BclI TGATCA 1 cut(s) 150
BfuI GTATCC 1 cut(s) 414
BisI GCNGC 3 cut(s) 306, 309, 343
BlsI GCNGC 3 cut(s) 307, 310, 344
Bme1390I CCNGG 1 cut(s) 485
BmgT120I GGNCC 1 cut(s) 481
BmiI GGNNCC 3 cut(s) 207, 444, 482
BmrFI CCNGG 1 cut(s) 485
BmsI GCATC 1 cut(s) 308
BpmI CTGGAG 1 cut(s) 224
Bpu10I CCTNAGC 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 484
BsaWI WCCGGW 1 cut(s) 569
Bsc4I CCNNNNNNNGG 1 cut(s) 356
Bse118I RCCGGY 1 cut(s) 208
Bse1I ACTGG 1 cut(s) 14
Bse3DI GCAATG 1 cut(s) 456
BseAI TCCGGA 1 cut(s) 569
BseBI CCWGG 1 cut(s) 485
BseDI CCNNGG 1 cut(s) 484
BseGI GGATG 2 cut(s) 397, 480
BseLI CCNNNNNNNGG 1 cut(s) 356
BseMI GCAATG 1 cut(s) 456
BseNI ACTGG 1 cut(s) 14
BseSI GKGCMC 1 cut(s) 273
BseXI GCAGC 3 cut(s) 292, 295, 354
BsgI GTGCAG 1 cut(s) 294
BshFI GGCC 2 cut(s) 349, 483
BsiHKAI GWGCWC 1 cut(s) 273
BsiSI CCGG 2 cut(s) 209, 570
BslFI GGGAC 1 cut(s) 410
BslI CCNNNNNNNGG 1 cut(s) 356
BsmFI GGGAC 1 cut(s) 410
BsnI GGCC 2 cut(s) 349, 483
Bsp1286I GDGCHC 1 cut(s) 273
Bsp13I TCCGGA 1 cut(s) 569
Bsp143I GATC 2 cut(s) 150, 535
BspANI GGCC 2 cut(s) 349, 483
BspEI TCCGGA 1 cut(s) 569
BspLI GGNNCC 3 cut(s) 207, 444, 482
BspPI GGATC 1 cut(s) 543
BsrDI GCAATG 1 cut(s) 456
BsrFI RCCGGY 1 cut(s) 208
BsrI ACTGG 1 cut(s) 14
BssAI RCCGGY 1 cut(s) 208
BssECI CCNNGG 1 cut(s) 484
BssMI GATC 2 cut(s) 150, 535
Bst2UI CCWGG 1 cut(s) 485
Bst4CI ACNGT 2 cut(s) 63, 82
Bst6I CTCTTC 1 cut(s) 399
BstAPI GCANNNNNTGC 1 cut(s) 305
BstC8I GCNNGC 2 cut(s) 347, 584
BstDEI CTNAG 2 cut(s) 31, 104
BstF5I GGATG 2 cut(s) 397, 480
BstKTI GATC 2 cut(s) 153, 538
BstMBI GATC 2 cut(s) 150, 535
BstMWI GCNNNNNNNGC 3 cut(s) 131, 205, 305
BstNI CCWGG 1 cut(s) 485
BstSCI CCNGG 1 cut(s) 483
BstSLI GKGCMC 1 cut(s) 273
BstV1I GCAGC 3 cut(s) 292, 295, 354
BsuI GTATCC 1 cut(s) 414
BsuRI GGCC 2 cut(s) 349, 483
BtsCI GGATG 2 cut(s) 397, 480
Cac8I GCNNGC 2 cut(s) 347, 584
CaiI CAGNNNCTG 1 cut(s) 308
Cfr10I RCCGGY 1 cut(s) 208
Cfr13I GGNCC 1 cut(s) 481
CseI GACGC 1 cut(s) 50
CviAII CATG 1 cut(s) 189
CviJI RGCY 8 cut(s) 13, 103, 125, 208, 305, 327, 349, 483
CviKI_1 RGCY 8 cut(s) 13, 103, 125, 208, 305, 327, 349, 483
DdeI CTNAG 2 cut(s) 31, 104
DpnI GATC 2 cut(s) 152, 537
DpnII GATC 2 cut(s) 150, 535
DrdI GACNNNNNNGTC 1 cut(s) 281
DseDI GACNNNNNNGTC 1 cut(s) 281
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
EcoO109I RGGNCCY 1 cut(s) 481
EcoRII CCWGG 1 cut(s) 483
FaeI CATG 1 cut(s) 192
FaiI YATR 8 cut(s) 120, 190, 260, 323, 375, 382, 384, 401
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FaqI GGGAC 1 cut(s) 410
FatI CATG 1 cut(s) 188
FauNDI CATATG 1 cut(s) 382
FbaI TGATCA 1 cut(s) 150
FblI GTMKAC 1 cut(s) 39
Fnu4HI GCNGC 3 cut(s) 306, 309, 343
FokI GGATG 2 cut(s) 404, 487
Fsp4HI GCNGC 3 cut(s) 306, 309, 343
GluI GCNGC 3 cut(s) 306, 309, 343
GsuI CTGGAG 1 cut(s) 224
HaeIII GGCC 2 cut(s) 349, 483
HapII CCGG 2 cut(s) 209, 570
HgaI GACGC 1 cut(s) 50
Hin1II CATG 1 cut(s) 192
HincII GTYRAC 2 cut(s) 40, 240
HindII GTYRAC 2 cut(s) 40, 240
HinfI GANTC 1 cut(s) 521
HpaII CCGG 2 cut(s) 209, 570
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 4 cut(s) 40, 240, 271, 362
Hpy188I TCNGA 4 cut(s) 70, 155, 225, 256
Hpy188III TCNNGA 3 cut(s) 85, 203, 570
Hpy8I GTNNAC 4 cut(s) 40, 240, 271, 362
Hpy99I CGWCG 3 cut(s) 44, 278, 437
HpyAV CCTTC 2 cut(s) 259, 433
HpyCH4III ACNGT 2 cut(s) 63, 82
HpyCH4IV ACGT 1 cut(s) 179
HpyCH4V TGCA 3 cut(s) 271, 299, 311
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 205, 305
HpyF3I CTNAG 2 cut(s) 31, 104
HpySE526I ACGT 1 cut(s) 179
Hsp92II CATG 1 cut(s) 192
Kpn2I TCCGGA 1 cut(s) 569
Ksp22I TGATCA 1 cut(s) 150
Kzo9I GATC 2 cut(s) 150, 535
LmnI GCTCC 1 cut(s) 205
Lsp1109I GCAGC 3 cut(s) 292, 295, 354
LweI GCATC 1 cut(s) 308
MaeII ACGT 1 cut(s) 179
MalI GATC 2 cut(s) 152, 537
MboI GATC 2 cut(s) 150, 535
MboII GAAGA 5 cut(s) 173, 175, 181, 274, 416
MhlI GDGCHC 1 cut(s) 273
MluCI AATT 3 cut(s) 25, 250, 574
MnlI CCTC 3 cut(s) 151, 210, 228
MroI TCCGGA 1 cut(s) 569
MseI TTAA 3 cut(s) 249, 426, 516
MspA1I CMGCKG 1 cut(s) 305
MspI CCGG 2 cut(s) 209, 570
MspR9I CCNGG 1 cut(s) 485
MvaI CCWGG 1 cut(s) 485
MwoI GCNNNNNNNGC 3 cut(s) 131, 205, 305
NdeI CATATG 1 cut(s) 382
NdeII GATC 2 cut(s) 150, 535
NlaIII CATG 1 cut(s) 192
NlaIV GGNNCC 3 cut(s) 207, 444, 482
PfeI GAWTC 1 cut(s) 521
PflMI CCANNNNNTGG 1 cut(s) 356
PkrI GCNGC 3 cut(s) 307, 310, 344
PshBI ATTAAT 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 483
PspGI CCWGG 1 cut(s) 483
PspN4I GGNNCC 3 cut(s) 207, 444, 482
PspPI GGNCC 1 cut(s) 481
PstNI CAGNNNCTG 1 cut(s) 308
PvuII CAGCTG 1 cut(s) 305
SalI GTCGAC 1 cut(s) 38
SaqAI TTAA 3 cut(s) 249, 426, 516
SatI GCNGC 3 cut(s) 306, 309, 343
Sau3AI GATC 2 cut(s) 150, 535
Sau96I GGNCC 1 cut(s) 481
ScrFI CCNGG 1 cut(s) 485
SduI GDGCHC 1 cut(s) 273
SetI ASST 6 cut(s) 105, 127, 182, 239, 270, 307
SfaNI GCATC 1 cut(s) 308
Sse9I AATT 3 cut(s) 25, 250, 574
SspI AATATT 1 cut(s) 92
StyD4I CCNGG 1 cut(s) 483
TaaI ACNGT 2 cut(s) 63, 82
TaiI ACGT 1 cut(s) 182
TaqI TCGA 1 cut(s) 39
TasI AATT 3 cut(s) 25, 250, 574
TfiI GAWTC 1 cut(s) 521
Tru1I TTAA 3 cut(s) 249, 426, 516
Tru9I TTAA 3 cut(s) 249, 426, 516
TseI GCWGC 3 cut(s) 305, 308, 342
TspDTI ATGAA 5 cut(s) 17, 38, 135, 275, 467
TspGWI ACGGA 1 cut(s) 155
Van91I CCANNNNNTGG 1 cut(s) 356
VneI GTGCAC 1 cut(s) 269
VspI ATTAAT 1 cut(s) 249
XapI RAATTY 1 cut(s) 574
XmiI GTMKAC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.