Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000540

Physical Location & Seq

Genomic Coordinates Reverse (-)

39484061 .. 39485665

Gene Structure 1605 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0336200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGGGATATACGAGGTGGTGATGGAGGAGATAACGGTGTACACGGGGCTATCACCGGCGGCGTTTTTCACAATCGCTGGGATGATGGTCGTCGTTTACAGATATGTTACCGGAATGTTTGTGGCTCCCGAAGATTACAACAAGCCTCCGGTGGTGAGTAGTGCTAATTCGGAATTGGCGAACAAGTATTTCAATCCCACGACCGCCACGACACCAAGCTCAATCCAAGTCGGGGATATGACGGAGCAAGAGCTTAGAGGATATGATGGGTCTGACCCCAATAAGCCCCTTCTCATGGCCATCAAAGCTCAGATCTACGACGTCTCCTCCTCCAGGAACTTCTATGGTCCTGGTGGACCGTATGCAATGTTTGCTGGAAGGGATGCTAGCAGAGCCTTGGCTCTTCTGTCTTTCAAACCCCAAGACATAAACGGAAACATCGATGGCCTCGGTCCCGACGAGCTTCAGATTTTACAGGACTGGGAAGATAAATTCGTTGAAAAATATCTCAAGGTTGGACGGCTGCTTAACCGTGATCCTGTGCCACAACCAACACAAGAGACTAGGCAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0023052 GO:0042742 GO:0043207 GO:0043621 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

191

Amino Acids

21.14

Weight (kDa)

4.63

Isoelectric Point (pI)

46.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyt-b5	PF00173	81 - 174	1.6e-09	Cytochrome b5-like Heme/Steroid binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50950 AT3G50950
fragaria_vesca	FvH4_1g12710 FvH4_1g12710 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820
malus_domestica	MD02G1141100.v1.1 MD10G1333100.v1.1
prunus_persica	Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.6G150700_v2.0.a1 Prupe.7G160100_v2.0.a1 Prupe.7G160100_v2.0.a1
pyrus_communis	pycom02g11110 pycom10g28240 pycom10g28340 pycom10g28360 pycom10g28450
rosa_chinensis	RchiOBHm_Chr2g0100711 RchiOBHm_Chr3g0485861 RchiOBHm_Chr4g0391451 RchiOBHm_Chr4g0391591 RchiOBHm_Chr4g0391601 RchiOBHm_Chr4g0391681 RchiOBHm_Chr5g0001141 RchiOBHm_Chr5g0001221
rosa_laevigata	RLG00000017001
rosa_multiflora	Rmu_co8260007.1_g000001 Rmu_co8260103.1_g000001 Rmu_co8519155.1_g000001 Rmu_sc0000060.1_g000050 Rmu_sc0000255.1_g000036 Rmu_sc0001174.1_g000023 Rmu_sc0001174.1_g000025 Rmu_sc0001659.1_g000009 Rmu_sc0001706.1_g000009 Rmu_sc0001706.1_g000024 Rmu_sc0001706.1_g000035 Rmu_sc0004189.1_g000018 Rmu_sc0004189.1_g000030 Rmu_sc0004862.1_g000002 Rmu_sc0004876.1_g000038 Rmu_sc0023741.1_g000004
rosa_roxburghii	Rroxscaffold_1G00075100 Rroxscaffold_1G00075160 Rroxscaffold_1G00075210 Rroxscaffold_5G00337160 Rroxscaffold_5G00386590 Rroxscaffold_6G00396300
rosa_rugosa	Rorug03G0336200 Rorug03G0336300 Rorug04G0389400
rosa_samantha	Rh2AG140400 Rh2BG144100 Rh2CG145400 Rh2DG144900 Rh3AG271200 Rh4AG038000 Rh4AG038700 Rh4BG032000 Rh4BG032800 Rh4CG041100 Rh4CG041300 Rh4DG035500 Rh4DG035600 Rh5AG008800 Rh5AG009100 Rh5BG010900 Rh5BG011500 Rh5BG011600 Rh5BG012000 Rh5CG009400 Rh5CG010000 Rh5DG009800
rosa_wichuraiana	Rw2G010940 Rw4G002950 Rw4G002990 Rw4G003000 Rw5G000880 Rw5G000950 Rw5G000960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	324
AciI	CCGC	2 cut(s)	59, 204
AclWI	GGATC	1 cut(s)	530
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	1 cut(s)	491
AcuI	CTGAAG	1 cut(s)	449
AcyI	GRCGYC	1 cut(s)	321
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	3 cut(s)	232, 295, 333
AgsI	TTSAA	3 cut(s)	193, 415, 500
AjnI	CCWGG	2 cut(s)	332, 349
AluBI	AGCT	4 cut(s)	219, 253, 308, 463
AluI	AGCT	4 cut(s)	219, 253, 308, 463
Alw26I	GTCTC	2 cut(s)	328, 554
AlwI	GGATC	1 cut(s)	530
AoxI	GGCC	2 cut(s)	297, 445
ApeKI	GCWGC	1 cut(s)	523
ApoI	RAATTY	1 cut(s)	491
AspS9I	GGNCC	3 cut(s)	347, 356, 452
AsuHPI	GGTGA	3 cut(s)	31, 45, 166
AsuNHI	GCTAGC	1 cut(s)	386
AvaII	GGWCC	3 cut(s)	347, 356, 452
BalI	TGGCCA	1 cut(s)	299
BbvI	GCAGC	1 cut(s)	510
BccI	CCATC	5 cut(s)	16, 79, 260, 308, 437
BceAI	ACGGC	1 cut(s)	536
BciT130I	CCWGG	2 cut(s)	334, 351
BcoDI	GTCTC	2 cut(s)	328, 554
BfaI	CTAG	2 cut(s)	387, 564
BglII	AGATCT	1 cut(s)	312
BisI	GCNGC	2 cut(s)	60, 524
BlsI	GCNGC	2 cut(s)	61, 525
Bme1390I	CCNGG	2 cut(s)	334, 351
Bme18I	GGWCC	3 cut(s)	347, 356, 452
BmgT120I	GGNCC	3 cut(s)	347, 356, 452
BmiI	GGNNCC	2 cut(s)	126, 454
BmrFI	CCNGG	2 cut(s)	334, 351
BmrI	ACTGGG	1 cut(s)	490
BmsI	GCATC	1 cut(s)	373
BmtI	GCTAGC	1 cut(s)	390
BmuI	ACTGGG	1 cut(s)	490
BpmI	CTGGAG	1 cut(s)	316
BpuEI	CTTGAG	1 cut(s)	494
Bsa29I	ATCGAT	1 cut(s)	441
BsaHI	GRCGYC	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	396, 448
BsaWI	WCCGGW	2 cut(s)	110, 148
BsaXI	ACNNNNNCTCC	4 cut(s)	308, 311, 338, 341
Bsc4I	CCNNNNNNNGG	3 cut(s)	232, 295, 333
Bse118I	RCCGGY	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	485
Bse3DI	GCAATG	1 cut(s)	372
BseBI	CCWGG	2 cut(s)	334, 351
BseCI	ATCGAT	1 cut(s)	441
BseDI	CCNNGG	2 cut(s)	396, 448
BseGI	GGATG	2 cut(s)	87, 388
BseLI	CCNNNNNNNGG	3 cut(s)	232, 295, 333
BseMI	GCAATG	1 cut(s)	372
BseMII	CTCAG	1 cut(s)	323
BseNI	ACTGG	1 cut(s)	485
BseRI	GAGGAG	3 cut(s)	41, 316, 319
BseXI	GCAGC	1 cut(s)	510
BseYI	CCCAGC	1 cut(s)	77
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	2 cut(s)	299, 447
BshVI	ATCGAT	1 cut(s)	441
BsiEI	CGRYCG	1 cut(s)	204
BsiSI	CCGG	3 cut(s)	56, 111, 149
BslFI	GGGAC	1 cut(s)	438
BslI	CCNNNNNNNGG	3 cut(s)	232, 295, 333
BsmAI	GTCTC	2 cut(s)	328, 554
BsmBI	CGTCTC	1 cut(s)	328
BsmFI	GGGAC	1 cut(s)	438
BsnI	GGCC	2 cut(s)	299, 447
Bsp1407I	TGTACA	1 cut(s)	39
Bsp143I	GATC	2 cut(s)	312, 535
BspACI	CCGC	2 cut(s)	59, 204
BspANI	GGCC	2 cut(s)	299, 447
BspCNI	CTCAG	1 cut(s)	322
BspDI	ATCGAT	1 cut(s)	441
BspLI	GGNNCC	2 cut(s)	126, 454
BspOI	GCTAGC	1 cut(s)	390
BspPI	GGATC	1 cut(s)	530
BspQI	GCTCTTC	1 cut(s)	408
BsrDI	GCAATG	1 cut(s)	372
BsrFI	RCCGGY	1 cut(s)	55
BsrGI	TGTACA	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	485
BssAI	RCCGGY	1 cut(s)	55
BssECI	CCNNGG	2 cut(s)	396, 448
BssMI	GATC	2 cut(s)	312, 535
BssNI	GRCGYC	1 cut(s)	321
BssT1I	CCWWGG	1 cut(s)	396
Bst2UI	CCWGG	2 cut(s)	334, 351
Bst4CI	ACNGT	3 cut(s)	37, 360, 533
Bst6I	CTCTTC	1 cut(s)	408
BstACI	GRCGYC	1 cut(s)	321
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstAUI	TGTACA	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	388
BstDEI	CTNAG	2 cut(s)	254, 309
BstENI	CCTNNNNNAGG	1 cut(s)	331
BstF5I	GGATG	2 cut(s)	87, 388
BstKTI	GATC	2 cut(s)	315, 538
BstMAI	GTCTC	2 cut(s)	328, 554
BstMBI	GATC	2 cut(s)	312, 535
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	3 cut(s)	305, 371, 392
BstNI	CCWGG	2 cut(s)	334, 351
BstSCI	CCNGG	2 cut(s)	332, 349
BstV1I	GCAGC	1 cut(s)	510
BstX2I	RGATCY	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	312
Bsu15I	ATCGAT	1 cut(s)	441
BsuRI	GGCC	2 cut(s)	299, 447
BsuTUI	ATCGAT	1 cut(s)	441
BtsCI	GGATG	2 cut(s)	87, 388
Cac8I	GCNNGC	1 cut(s)	388
Cfr10I	RCCGGY	1 cut(s)	55
Cfr13I	GGNCC	3 cut(s)	347, 356, 452
ClaI	ATCGAT	1 cut(s)	441
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	1 cut(s)	295
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	2 cut(s)	254, 309
DpnI	GATC	2 cut(s)	314, 537
DpnII	GATC	2 cut(s)	312, 535
EaeI	YGGCCR	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Eco130I	CCWWGG	1 cut(s)	396
Eco47I	GGWCC	3 cut(s)	347, 356, 452
Eco57I	CTGAAG	1 cut(s)	449
EcoNI	CCTNNNNNAGG	1 cut(s)	331
EcoRII	CCWGG	2 cut(s)	332, 349
EcoT14I	CCWWGG	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	396
Esp3I	CGTCTC	1 cut(s)	328
FaeI	CATG	1 cut(s)	298
FaiI	YATR	8 cut(s)	10, 105, 239, 264, 296, 345, 363, 428
FaqI	GGGAC	1 cut(s)	438
FatI	CATG	1 cut(s)	294
Fnu4HI	GCNGC	2 cut(s)	60, 524
FokI	GGATG	2 cut(s)	94, 395
Fsp4HI	GCNGC	2 cut(s)	60, 524
FspBI	CTAG	2 cut(s)	387, 564
GluI	GCNGC	2 cut(s)	60, 524
GsaI	CCCAGC	1 cut(s)	81
GsuI	CTGGAG	1 cut(s)	316
HaeIII	GGCC	2 cut(s)	299, 447
HapII	CCGG	3 cut(s)	56, 111, 149
Hin1I	GRCGYC	1 cut(s)	321
Hin1II	CATG	1 cut(s)	298
HpaII	CCGG	3 cut(s)	56, 111, 149
HphI	GGTGA	3 cut(s)	31, 45, 166
Hpy166II	GTNNAC	4 cut(s)	40, 42, 97, 356
Hpy188I	TCNGA	4 cut(s)	172, 274, 312, 468
Hpy188III	TCNNGA	2 cut(s)	128, 455
Hpy8I	GTNNAC	4 cut(s)	40, 42, 97, 356
Hpy99I	CGWCG	3 cut(s)	95, 323, 461
HpyAV	CCTTC	2 cut(s)	299, 372
HpyCH4III	ACNGT	3 cut(s)	37, 360, 533
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	1 cut(s)	365
HpyF10VI	GCNNNNNNNGC	3 cut(s)	305, 371, 392
HpyF3I	CTNAG	2 cut(s)	254, 309
HpySE526I	ACGT	1 cut(s)	321
Hsp92I	GRCGYC	1 cut(s)	321
Hsp92II	CATG	1 cut(s)	298
Kzo9I	GATC	2 cut(s)	312, 535
LguI	GCTCTTC	1 cut(s)	408
LmnI	GCTCC	2 cut(s)	130, 244
Lsp1109I	GCAGC	1 cut(s)	510
LweI	GCATC	1 cut(s)	373
MaeI	CTAG	2 cut(s)	387, 564
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	2 cut(s)	314, 537
MboI	GATC	2 cut(s)	312, 535
MboII	GAAGA	3 cut(s)	143, 395, 497
MflI	RGATCY	1 cut(s)	312
MlsI	TGGCCA	1 cut(s)	299
MluCI	AATT	3 cut(s)	166, 173, 491
MluNI	TGGCCA	1 cut(s)	299
MmeI	TCCRAC	1 cut(s)	496
MnlI	CCTC	7 cut(s)	7, 19, 156, 251, 337, 340, 458
Mox20I	TGGCCA	1 cut(s)	299
MscI	TGGCCA	1 cut(s)	299
MseI	TTAA	1 cut(s)	528
Msp20I	TGGCCA	1 cut(s)	299
MspI	CCGG	3 cut(s)	56, 111, 149
MspR9I	CCNGG	2 cut(s)	334, 351
MvaI	CCWGG	2 cut(s)	334, 351
MwoI	GCNNNNNNNGC	3 cut(s)	305, 371, 392
NdeII	GATC	2 cut(s)	312, 535
NheI	GCTAGC	1 cut(s)	386
NlaIII	CATG	1 cut(s)	298
NlaIV	GGNNCC	2 cut(s)	126, 454
PciSI	GCTCTTC	1 cut(s)	408
PcsI	WCGNNNNNNNCGW	4 cut(s)	176, 206, 438, 456
PfoI	TCCNGGA	1 cut(s)	332
PkrI	GCNGC	2 cut(s)	61, 525
Psp6I	CCWGG	2 cut(s)	332, 349
PspFI	CCCAGC	1 cut(s)	77
PspGI	CCWGG	2 cut(s)	332, 349
PspN4I	GGNNCC	2 cut(s)	126, 454
PspPI	GGNCC	3 cut(s)	347, 356, 452
PsuI	RGATCY	1 cut(s)	312
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SapI	GCTCTTC	1 cut(s)	408
SaqAI	TTAA	1 cut(s)	528
SatI	GCNGC	2 cut(s)	60, 524
Sau3AI	GATC	2 cut(s)	312, 535
Sau96I	GGNCC	3 cut(s)	347, 356, 452
ScrFI	CCNGG	2 cut(s)	334, 351
SetI	ASST	7 cut(s)	18, 221, 255, 310, 324, 465, 516
SfaNI	GCATC	1 cut(s)	373
SgrAI	CRCCGGYG	1 cut(s)	55
SinI	GGWCC	3 cut(s)	347, 356, 452
SmlI	CTYRAG	1 cut(s)	509
SmoI	CTYRAG	1 cut(s)	509
Sse9I	AATT	3 cut(s)	166, 173, 491
SsiI	CCGC	2 cut(s)	59, 204
SspMI	CTAG	2 cut(s)	387, 564
StyD4I	CCNGG	2 cut(s)	332, 349
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	3 cut(s)	37, 360, 533
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	1 cut(s)	441
TaqII	GACCGA	1 cut(s)	440
TasI	AATT	3 cut(s)	166, 173, 491
TatI	WGTACW	1 cut(s)	39
TauI	GCSGC	1 cut(s)	62
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TseI	GCWGC	1 cut(s)	523
TspGWI	ACGGA	2 cut(s)	257, 447
VpaK11BI	GGWCC	3 cut(s)	347, 356, 452
XagI	CCTNNNNNAGG	1 cut(s)	331
XapI	RAATTY	1 cut(s)	491
XspI	CTAG	2 cut(s)	387, 564
ZraI	GACGTC	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.