Rmu_sc0004862.1_g000002

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004862.1
Physical Location & Seq
Reverse (-)
9882 .. 14005
4124 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004862.1_g000002.1.cds

Sequence Viewer

Length: 1362 bp
atgtcgttagtagtggaggctatggtcacgactctaacggagcatgtgttcacagctctaatcaaccaggctgaatttgcacttgacttcagcggccagtttgagcagttgaagacagggcttgatctcaccaaggccttacttgcagacacggagagtctcaaccacaagaacaacattgtcaaggcagcattatttgagctgagagaagtcatctacaaagccgacgatgtgctcactgattgcttggttagagatgaatacagaaaggatagatcttgttccggctccttgtttcacgatccattcttcctgcatcgtacaggaaagaaattgaaagacattaatttgcgtatgaaggagatagagcagaccttgggcaagtttttgagggctcctgataacatacatagagaagatgcttaccaagttagggtgatggtttcacaggactggaatccaactgagataattgggttggatagcgatgtggagaagattaagggttggcttttcgacactagcaaggtactttcccacgtaggcattgtgggaatgggaggcttggggaaaaccaccattgctcaaaagatatttcatgatctagaagtagtaggccactttcacaagctgatatgggtgtgtgtttcgcaatcattcagtgctgatcggattatgaggagcatcctagaaggtctaggagaaaatgcctctggagctggtgttactcagattttgagcagaattcagcaagtacttacagataagagctgtctgattgtcatggatgatgtgtggaatcaaacagatgttgattggtggaccaacctctgctctgtcatacccaaacaaagcagctgcatcatcgttacaactagaaatgaagaagctgtaattggtatgggagttgaaagctcacgaatccaccgtcccaagactcttaatgatgaggaaagctggcgcttgttctccaagtttgcatttcctacaagcaagggattgtgcccggaggacaggcttgagaaattaggaaaagaactcttgaagaagtgtggtggactcccactcgcaatcaagactataggatccttgttggcatcaaaggtcgactccccttctcagtggagacgagttcttgagagctttcatgctttgacaacagagggaaaaactagctcagttatggcctctttgcgattgagctatgatgaactcccgcctggtctgaagcaatgcctgctgtgtttctccatctatcctgaagactatgagatacgtgctgatcaatacaccaatcccgtagctattcccaagcaaatgttaaacctagcttcccaatcaagtttcaatttggacttttga

Protein Analysis

453

Amino Acids

50.95

Weight (kDa)

5.94

Isoelectric Point (pI)

38.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000540)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50950 AT3G50950
fragaria_vesca FvH4_1g12710 FvH4_1g12710 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820
malus_domestica MD02G1141100.v1.1 MD10G1333100.v1.1
prunus_persica Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.6G150700_v2.0.a1 Prupe.7G160100_v2.0.a1 Prupe.7G160100_v2.0.a1
pyrus_communis pycom02g11110 pycom10g28240 pycom10g28340 pycom10g28360 pycom10g28450
rosa_chinensis RchiOBHm_Chr2g0100711 RchiOBHm_Chr3g0485861 RchiOBHm_Chr4g0391451 RchiOBHm_Chr4g0391591 RchiOBHm_Chr4g0391601 RchiOBHm_Chr4g0391681 RchiOBHm_Chr5g0001141 RchiOBHm_Chr5g0001221
rosa_laevigata RLG00000017001
rosa_multiflora Rmu_co8260007.1_g000001 Rmu_co8260103.1_g000001 Rmu_co8519155.1_g000001 Rmu_sc0000060.1_g000050 Rmu_sc0000255.1_g000036 Rmu_sc0001174.1_g000023 Rmu_sc0001174.1_g000025 Rmu_sc0001659.1_g000009 Rmu_sc0001706.1_g000009 Rmu_sc0001706.1_g000024 Rmu_sc0001706.1_g000035 Rmu_sc0004189.1_g000018 Rmu_sc0004189.1_g000030 Rmu_sc0004862.1_g000002 Rmu_sc0004876.1_g000038 Rmu_sc0023741.1_g000004
rosa_roxburghii Rroxscaffold_1G00075100 Rroxscaffold_1G00075160 Rroxscaffold_1G00075210 Rroxscaffold_5G00337160 Rroxscaffold_5G00386590 Rroxscaffold_6G00396300
rosa_rugosa Rorug03G0336200 Rorug03G0336300 Rorug04G0389400
rosa_samantha Rh2AG140400 Rh2BG144100 Rh2CG145400 Rh2DG144900 Rh3AG271200 Rh4AG038000 Rh4AG038700 Rh4BG032000 Rh4BG032800 Rh4CG041100 Rh4CG041300 Rh4DG035500 Rh4DG035600 Rh5AG008800 Rh5AG009100 Rh5BG010900 Rh5BG011500 Rh5BG011600 Rh5BG012000 Rh5CG009400 Rh5CG010000 Rh5DG009800
rosa_wichuraiana Rw2G010940 Rw4G002950 Rw4G002990 Rw4G003000 Rw5G000880 Rw5G000950 Rw5G000960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1107
AciI CCGC 2 cut(s) 93, 1217
AclWI GGATC 3 cut(s) 296, 1080, 1093
AcoI YGGCCR 1 cut(s) 94
AcsI RAATTY 2 cut(s) 74, 744
AcuI CTGAAG 3 cut(s) 73, 1247, 1281
AfaI GTAC 3 cut(s) 322, 531, 756
AfiI CCNNNNNNNGG 1 cut(s) 433
AgsI TTSAA 5 cut(s) 112, 337, 911, 1045, 1348
AjnI CCWGG 2 cut(s) 66, 1219
AjuI GAANNNNNNNTTGG 2 cut(s) 879, 911
AloI GAACNNNNNNTCC 2 cut(s) 32, 64
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 2 cut(s) 164, 1120
AlwI GGATC 3 cut(s) 296, 1080, 1093
AoxI GGCC 4 cut(s) 94, 135, 616, 1185
ApeKI GCWGC 3 cut(s) 188, 855, 858
ApoI RAATTY 2 cut(s) 74, 744
ArsI GACNNNNNNTTYG 2 cut(s) 913, 945
AseI ATTAAT 1 cut(s) 345
AspLEI GCGC 1 cut(s) 963
AspS9I GGNCC 1 cut(s) 822
AsuC2I CCSGG 1 cut(s) 1007
AsuHPI GGTGA 2 cut(s) 121, 448
AvaII GGWCC 1 cut(s) 822
BaeGI GKGCMC 1 cut(s) 1007
BamHI GGATCC 1 cut(s) 1085
BanII GRGCYC 1 cut(s) 397
BbsI GAAGAC 2 cut(s) 119, 1269
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 3 cut(s) 200, 845, 867
BccI CCATC 2 cut(s) 433, 1259
BciT130I CCWGG 2 cut(s) 68, 1221
BclI TGATCA 1 cut(s) 1282
BcnI CCSGG 1 cut(s) 1007
BcoDI GTCTC 2 cut(s) 164, 1120
BfaI CTAG 7 cut(s) 522, 605, 689, 698, 876, 1173, 1328
BfmI CTRYAG 1 cut(s) 1080
BfoI RGCGCY 1 cut(s) 964
BglII AGATCT 1 cut(s) 275
BisI GCNGC 4 cut(s) 94, 189, 856, 859
BlsI GCNGC 4 cut(s) 95, 190, 857, 860
BmcAI AGTACT 1 cut(s) 756
Bme1390I CCNGG 3 cut(s) 68, 1007, 1221
Bme18I GGWCC 1 cut(s) 822
BmgT120I GGNCC 1 cut(s) 822
BmiI GGNNCC 3 cut(s) 289, 396, 1087
BmrFI CCNGG 3 cut(s) 68, 1007, 1221
BmsI GCATC 5 cut(s) 325, 409, 693, 870, 1106
BpiI GAAGAC 2 cut(s) 119, 1269
BpmI CTGGAG 1 cut(s) 735
BpuEI CTTGAG 2 cut(s) 1040, 1157
BpuMI CCSGG 1 cut(s) 1007
BsaAI YACGTR 2 cut(s) 541, 1277
BsaJI CCNNGG 2 cut(s) 132, 375
BsaXI ACNNNNNCTCC 4 cut(s) 32, 62, 708, 738
Bsc4I CCNNNNNNNGG 1 cut(s) 433
Bse1I ACTGG 2 cut(s) 97, 458
Bse3DI GCAATG 2 cut(s) 579, 1238
BseBI CCWGG 2 cut(s) 68, 1221
BseDI CCNNGG 2 cut(s) 132, 375
BseGI GGATG 2 cut(s) 684, 793
BseLI CCNNNNNNNGG 1 cut(s) 433
BseMI GCAATG 2 cut(s) 579, 1238
BseMII CTCAG 5 cut(s) 194, 456, 743, 1133, 1191
BseNI ACTGG 2 cut(s) 97, 458
BseRI GAGGAG 1 cut(s) 694
BseSI GKGCMC 1 cut(s) 1007
BseXI GCAGC 3 cut(s) 200, 845, 867
BshFI GGCC 4 cut(s) 96, 137, 618, 1187
BsiHKAI GWGCWC 1 cut(s) 237
BsiSI CCGG 2 cut(s) 285, 1007
BslFI GGGAC 1 cut(s) 915
BslI CCNNNNNNNGG 1 cut(s) 433
BsmAI GTCTC 2 cut(s) 164, 1120
BsmBI CGTCTC 1 cut(s) 1120
BsmFI GGGAC 1 cut(s) 915
BsnI GGCC 4 cut(s) 96, 137, 618, 1187
Bsp1286I GDGCHC 3 cut(s) 237, 397, 1007
Bsp143I GATC 7 cut(s) 124, 275, 301, 601, 667, 1085, 1282
BspACI CCGC 2 cut(s) 93, 1217
BspANI GGCC 4 cut(s) 96, 137, 618, 1187
BspCNI CTCAG 5 cut(s) 195, 457, 742, 1132, 1190
BspHI TCATGA 1 cut(s) 598
BspLI GGNNCC 3 cut(s) 289, 396, 1087
BspPI GGATC 3 cut(s) 296, 1080, 1093
BsrDI GCAATG 2 cut(s) 579, 1238
BsrI ACTGG 2 cut(s) 97, 458
BssECI CCNNGG 2 cut(s) 132, 375
BssMI GATC 7 cut(s) 124, 275, 301, 601, 667, 1085, 1282
BssT1I CCWWGG 2 cut(s) 132, 375
Bst2UI CCWGG 2 cut(s) 68, 1221
Bst4CI ACNGT 1 cut(s) 929
BstAPI GCANNNNNTGC 1 cut(s) 1237
BstBAI YACGTR 2 cut(s) 541, 1277
BstC8I GCNNGC 2 cut(s) 959, 1238
BstDEI CTNAG 5 cut(s) 203, 465, 729, 1119, 1177
BstF5I GGATG 2 cut(s) 684, 793
BstH2I RGCGCY 1 cut(s) 964
BstHHI GCGC 1 cut(s) 963
BstKTI GATC 7 cut(s) 127, 278, 304, 604, 670, 1088, 1285
BstMAI GTCTC 2 cut(s) 164, 1120
BstMBI GATC 7 cut(s) 124, 275, 301, 601, 667, 1085, 1282
BstMWI GCNNNNNNNGC 4 cut(s) 77, 143, 716, 1237
BstNI CCWGG 2 cut(s) 68, 1221
BstNSI RCATGY 1 cut(s) 47
BstSCI CCNGG 3 cut(s) 66, 1005, 1219
BstSFI CTRYAG 1 cut(s) 1080
BstSLI GKGCMC 1 cut(s) 1007
BstV1I GCAGC 3 cut(s) 200, 845, 867
BstV2I GAAGAC 2 cut(s) 119, 1269
BstX2I RGATCY 2 cut(s) 275, 1085
BstYI RGATCY 2 cut(s) 275, 1085
BsuRI GGCC 4 cut(s) 96, 137, 618, 1187
BtgZI GCGATG 1 cut(s) 501
BtsCI GGATG 2 cut(s) 684, 793
BtsIMutI CAGTG 3 cut(s) 237, 667, 1127
Cac8I GCNNGC 2 cut(s) 959, 1238
CciI TCATGA 1 cut(s) 598
CfoI GCGC 1 cut(s) 963
Cfr13I GGNCC 1 cut(s) 822
Csp6I GTAC 3 cut(s) 321, 530, 755
CviAII CATG 4 cut(s) 44, 599, 784, 1148
CviQI GTAC 3 cut(s) 321, 530, 755
DdeI CTNAG 5 cut(s) 203, 465, 729, 1119, 1177
DpnI GATC 7 cut(s) 126, 277, 303, 603, 669, 1087, 1284
DpnII GATC 7 cut(s) 124, 275, 301, 601, 667, 1085, 1282
EaeI YGGCCR 1 cut(s) 94
Eco130I CCWWGG 2 cut(s) 132, 375
Eco147I AGGCCT 1 cut(s) 137
Eco24I GRGCYC 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 822
Eco57I CTGAAG 3 cut(s) 73, 1247, 1281
EcoRI GAATTC 1 cut(s) 744
EcoRII CCWGG 2 cut(s) 66, 1219
EcoT14I CCWWGG 2 cut(s) 132, 375
EcoT38I GRGCYC 1 cut(s) 397
ErhI CCWWGG 2 cut(s) 132, 375
Esp3I CGTCTC 1 cut(s) 1120
FaeI CATG 4 cut(s) 47, 602, 787, 1151
FaqI GGGAC 1 cut(s) 915
FatI CATG 4 cut(s) 43, 598, 783, 1147
FauI CCCGC 1 cut(s) 1224
FbaI TGATCA 1 cut(s) 1282
FblI GTMKAC 1 cut(s) 1107
Fnu4HI GCNGC 4 cut(s) 94, 189, 856, 859
FokI GGATG 2 cut(s) 671, 800
FriOI GRGCYC 1 cut(s) 397
Fsp4HI GCNGC 4 cut(s) 94, 189, 856, 859
FspBI CTAG 7 cut(s) 522, 605, 689, 698, 876, 1173, 1328
GlaI GCGC 1 cut(s) 962
GluI GCNGC 4 cut(s) 94, 189, 856, 859
GsuI CTGGAG 1 cut(s) 735
HaeII RGCGCY 1 cut(s) 964
HaeIII GGCC 4 cut(s) 96, 137, 618, 1187
HapII CCGG 2 cut(s) 285, 1007
HhaI GCGC 1 cut(s) 963
Hin1II CATG 4 cut(s) 47, 602, 787, 1151
Hin6I GCGC 1 cut(s) 961
HinP1I GCGC 1 cut(s) 961
HincII GTYRAC 1 cut(s) 1108
HindII GTYRAC 1 cut(s) 1108
HinfI GANTC 8 cut(s) 31, 157, 457, 799, 921, 937, 1059, 1109
HpaII CCGG 2 cut(s) 285, 1007
HphI GGTGA 2 cut(s) 121, 448
Hpy166II GTNNAC 4 cut(s) 51, 822, 1058, 1108
Hpy188I TCNGA 4 cut(s) 672, 732, 777, 1227
Hpy8I GTNNAC 4 cut(s) 51, 822, 1058, 1108
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 3 cut(s) 352, 686, 1125
HpyCH4III ACNGT 1 cut(s) 929
HpyCH4IV ACGT 2 cut(s) 540, 1276
HpyCH4V TGCA 5 cut(s) 80, 146, 316, 861, 980
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 143, 716, 1237
HpyF3I CTNAG 5 cut(s) 203, 465, 729, 1119, 1177
HpySE526I ACGT 2 cut(s) 540, 1276
Hsp92II CATG 4 cut(s) 47, 602, 787, 1151
HspAI GCGC 1 cut(s) 961
Ksp22I TGATCA 1 cut(s) 1282
Kzo9I GATC 7 cut(s) 124, 275, 301, 601, 667, 1085, 1282
LmnI GCTCC 5 cut(s) 40, 293, 400, 681, 716
Lsp1109I GCAGC 3 cut(s) 200, 845, 867
LweI GCATC 5 cut(s) 325, 409, 693, 870, 1106
MaeI CTAG 7 cut(s) 522, 605, 689, 698, 876, 1173, 1328
MaeII ACGT 2 cut(s) 540, 1276
MaeIII GTNAC 3 cut(s) 25, 724, 868
MalI GATC 7 cut(s) 126, 277, 303, 603, 669, 1087, 1284
MboI GATC 7 cut(s) 124, 275, 301, 601, 667, 1085, 1282
MboII GAAGA 7 cut(s) 124, 301, 428, 508, 896, 1057, 1274
MflI RGATCY 2 cut(s) 275, 1085
MhlI GDGCHC 3 cut(s) 237, 397, 1007
MluCI AATT 8 cut(s) 74, 332, 346, 471, 744, 894, 1025, 1348
MlyI GAGTC 5 cut(s) 25, 166, 931, 1053, 1103
MmeI TCCRAC 2 cut(s) 459, 485
MseI TTAA 4 cut(s) 345, 501, 942, 1322
MspA1I CMGCKG 2 cut(s) 93, 858
MspI CCGG 2 cut(s) 285, 1007
MspR9I CCNGG 3 cut(s) 68, 1007, 1221
MvaI CCWGG 2 cut(s) 68, 1221
MwoI GCNNNNNNNGC 4 cut(s) 77, 143, 716, 1237
NciI CCSGG 1 cut(s) 1007
NdeII GATC 7 cut(s) 124, 275, 301, 601, 667, 1085, 1282
NlaIII CATG 4 cut(s) 47, 602, 787, 1151
NlaIV GGNNCC 3 cut(s) 289, 396, 1087
NmuCI GTSAC 1 cut(s) 25
NspI RCATGY 1 cut(s) 47
PagI TCATGA 1 cut(s) 598
PceI AGGCCT 1 cut(s) 137
PcsI WCGNNNNNNNCGW 1 cut(s) 925
PfeI GAWTC 3 cut(s) 457, 799, 921
PkrI GCNGC 4 cut(s) 95, 190, 857, 860
PleI GAGTC 5 cut(s) 25, 165, 931, 1053, 1103
PpsI GAGTC 5 cut(s) 25, 165, 931, 1053, 1103
Ppu21I YACGTR 2 cut(s) 541, 1277
PshBI ATTAAT 1 cut(s) 345
Psp6I CCWGG 2 cut(s) 66, 1219
PspGI CCWGG 2 cut(s) 66, 1219
PspN4I GGNNCC 3 cut(s) 289, 396, 1087
PspPI GGNCC 1 cut(s) 822
PsuI RGATCY 2 cut(s) 275, 1085
PvuII CAGCTG 1 cut(s) 858
RsaI GTAC 3 cut(s) 322, 531, 756
RsaNI GTAC 3 cut(s) 321, 530, 755
SalI GTCGAC 1 cut(s) 1106
SaqAI TTAA 4 cut(s) 345, 501, 942, 1322
SatI GCNGC 4 cut(s) 94, 189, 856, 859
Sau3AI GATC 7 cut(s) 124, 275, 301, 601, 667, 1085, 1282
Sau96I GGNCC 1 cut(s) 822
ScaI AGTACT 1 cut(s) 756
SchI GAGTC 5 cut(s) 25, 166, 931, 1053, 1103
ScrFI CCNGG 3 cut(s) 68, 1007, 1221
SduI GDGCHC 3 cut(s) 237, 397, 1007
SfaNI GCATC 5 cut(s) 325, 409, 693, 870, 1106
SfcI CTRYAG 1 cut(s) 1080
SinI GGWCC 1 cut(s) 822
SmlI CTYRAG 2 cut(s) 1019, 1136
SmoI CTYRAG 2 cut(s) 1019, 1136
Sse9I AATT 8 cut(s) 74, 332, 346, 471, 744, 894, 1025, 1348
SseBI AGGCCT 1 cut(s) 137
SsiI CCGC 2 cut(s) 93, 1217
SspMI CTAG 7 cut(s) 522, 605, 689, 698, 876, 1173, 1328
StuI AGGCCT 1 cut(s) 137
StyD4I CCNGG 3 cut(s) 66, 1005, 1219
StyI CCWWGG 2 cut(s) 132, 375
TaaI ACNGT 1 cut(s) 929
TaiI ACGT 2 cut(s) 543, 1279
TaqI TCGA 2 cut(s) 516, 1107
TasI AATT 8 cut(s) 74, 332, 346, 471, 744, 894, 1025, 1348
TatI WGTACW 1 cut(s) 754
TauI GCSGC 1 cut(s) 96
TfiI GAWTC 3 cut(s) 457, 799, 921
Tru1I TTAA 4 cut(s) 345, 501, 942, 1322
Tru9I TTAA 4 cut(s) 345, 501, 942, 1322
TscAI CASTG 3 cut(s) 244, 667, 1127
TseFI GTSAC 1 cut(s) 25
TseI GCWGC 3 cut(s) 188, 855, 858
Tsp45I GTSAC 1 cut(s) 25
TspDTI ATGAA 6 cut(s) 273, 371, 587, 897, 1136, 1224
TspGWI ACGGA 2 cut(s) 53, 167
TspRI CASTG 3 cut(s) 244, 667, 1127
VpaK11BI GGWCC 1 cut(s) 822
VspI ATTAAT 1 cut(s) 345
XapI RAATTY 2 cut(s) 74, 744
XbaI TCTAGA 1 cut(s) 604
XceI RCATGY 1 cut(s) 47
XmiI GTMKAC 1 cut(s) 1107
XspI CTAG 7 cut(s) 522, 605, 689, 698, 876, 1173, 1328
ZrmI AGTACT 1 cut(s) 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.