Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001174.1

Orthogroup ID

OG0000540

Physical Location & Seq

Genomic Coordinates Reverse (-)

66506 .. 67543

Gene Structure 1038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001174.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

atgattgcagaggaggaggaattatgctgctttgatgaacaaggcagacagaaattgacaggaaatactaggtggttatgctttattgatgaaatggcggagaagtccatgaaaagtagttcaaagctcagggcattgttgatgatgtcaagccgcagatttgactttgaaaggaattctttgcgatccctcagaatgttggatttatcaaactgcactgtggatgagcattgtgtgaaggatctcttcagctggatcagctcccttaagcgcttagcatctttgaacttaagtggtattcaggctctgaaagaactgccatcttcaattcataaactcctcaacctccaacttttacttctaacaggttgcagcaatctagaaaaaatacacccttccatcactaatttgaagaagctgattattttggacctaggcgggtgtccaatccaacacttacctcagggattgggaaggctttcttatcttcaagagttctccggattgaagattgtgagtcagcctagaatgccatgtttccggcttcttgagattagggaactgatcaacctgagagtactgcgaatacatgtaagcagtaccacagttattgcagacaatgaacttgatgtcctctctcagcttcgaaggctcaatgttctggctatcgacgcagaagattgtaaaaataacaatgttttggaaatgctagaaaggctgacccctcctccaatcctccaagagctgtatcttaggaattacaagaaggaaactctgcctagctgggttaatcccggacagctttcaagattgcagtatctttgcatcgagaatggagaccttgtcaagctaagtagtggtcaaaccacctggaaccttgaaggcctgtgtctcaagtacttgatgaggctagaggtagactggaaggacttggagaaggatatgcctgtactccactacatggagatcagtcattgttacaacttgaaggatttcccatgttcagttatggaaccaggggtctggagaaagaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0023052 GO:0042742 GO:0043207 GO:0043621 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

345

Amino Acids

39.82

Weight (kDa)

7.49

Isoelectric Point (pI)

50.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50950 AT3G50950
fragaria_vesca	FvH4_1g12710 FvH4_1g12710 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820
malus_domestica	MD02G1141100.v1.1 MD10G1333100.v1.1
prunus_persica	Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.6G150700_v2.0.a1 Prupe.7G160100_v2.0.a1 Prupe.7G160100_v2.0.a1
pyrus_communis	pycom02g11110 pycom10g28240 pycom10g28340 pycom10g28360 pycom10g28450
rosa_chinensis	RchiOBHm_Chr2g0100711 RchiOBHm_Chr3g0485861 RchiOBHm_Chr4g0391451 RchiOBHm_Chr4g0391591 RchiOBHm_Chr4g0391601 RchiOBHm_Chr4g0391681 RchiOBHm_Chr5g0001141 RchiOBHm_Chr5g0001221
rosa_laevigata	RLG00000017001
rosa_multiflora	Rmu_co8260007.1_g000001 Rmu_co8260103.1_g000001 Rmu_co8519155.1_g000001 Rmu_sc0000060.1_g000050 Rmu_sc0000255.1_g000036 Rmu_sc0001174.1_g000023 Rmu_sc0001174.1_g000025 Rmu_sc0001659.1_g000009 Rmu_sc0001706.1_g000009 Rmu_sc0001706.1_g000024 Rmu_sc0001706.1_g000035 Rmu_sc0004189.1_g000018 Rmu_sc0004189.1_g000030 Rmu_sc0004862.1_g000002 Rmu_sc0004876.1_g000038 Rmu_sc0023741.1_g000004
rosa_roxburghii	Rroxscaffold_1G00075100 Rroxscaffold_1G00075160 Rroxscaffold_1G00075210 Rroxscaffold_5G00337160 Rroxscaffold_5G00386590 Rroxscaffold_6G00396300
rosa_rugosa	Rorug03G0336200 Rorug03G0336300 Rorug04G0389400
rosa_samantha	Rh2AG140400 Rh2BG144100 Rh2CG145400 Rh2DG144900 Rh3AG271200 Rh4AG038000 Rh4AG038700 Rh4BG032000 Rh4BG032800 Rh4CG041100 Rh4CG041300 Rh4DG035500 Rh4DG035600 Rh5AG008800 Rh5AG009100 Rh5BG010900 Rh5BG011500 Rh5BG011600 Rh5BG012000 Rh5CG009400 Rh5CG010000 Rh5DG009800
rosa_wichuraiana	Rw2G010940 Rw4G002950 Rw4G002990 Rw4G003000 Rw5G000880 Rw5G000950 Rw5G000960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	961
AccI	GTMKAC	1 cut(s)	918
AccIII	TCCGGA	1 cut(s)	500
AciI	CCGC	3 cut(s)	98, 154, 438
AclWI	GGATC	3 cut(s)	180, 249, 263
AcsI	RAATTY	1 cut(s)	175
AcuI	CTGAAG	1 cut(s)	232
AfaI	GTAC	4 cut(s)	579, 601, 899, 951
AfeI	AGCGCT	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	961
AflII	CTTAAG	2 cut(s)	266, 289
AflIII	ACRYGT	1 cut(s)	589
AjnI	CCWGG	2 cut(s)	869, 1015
AjuI	GAANNNNNNNTTGG	2 cut(s)	342, 374
AloI	GAACNNNNNNTCC	2 cut(s)	615, 647
AluBI	AGCT	9 cut(s)	127, 252, 261, 418, 643, 745, 783, 802, 850
AluI	AGCT	9 cut(s)	127, 252, 261, 418, 643, 745, 783, 802, 850
Alw26I	GTCTC	2 cut(s)	831, 896
AlwI	GGATC	3 cut(s)	180, 249, 263
AlwNI	CAGNNNCTG	1 cut(s)	307
Aor13HI	TCCGGA	1 cut(s)	500
Aor51HI	AGCGCT	1 cut(s)	272
AoxI	GGCC	1 cut(s)	883
ApeKI	GCWGC	2 cut(s)	27, 372
ApoI	RAATTY	1 cut(s)	175
Asp700I	GAANNNNTTC	2 cut(s)	478, 992
AspA2I	CCTAGG	1 cut(s)	433
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	1 cut(s)	430
AsuC2I	CCSGG	1 cut(s)	795
AsuII	TTCGAA	1 cut(s)	646
AvaII	GGWCC	1 cut(s)	430
AvrII	CCTAGG	1 cut(s)	433
AxyI	CCTNAGG	1 cut(s)	462
BbvI	GCAGC	2 cut(s)	14, 384
BccI	CCATC	2 cut(s)	328, 407
BciT130I	CCWGG	2 cut(s)	871, 1017
BclI	TGATCA	1 cut(s)	564
BcnI	CCSGG	1 cut(s)	795
BcoDI	GTCTC	2 cut(s)	831, 896
BfaI	CTAG	7 cut(s)	69, 380, 434, 525, 710, 780, 911
BfoI	RGCGCY	1 cut(s)	274
BfrI	CTTAAG	2 cut(s)	266, 289
BisI	GCNGC	3 cut(s)	28, 154, 373
BlnI	CCTAGG	1 cut(s)	433
BlpI	GCTNAGC	1 cut(s)	274
BlsI	GCNGC	3 cut(s)	29, 155, 374
BmcAI	AGTACT	2 cut(s)	579, 899
Bme1390I	CCNGG	3 cut(s)	795, 871, 1017
Bme18I	GGWCC	1 cut(s)	430
BmgT120I	GGNCC	1 cut(s)	430
BmiI	GGNNCC	2 cut(s)	875, 1014
BmrFI	CCNGG	3 cut(s)	795, 871, 1017
BmsI	GCATC	2 cut(s)	287, 834
Bpu10I	CCTNAGC	1 cut(s)	128
Bpu1102I	GCTNAGC	1 cut(s)	274
Bpu14I	TTCGAA	1 cut(s)	646
BpuEI	CTTGAG	2 cut(s)	569, 878
BpuMI	CCSGG	1 cut(s)	795
BsaI	GGTCTC	1 cut(s)	831
BsaJI	CCNNGG	2 cut(s)	433, 1016
BsaWI	WCCGGW	1 cut(s)	500
BsaXI	ACNNNNNCTCC	4 cut(s)	712, 742, 828, 858
Bsc4I	CCNNNNNNNGG	1 cut(s)	961
Bse1I	ACTGG	1 cut(s)	926
Bse21I	CCTNAGG	1 cut(s)	462
BseAI	TCCGGA	1 cut(s)	500
BseBI	CCWGG	2 cut(s)	871, 1017
BseDI	CCNNGG	2 cut(s)	433, 1016
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	961
BseMII	CTCAG	5 cut(s)	142, 205, 476, 563, 653
BseNI	ACTGG	1 cut(s)	926
BseRI	GAGGAG	4 cut(s)	26, 29, 329, 717
BseXI	GCAGC	2 cut(s)	14, 384
BseYI	CCCAGC	1 cut(s)	783
BsgI	GTGCAG	1 cut(s)	199
BshFI	GGCC	1 cut(s)	885
BsiSI	CCGG	3 cut(s)	501, 541, 795
BslI	CCNNNNNNNGG	1 cut(s)	961
BsmAI	GTCTC	2 cut(s)	831, 896
BsmI	GAATGC	1 cut(s)	534
BsnI	GGCC	1 cut(s)	885
Bso31I	GGTCTC	1 cut(s)	831
Bsp119I	TTCGAA	1 cut(s)	646
Bsp13I	TCCGGA	1 cut(s)	500
Bsp143I	GATC	5 cut(s)	185, 241, 255, 564, 966
Bsp1720I	GCTNAGC	1 cut(s)	274
BspACI	CCGC	3 cut(s)	98, 154, 438
BspANI	GGCC	1 cut(s)	885
BspCNI	CTCAG	5 cut(s)	141, 204, 475, 564, 652
BspEI	TCCGGA	1 cut(s)	500
BspLI	GGNNCC	2 cut(s)	875, 1014
BspPI	GGATC	3 cut(s)	180, 249, 263
BspT104I	TTCGAA	1 cut(s)	646
BspTI	CTTAAG	2 cut(s)	266, 289
BspTNI	GGTCTC	1 cut(s)	831
BsrI	ACTGG	1 cut(s)	926
BssECI	CCNNGG	2 cut(s)	433, 1016
BssMI	GATC	5 cut(s)	185, 241, 255, 564, 966
BssT1I	CCWWGG	1 cut(s)	433
Bst2UI	CCWGG	2 cut(s)	871, 1017
Bst4CI	ACNGT	2 cut(s)	220, 607
Bst6I	CTCTTC	1 cut(s)	251
BstAFI	CTTAAG	2 cut(s)	266, 289
BstBI	TTCGAA	1 cut(s)	646
BstDEI	CTNAG	8 cut(s)	128, 191, 274, 462, 572, 639, 752, 851
BstF5I	GGATG	1 cut(s)	229
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	5 cut(s)	188, 244, 258, 567, 969
BstMAI	GTCTC	2 cut(s)	831, 896
BstMBI	GATC	5 cut(s)	185, 241, 255, 564, 966
BstMWI	GCNNNNNNNGC	5 cut(s)	258, 529, 649, 671, 715
BstNI	CCWGG	2 cut(s)	871, 1017
BstNSI	RCATGY	1 cut(s)	593
BstSCI	CCNGG	3 cut(s)	793, 869, 1015
BstV1I	GCAGC	2 cut(s)	14, 384
BstX2I	RGATCY	1 cut(s)	241
BstXI	CCANNNNNNTGG	1 cut(s)	1023
BstYI	RGATCY	1 cut(s)	241
Bsu36I	CCTNAGG	1 cut(s)	462
BsuRI	GGCC	1 cut(s)	885
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	216
CaiI	CAGNNNCTG	1 cut(s)	307
CfoI	GCGC	1 cut(s)	273
Cfr13I	GGNCC	1 cut(s)	430
CseI	GACGC	1 cut(s)	680
Csp6I	GTAC	4 cut(s)	578, 600, 898, 950
CspCI	CAANNNNNGTGG	2 cut(s)	592, 627
CviAII	CATG	5 cut(s)	109, 534, 590, 961, 999
CviQI	GTAC	4 cut(s)	578, 600, 898, 950
DdeI	CTNAG	8 cut(s)	128, 191, 274, 462, 572, 639, 752, 851
DpnI	GATC	5 cut(s)	187, 243, 257, 566, 968
DpnII	GATC	5 cut(s)	185, 241, 255, 564, 966
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
EciI	GGCGGA	1 cut(s)	113
Eco130I	CCWWGG	1 cut(s)	433
Eco147I	AGGCCT	1 cut(s)	885
Eco31I	GGTCTC	1 cut(s)	831
Eco47I	GGWCC	1 cut(s)	430
Eco47III	AGCGCT	1 cut(s)	272
Eco57I	CTGAAG	1 cut(s)	232
Eco81I	CCTNAGG	1 cut(s)	462
EcoRI	GAATTC	1 cut(s)	175
EcoRII	CCWGG	2 cut(s)	869, 1015
EcoT14I	CCWWGG	1 cut(s)	433
ErhI	CCWWGG	1 cut(s)	433
FaeI	CATG	5 cut(s)	112, 537, 593, 964, 1002
FalI	AAGNNNNNCTT	6 cut(s)	163, 195, 230, 262, 466, 498
FatI	CATG	5 cut(s)	108, 533, 589, 960, 998
FauI	CCCGC	1 cut(s)	431
FbaI	TGATCA	1 cut(s)	564
FblI	GTMKAC	1 cut(s)	918
Fnu4HI	GCNGC	3 cut(s)	28, 154, 373
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	3 cut(s)	28, 154, 373
FspBI	CTAG	7 cut(s)	69, 380, 434, 525, 710, 780, 911
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	3 cut(s)	28, 154, 373
GsaI	CCCAGC	1 cut(s)	787
HaeII	RGCGCY	1 cut(s)	274
HaeIII	GGCC	1 cut(s)	885
HapII	CCGG	3 cut(s)	501, 541, 795
HgaI	GACGC	1 cut(s)	680
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	5 cut(s)	112, 537, 593, 964, 1002
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HinfI	GANTC	1 cut(s)	517
HpaII	CCGG	3 cut(s)	501, 541, 795
Hpy166II	GTNNAC	1 cut(s)	919
Hpy188I	TCNGA	2 cut(s)	194, 309
Hpy188III	TCNNGA	7 cut(s)	380, 491, 501, 548, 807, 829, 1024
Hpy8I	GTNNAC	1 cut(s)	919
Hpy99I	CGWCG	1 cut(s)	674
HpyAV	CCTTC	9 cut(s)	232, 405, 468, 642, 760, 875, 919, 931, 982
HpyCH4III	ACNGT	2 cut(s)	220, 607
HpyCH4V	TGCA	6 cut(s)	8, 216, 372, 614, 814, 825
HpyF10VI	GCNNNNNNNGC	5 cut(s)	258, 529, 649, 671, 715
HpyF3I	CTNAG	8 cut(s)	128, 191, 274, 462, 572, 639, 752, 851
Hsp92II	CATG	5 cut(s)	112, 537, 593, 964, 1002
HspAI	GCGC	1 cut(s)	271
Kpn2I	TCCGGA	1 cut(s)	500
Ksp22I	TGATCA	1 cut(s)	564
Kzo9I	GATC	5 cut(s)	185, 241, 255, 564, 966
LmnI	GCTCC	1 cut(s)	266
Lsp1109I	GCAGC	2 cut(s)	14, 384
LweI	GCATC	2 cut(s)	287, 834
MaeI	CTAG	7 cut(s)	69, 380, 434, 525, 710, 780, 911
MaeIII	GTNAC	1 cut(s)	977
MalI	GATC	5 cut(s)	187, 243, 257, 566, 968
MboI	GATC	5 cut(s)	185, 241, 255, 564, 966
MboII	GAAGA	6 cut(s)	238, 315, 424, 479, 520, 689
MflI	RGATCY	1 cut(s)	241
MluCI	AATT	7 cut(s)	20, 53, 175, 327, 406, 757, 1033
MlyI	GAGTC	1 cut(s)	526
MmeI	TCCRAC	3 cut(s)	180, 373, 475
MroI	TCCGGA	1 cut(s)	500
MroXI	GAANNNNTTC	2 cut(s)	478, 992
MseI	TTAA	4 cut(s)	267, 290, 789, 1036
MspA1I	CMGCKG	1 cut(s)	252
MspCI	CTTAAG	2 cut(s)	266, 289
MspI	CCGG	3 cut(s)	501, 541, 795
MspR9I	CCNGG	3 cut(s)	795, 871, 1017
Mva1269I	GAATGC	1 cut(s)	534
MvaI	CCWGG	2 cut(s)	871, 1017
MwoI	GCNNNNNNNGC	5 cut(s)	258, 529, 649, 671, 715
NciI	CCSGG	1 cut(s)	795
NdeII	GATC	5 cut(s)	185, 241, 255, 564, 966
NlaIII	CATG	5 cut(s)	112, 537, 593, 964, 1002
NlaIV	GGNNCC	2 cut(s)	875, 1014
NspI	RCATGY	1 cut(s)	593
NspV	TTCGAA	1 cut(s)	646
PceI	AGGCCT	1 cut(s)	885
PciI	ACATGT	1 cut(s)	589
PctI	GAATGC	1 cut(s)	534
PdmI	GAANNNNTTC	2 cut(s)	478, 992
PflFI	GACNNNGTC	1 cut(s)	842
PflMI	CCANNNNNTGG	1 cut(s)	961
PfoI	TCCNGGA	1 cut(s)	793
PkrI	GCNGC	3 cut(s)	29, 155, 374
PleI	GAGTC	1 cut(s)	525
PpsI	GAGTC	1 cut(s)	525
PscI	ACATGT	1 cut(s)	589
Psp6I	CCWGG	2 cut(s)	869, 1015
PspFI	CCCAGC	1 cut(s)	783
PspGI	CCWGG	2 cut(s)	869, 1015
PspN4I	GGNNCC	2 cut(s)	875, 1014
PspPI	GGNCC	1 cut(s)	430
PstNI	CAGNNNCTG	1 cut(s)	307
PsuI	RGATCY	1 cut(s)	241
PsyI	GACNNNGTC	1 cut(s)	842
PvuII	CAGCTG	1 cut(s)	252
RsaI	GTAC	4 cut(s)	579, 601, 899, 951
RsaNI	GTAC	4 cut(s)	578, 600, 898, 950
SaqAI	TTAA	4 cut(s)	267, 290, 789, 1036
SatI	GCNGC	3 cut(s)	28, 154, 373
Sau3AI	GATC	5 cut(s)	185, 241, 255, 564, 966
Sau96I	GGNCC	1 cut(s)	430
ScaI	AGTACT	2 cut(s)	579, 899
SchI	GAGTC	1 cut(s)	526
ScrFI	CCNGG	3 cut(s)	795, 871, 1017
SfaNI	GCATC	2 cut(s)	287, 834
SfuI	TTCGAA	1 cut(s)	646
SinI	GGWCC	1 cut(s)	430
SmlI	CTYRAG	4 cut(s)	266, 289, 548, 893
SmoI	CTYRAG	4 cut(s)	266, 289, 548, 893
Sse9I	AATT	7 cut(s)	20, 53, 175, 327, 406, 757, 1033
SseBI	AGGCCT	1 cut(s)	885
SsiI	CCGC	3 cut(s)	98, 154, 438
SspMI	CTAG	7 cut(s)	69, 380, 434, 525, 710, 780, 911
StuI	AGGCCT	1 cut(s)	885
StyD4I	CCNGG	3 cut(s)	793, 869, 1015
StyI	CCWWGG	1 cut(s)	433
TaaI	ACNGT	2 cut(s)	220, 607
TaqI	TCGA	3 cut(s)	646, 669, 828
TasI	AATT	7 cut(s)	20, 53, 175, 327, 406, 757, 1033
TatI	WGTACW	3 cut(s)	577, 897, 949
TauI	GCSGC	1 cut(s)	156
Tru1I	TTAA	4 cut(s)	267, 290, 789, 1036
Tru9I	TTAA	4 cut(s)	267, 290, 789, 1036
TscAI	CASTG	1 cut(s)	223
TseI	GCWGC	2 cut(s)	27, 372
TspDTI	ATGAA	5 cut(s)	51, 105, 125, 320, 636
TspRI	CASTG	1 cut(s)	223
Tth111I	GACNNNGTC	1 cut(s)	842
Van91I	CCANNNNNTGG	1 cut(s)	961
Vha464I	CTTAAG	2 cut(s)	266, 289
VpaK11BI	GGWCC	1 cut(s)	430
XapI	RAATTY	1 cut(s)	175
XbaI	TCTAGA	1 cut(s)	379
XceI	RCATGY	1 cut(s)	593
XmaJI	CCTAGG	1 cut(s)	433
XmiI	GTMKAC	1 cut(s)	918
XmnI	GAANNNNTTC	2 cut(s)	478, 992
XspI	CTAG	7 cut(s)	69, 380, 434, 525, 710, 780, 911
ZrmI	AGTACT	2 cut(s)	579, 899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.