RchiOBHm_Chr4g0391601

NB-ARC domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
6971716 .. 6972225
510 bp
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UTR
Exon/CDS
Intron
PRQ36442

Sequence Viewer

Length: 510 bp
ATGCCATGTTTCCGGCTTCTTGAGATTAGGGAACTGATCAACCTGAGAGTACTGCGAATACATGTAAGCAGTACCACAGTTATTGCAGACAATGAACTTGATGTCCTCTCTCAGCTTAGAAGGCTCAATGTTCTGGGCATCGATGCAGAAGATTGTAGAAATAACAATGTTTTGGAAATGATAGAAAGGGTGACCCCTCCTCCAAGCCACCAAGAGTTGTATCTTAGGAATTACAAGAAGGAAACTCTGCCTAGCTGGGTTAATCCCGGACAGATTTCAAGATTGCAATATCTTTGCATCGAGAATGGAGACCTAGTCAAGCTAAGCAGTGGTCAAACCACCTGGAACCTTGAAGGCCTGTGTCTCAAGTACTTGATGAGGCTAGAGGTAGACTGGAAGGACTTGGAGAAGGATATGCCTGTACTCCACTACATGGAGGTCAGTCATTGTTACAAGCTGAAGGATTTCCCATGTTCAGTTATGGAACCTGGGGTCTGGAGAAAGAATTAA

Protein Analysis

169

Amino Acids

19.83

Weight (kDa)

6.1

Isoelectric Point (pI)

47.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 8 - 101 6.5e-11 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 21 - 117 1.1e-06 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000540)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50950 AT3G50950
fragaria_vesca FvH4_1g12710 FvH4_1g12710 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820
malus_domestica MD02G1141100.v1.1 MD10G1333100.v1.1
prunus_persica Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.6G150700_v2.0.a1 Prupe.7G160100_v2.0.a1 Prupe.7G160100_v2.0.a1
pyrus_communis pycom02g11110 pycom10g28240 pycom10g28340 pycom10g28360 pycom10g28450
rosa_chinensis RchiOBHm_Chr2g0100711 RchiOBHm_Chr3g0485861 RchiOBHm_Chr4g0391451 RchiOBHm_Chr4g0391591 RchiOBHm_Chr4g0391601 RchiOBHm_Chr4g0391681 RchiOBHm_Chr5g0001141 RchiOBHm_Chr5g0001221
rosa_laevigata RLG00000017001
rosa_multiflora Rmu_co8260007.1_g000001 Rmu_co8260103.1_g000001 Rmu_co8519155.1_g000001 Rmu_sc0000060.1_g000050 Rmu_sc0000255.1_g000036 Rmu_sc0001174.1_g000023 Rmu_sc0001174.1_g000025 Rmu_sc0001659.1_g000009 Rmu_sc0001706.1_g000009 Rmu_sc0001706.1_g000024 Rmu_sc0001706.1_g000035 Rmu_sc0004189.1_g000018 Rmu_sc0004189.1_g000030 Rmu_sc0004862.1_g000002 Rmu_sc0004876.1_g000038 Rmu_sc0023741.1_g000004
rosa_roxburghii Rroxscaffold_1G00075100 Rroxscaffold_1G00075160 Rroxscaffold_1G00075210 Rroxscaffold_5G00337160 Rroxscaffold_5G00386590 Rroxscaffold_6G00396300
rosa_rugosa Rorug03G0336200 Rorug03G0336300 Rorug04G0389400
rosa_samantha Rh2AG140400 Rh2BG144100 Rh2CG145400 Rh2DG144900 Rh3AG271200 Rh4AG038000 Rh4AG038700 Rh4BG032000 Rh4BG032800 Rh4CG041100 Rh4CG041300 Rh4DG035500 Rh4DG035600 Rh5AG008800 Rh5AG009100 Rh5BG010900 Rh5BG011500 Rh5BG011600 Rh5BG012000 Rh5CG009400 Rh5CG010000 Rh5DG009800
rosa_wichuraiana Rw2G010940 Rw4G002950 Rw4G002990 Rw4G003000 Rw5G000880 Rw5G000950 Rw5G000960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 433
AccI GTMKAC 1 cut(s) 390
AcuI CTGAAG 1 cut(s) 479
AfaI GTAC 4 cut(s) 51, 73, 371, 423
AfiI CCNNNNNNNGG 1 cut(s) 433
AflIII ACRYGT 1 cut(s) 61
AgsI TTSAA 2 cut(s) 279, 353
AjnI CCWGG 2 cut(s) 341, 487
AloI GAACNNNNNNTCC 2 cut(s) 87, 119
AluBI AGCT 4 cut(s) 115, 255, 322, 457
AluI AGCT 4 cut(s) 115, 255, 322, 457
Alw26I GTCTC 2 cut(s) 303, 368
AoxI GGCC 1 cut(s) 355
Asp700I GAANNNNTTC 1 cut(s) 464
AsuC2I CCSGG 1 cut(s) 267
AsuHPI GGTGA 1 cut(s) 202
BciT130I CCWGG 2 cut(s) 343, 489
BclI TGATCA 1 cut(s) 36
BcnI CCSGG 1 cut(s) 267
BcoDI GTCTC 2 cut(s) 303, 368
BfaI CTAG 3 cut(s) 252, 314, 383
BlpI GCTNAGC 1 cut(s) 323
BmcAI AGTACT 2 cut(s) 51, 371
Bme1390I CCNGG 3 cut(s) 267, 343, 489
BmiI GGNNCC 2 cut(s) 347, 486
BmrFI CCNGG 3 cut(s) 267, 343, 489
BmsI GCATC 3 cut(s) 133, 147, 306
Bpu1102I GCTNAGC 1 cut(s) 323
BpuEI CTTGAG 2 cut(s) 41, 350
BpuMI CCSGG 1 cut(s) 267
Bsa29I ATCGAT 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 303
BsaJI CCNNGG 1 cut(s) 488
BsaXI ACNNNNNCTCC 4 cut(s) 184, 214, 300, 330
Bsc4I CCNNNNNNNGG 1 cut(s) 433
Bse1I ACTGG 1 cut(s) 398
BseBI CCWGG 2 cut(s) 343, 489
BseCI ATCGAT 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 488
BseLI CCNNNNNNNGG 1 cut(s) 433
BseMII CTCAG 2 cut(s) 35, 125
BseNI ACTGG 1 cut(s) 398
BseRI GAGGAG 1 cut(s) 189
BseYI CCCAGC 1 cut(s) 255
BshFI GGCC 1 cut(s) 357
BshVI ATCGAT 1 cut(s) 141
BsiSI CCGG 2 cut(s) 13, 267
BslI CCNNNNNNNGG 1 cut(s) 433
BsmAI GTCTC 2 cut(s) 303, 368
BsnI GGCC 1 cut(s) 357
Bso31I GGTCTC 1 cut(s) 303
Bsp143I GATC 1 cut(s) 36
Bsp1720I GCTNAGC 1 cut(s) 323
BspANI GGCC 1 cut(s) 357
BspCNI CTCAG 2 cut(s) 36, 124
BspDI ATCGAT 1 cut(s) 141
BspLI GGNNCC 2 cut(s) 347, 486
BspTNI GGTCTC 1 cut(s) 303
BsrI ACTGG 1 cut(s) 398
BssECI CCNNGG 1 cut(s) 488
BssMI GATC 1 cut(s) 36
Bst2UI CCWGG 2 cut(s) 343, 489
Bst4CI ACNGT 1 cut(s) 79
BstDEI CTNAG 5 cut(s) 44, 111, 116, 224, 323
BstEII GGTNACC 1 cut(s) 190
BstKTI GATC 1 cut(s) 39
BstMAI GTCTC 2 cut(s) 303, 368
BstMBI GATC 1 cut(s) 36
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstNI CCWGG 2 cut(s) 343, 489
BstNSI RCATGY 1 cut(s) 65
BstPI GGTNACC 1 cut(s) 190
BstSCI CCNGG 3 cut(s) 265, 341, 487
Bsu15I ATCGAT 1 cut(s) 141
BsuRI GGCC 1 cut(s) 357
BsuTUI ATCGAT 1 cut(s) 141
BtsI GCAGTG 1 cut(s) 334
BtsIMutI CAGTG 1 cut(s) 334
ClaI ATCGAT 1 cut(s) 141
Csp6I GTAC 4 cut(s) 50, 72, 370, 422
CspCI CAANNNNNGTGG 2 cut(s) 64, 99
CviAII CATG 4 cut(s) 6, 62, 433, 471
CviJI RGCY 9 cut(s) 16, 115, 124, 207, 255, 322, 357, 382, 457
CviKI_1 RGCY 9 cut(s) 16, 115, 124, 207, 255, 322, 357, 382, 457
CviQI GTAC 4 cut(s) 50, 72, 370, 422
DdeI CTNAG 5 cut(s) 44, 111, 116, 224, 323
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
Eco147I AGGCCT 1 cut(s) 357
Eco31I GGTCTC 1 cut(s) 303
Eco57I CTGAAG 1 cut(s) 479
Eco91I GGTNACC 1 cut(s) 190
EcoO65I GGTNACC 1 cut(s) 190
EcoRII CCWGG 2 cut(s) 341, 487
FaeI CATG 4 cut(s) 9, 65, 436, 474
FaiI YATR 6 cut(s) 7, 63, 416, 434, 472, 482
FatI CATG 4 cut(s) 5, 61, 432, 470
FbaI TGATCA 1 cut(s) 36
FblI GTMKAC 1 cut(s) 390
FspBI CTAG 3 cut(s) 252, 314, 383
GsaI CCCAGC 1 cut(s) 259
HaeIII GGCC 1 cut(s) 357
HapII CCGG 2 cut(s) 13, 267
Hin1II CATG 4 cut(s) 9, 65, 436, 474
HpaII CCGG 2 cut(s) 13, 267
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 1 cut(s) 391
Hpy188III TCNNGA 4 cut(s) 20, 279, 301, 496
Hpy8I GTNNAC 1 cut(s) 391
HpyAV CCTTC 6 cut(s) 114, 232, 347, 391, 403, 454
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4V TGCA 4 cut(s) 86, 146, 286, 297
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
HpyF3I CTNAG 5 cut(s) 44, 111, 116, 224, 323
Hsp92II CATG 4 cut(s) 9, 65, 436, 474
Ksp22I TGATCA 1 cut(s) 36
Kzo9I GATC 1 cut(s) 36
LweI GCATC 3 cut(s) 133, 147, 306
MaeI CTAG 3 cut(s) 252, 314, 383
MaeIII GTNAC 2 cut(s) 190, 449
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 1 cut(s) 161
MluCI AATT 2 cut(s) 229, 505
MnlI CCTC 6 cut(s) 116, 207, 210, 372, 379, 430
MroXI GAANNNNTTC 1 cut(s) 464
MseI TTAA 2 cut(s) 261, 508
MspI CCGG 2 cut(s) 13, 267
MspR9I CCNGG 3 cut(s) 267, 343, 489
MvaI CCWGG 2 cut(s) 343, 489
MwoI GCNNNNNNNGC 1 cut(s) 121
NciI CCSGG 1 cut(s) 267
NdeII GATC 1 cut(s) 36
NlaIII CATG 4 cut(s) 9, 65, 436, 474
NlaIV GGNNCC 2 cut(s) 347, 486
NmuCI GTSAC 1 cut(s) 190
NspI RCATGY 1 cut(s) 65
PceI AGGCCT 1 cut(s) 357
PciI ACATGT 1 cut(s) 61
PdmI GAANNNNTTC 1 cut(s) 464
PflFI GACNNNGTC 1 cut(s) 314
PflMI CCANNNNNTGG 1 cut(s) 433
PfoI TCCNGGA 1 cut(s) 265
PscI ACATGT 1 cut(s) 61
Psp6I CCWGG 2 cut(s) 341, 487
PspEI GGTNACC 1 cut(s) 190
PspFI CCCAGC 1 cut(s) 255
PspGI CCWGG 2 cut(s) 341, 487
PspN4I GGNNCC 2 cut(s) 347, 486
PsyI GACNNNGTC 1 cut(s) 314
RsaI GTAC 4 cut(s) 51, 73, 371, 423
RsaNI GTAC 4 cut(s) 50, 72, 370, 422
SaqAI TTAA 2 cut(s) 261, 508
Sau3AI GATC 1 cut(s) 36
ScaI AGTACT 2 cut(s) 51, 371
ScrFI CCNGG 3 cut(s) 267, 343, 489
SfaNI GCATC 3 cut(s) 133, 147, 306
SmlI CTYRAG 2 cut(s) 20, 365
SmoI CTYRAG 2 cut(s) 20, 365
Sse9I AATT 2 cut(s) 229, 505
SseBI AGGCCT 1 cut(s) 357
SspMI CTAG 3 cut(s) 252, 314, 383
StuI AGGCCT 1 cut(s) 357
StyD4I CCNGG 3 cut(s) 265, 341, 487
TaaI ACNGT 1 cut(s) 79
TaqI TCGA 2 cut(s) 141, 300
TasI AATT 2 cut(s) 229, 505
TatI WGTACW 3 cut(s) 49, 369, 421
Tru1I TTAA 2 cut(s) 261, 508
Tru9I TTAA 2 cut(s) 261, 508
TscAI CASTG 1 cut(s) 334
TseFI GTSAC 1 cut(s) 190
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 1 cut(s) 108
TspRI CASTG 1 cut(s) 334
Tth111I GACNNNGTC 1 cut(s) 314
Van91I CCANNNNNTGG 1 cut(s) 433
XceI RCATGY 1 cut(s) 65
XmiI GTMKAC 1 cut(s) 390
XmnI GAANNNNTTC 1 cut(s) 464
XspI CTAG 3 cut(s) 252, 314, 383
ZrmI AGTACT 2 cut(s) 51, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.