Rorug03G0336300

NB-ARC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000540
Physical Location & Seq
Reverse (-)
39525703 .. 39526536
834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0336300.1

Sequence Viewer

Length: 744 bp
ATGGAGCTCCAAACCCCGCAACAAATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTATGTCAAGGGATTTAAGTGCCCAACTACAGAGCAGATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGGTATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGGGAACTAGTTCTCTTGGTACTGGTAGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTGATCTCAACTTTGGTTCCACCTATTCTACTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTCAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCTGAAGACTACTTCCGAGGAAGGTAGTGCACATGATTACTATTTCGGTGGCTCAGGCGGTTACAACCGTGGATCTCCAGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTGCTGACTAG

Protein Analysis

247

Amino Acids

26.8

Weight (kDa)

4.91

Isoelectric Point (pI)

46.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 38 - 99 5.7e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000540)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50950 AT3G50950
fragaria_vesca FvH4_1g12710 FvH4_1g12710 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820
malus_domestica MD02G1141100.v1.1 MD10G1333100.v1.1
prunus_persica Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.6G150700_v2.0.a1 Prupe.7G160100_v2.0.a1 Prupe.7G160100_v2.0.a1
pyrus_communis pycom02g11110 pycom10g28240 pycom10g28340 pycom10g28360 pycom10g28450
rosa_chinensis RchiOBHm_Chr2g0100711 RchiOBHm_Chr3g0485861 RchiOBHm_Chr4g0391451 RchiOBHm_Chr4g0391591 RchiOBHm_Chr4g0391601 RchiOBHm_Chr4g0391681 RchiOBHm_Chr5g0001141 RchiOBHm_Chr5g0001221
rosa_laevigata RLG00000017001
rosa_multiflora Rmu_co8260007.1_g000001 Rmu_co8260103.1_g000001 Rmu_co8519155.1_g000001 Rmu_sc0000060.1_g000050 Rmu_sc0000255.1_g000036 Rmu_sc0001174.1_g000023 Rmu_sc0001174.1_g000025 Rmu_sc0001659.1_g000009 Rmu_sc0001706.1_g000009 Rmu_sc0001706.1_g000024 Rmu_sc0001706.1_g000035 Rmu_sc0004189.1_g000018 Rmu_sc0004189.1_g000030 Rmu_sc0004862.1_g000002 Rmu_sc0004876.1_g000038 Rmu_sc0023741.1_g000004
rosa_roxburghii Rroxscaffold_1G00075100 Rroxscaffold_1G00075160 Rroxscaffold_1G00075210 Rroxscaffold_5G00337160 Rroxscaffold_5G00386590 Rroxscaffold_6G00396300
rosa_rugosa Rorug03G0336200 Rorug03G0336300 Rorug04G0389400
rosa_samantha Rh2AG140400 Rh2BG144100 Rh2CG145400 Rh2DG144900 Rh3AG271200 Rh4AG038000 Rh4AG038700 Rh4BG032000 Rh4BG032800 Rh4CG041100 Rh4CG041300 Rh4DG035500 Rh4DG035600 Rh5AG008800 Rh5AG009100 Rh5BG010900 Rh5BG011500 Rh5BG011600 Rh5BG012000 Rh5CG009400 Rh5CG010000 Rh5DG009800
rosa_wichuraiana Rw2G010940 Rw4G002950 Rw4G002990 Rw4G003000 Rw5G000880 Rw5G000950 Rw5G000960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 612
AccB7I CCANNNNNTGG 1 cut(s) 437
AccIII TCCGGA 1 cut(s) 728
AciI CCGC 2 cut(s) 17, 678
AclWI GGATC 8 cut(s) 165, 354, 402, 415, 435, 448, 483, 700
AcuI CTGAAG 1 cut(s) 644
AcyI GRCGYC 1 cut(s) 609
AfaI GTAC 2 cut(s) 115, 352
AfiI CCNNNNNNNGG 2 cut(s) 437, 599
AgsI TTSAA 1 cut(s) 575
AhlI ACTAGT 2 cut(s) 338, 467
AjnI CCWGG 2 cut(s) 116, 564
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AluBI AGCT 6 cut(s) 7, 77, 223, 434, 712, 734
AluI AGCT 6 cut(s) 7, 77, 223, 434, 712, 734
Alw21I GWGCWC 4 cut(s) 9, 600, 652, 714
Alw26I GTCTC 1 cut(s) 221
Alw44I GTGCAC 2 cut(s) 596, 648
AlwI GGATC 8 cut(s) 165, 354, 402, 415, 435, 448, 483, 700
Ama87I CYCGRG 1 cut(s) 285
Aor13HI TCCGGA 1 cut(s) 728
AoxI GGCC 1 cut(s) 428
ApaLI GTGCAC 2 cut(s) 596, 648
ApeKI GCWGC 3 cut(s) 74, 317, 734
ArsI GACNNNNNNTTYG 4 cut(s) 407, 439, 440, 472
Asp700I GAANNNNTTC 1 cut(s) 340
AspS9I GGNCC 3 cut(s) 381, 428, 462
AsuHPI GGTGA 1 cut(s) 554
AvaI CYCGRG 1 cut(s) 285
AvaII GGWCC 2 cut(s) 381, 462
BaeGI GKGCMC 4 cut(s) 188, 330, 600, 652
BamHI GGATCC 2 cut(s) 407, 440
BanII GRGCYC 3 cut(s) 9, 286, 714
BauI CACGAG 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 632
Bbv12I GWGCWC 4 cut(s) 9, 600, 652, 714
BbvI GCAGC 3 cut(s) 86, 304, 721
BccI CCATC 3 cut(s) 419, 476, 733
BceAI ACGGC 2 cut(s) 96, 616
BciT130I CCWGG 2 cut(s) 118, 566
BcoDI GTCTC 1 cut(s) 221
BcuI ACTAGT 2 cut(s) 338, 467
BfaI CTAG 3 cut(s) 339, 468, 742
BfmI CTRYAG 1 cut(s) 192
BglII AGATCT 1 cut(s) 210
BisI GCNGC 3 cut(s) 75, 318, 735
BlpI GCTNAGC 1 cut(s) 713
BlsI GCNGC 3 cut(s) 76, 319, 736
Bme1390I CCNGG 2 cut(s) 118, 566
Bme18I GGWCC 2 cut(s) 381, 462
BmeT110I CYCGRG 1 cut(s) 285
BmgT120I GGNCC 3 cut(s) 381, 428, 462
BmiI GGNNCC 7 cut(s) 30, 269, 382, 409, 442, 463, 511
BmrFI CCNGG 2 cut(s) 118, 566
BpiI GAAGAC 1 cut(s) 632
BpmI CTGGAG 5 cut(s) 117, 203, 306, 546, 681
Bpu10I CCTNAGC 1 cut(s) 673
Bpu1102I GCTNAGC 1 cut(s) 713
BpuEI CTTGAG 2 cut(s) 137, 728
BsaHI GRCGYC 1 cut(s) 609
BsaJI CCNNGG 3 cut(s) 330, 636, 688
BsaWI WCCGGW 1 cut(s) 728
Bsc4I CCNNNNNNNGG 2 cut(s) 437, 599
Bse1I ACTGG 7 cut(s) 229, 323, 358, 391, 400, 529, 698
BseAI TCCGGA 1 cut(s) 728
BseBI CCWGG 2 cut(s) 118, 566
BseDI CCNNGG 3 cut(s) 330, 636, 688
BseGI GGATG 2 cut(s) 536, 725
BseLI CCNNNNNNNGG 2 cut(s) 437, 599
BseMII CTCAG 2 cut(s) 687, 727
BseNI ACTGG 7 cut(s) 229, 323, 358, 391, 400, 529, 698
BseRI GAGGAG 3 cut(s) 68, 567, 570
BseSI GKGCMC 4 cut(s) 188, 330, 600, 652
BseXI GCAGC 3 cut(s) 86, 304, 721
BshFI GGCC 1 cut(s) 430
BsiHKAI GWGCWC 4 cut(s) 9, 600, 652, 714
BsiHKCI CYCGRG 1 cut(s) 285
BsiSI CCGG 1 cut(s) 729
BslI CCNNNNNNNGG 2 cut(s) 437, 599
BsmAI GTCTC 1 cut(s) 221
BsnI GGCC 1 cut(s) 430
BsoBI CYCGRG 1 cut(s) 285
Bsp1286I GDGCHC 7 cut(s) 9, 188, 286, 330, 600, 652, 714
Bsp13I TCCGGA 1 cut(s) 728
Bsp1720I GCTNAGC 1 cut(s) 713
Bsp19I CCATGG 1 cut(s) 330
BspACI CCGC 2 cut(s) 17, 678
BspANI GGCC 1 cut(s) 430
BspCNI CTCAG 2 cut(s) 686, 726
BspEI TCCGGA 1 cut(s) 728
BspLI GGNNCC 7 cut(s) 30, 269, 382, 409, 442, 463, 511
BspPI GGATC 8 cut(s) 165, 354, 402, 415, 435, 448, 483, 700
BsrI ACTGG 7 cut(s) 229, 323, 358, 391, 400, 529, 698
BssECI CCNNGG 3 cut(s) 330, 636, 688
BssNI GRCGYC 1 cut(s) 609
BssSI CACGAG 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 330
Bst2BI CACGAG 1 cut(s) 206
Bst2UI CCWGG 2 cut(s) 118, 566
Bst4CI ACNGT 1 cut(s) 689
Bst6I CTCTTC 1 cut(s) 585
BstACI GRCGYC 1 cut(s) 609
BstC8I GCNNGC 1 cut(s) 432
BstDEI CTNAG 2 cut(s) 673, 713
BstDSI CCRYGG 2 cut(s) 330, 688
BstEII GGTNACC 1 cut(s) 617
BstF5I GGATG 2 cut(s) 536, 725
BstMAI GTCTC 1 cut(s) 221
BstNI CCWGG 2 cut(s) 118, 566
BstPI GGTNACC 1 cut(s) 617
BstSCI CCNGG 2 cut(s) 116, 564
BstSFI CTRYAG 1 cut(s) 192
BstSLI GKGCMC 4 cut(s) 188, 330, 600, 652
BstV1I GCAGC 3 cut(s) 86, 304, 721
BstV2I GAAGAC 1 cut(s) 632
BstX2I RGATCY 7 cut(s) 157, 210, 359, 407, 440, 488, 692
BstXI CCANNNNNNTGG 1 cut(s) 77
BstYI RGATCY 7 cut(s) 157, 210, 359, 407, 440, 488, 692
BsuRI GGCC 1 cut(s) 430
BtgI CCRYGG 2 cut(s) 330, 688
BtsCI GGATG 2 cut(s) 536, 725
BtsIMutI CAGTG 2 cut(s) 330, 384
Cac8I GCNNGC 1 cut(s) 432
Cfr13I GGNCC 3 cut(s) 381, 428, 462
CsiI ACCWGGT 1 cut(s) 116
Csp6I GTAC 2 cut(s) 114, 351
CviAII CATG 3 cut(s) 94, 331, 653
CviQI GTAC 2 cut(s) 114, 351
DdeI CTNAG 2 cut(s) 673, 713
Eam1104I CTCTTC 1 cut(s) 585
EarI CTCTTC 1 cut(s) 585
Ecl136II GAGCTC 2 cut(s) 7, 712
Eco130I CCWWGG 1 cut(s) 330
Eco24I GRGCYC 3 cut(s) 9, 286, 714
Eco47I GGWCC 2 cut(s) 381, 462
Eco53kI GAGCTC 2 cut(s) 7, 712
Eco57I CTGAAG 1 cut(s) 644
Eco88I CYCGRG 1 cut(s) 285
Eco91I GGTNACC 1 cut(s) 617
EcoICRI GAGCTC 2 cut(s) 7, 712
EcoO65I GGTNACC 1 cut(s) 617
EcoRII CCWGG 2 cut(s) 116, 564
EcoT14I CCWWGG 1 cut(s) 330
EcoT38I GRGCYC 3 cut(s) 9, 286, 714
ErhI CCWWGG 1 cut(s) 330
FaeI CATG 3 cut(s) 97, 334, 656
FaiI YATR 6 cut(s) 95, 168, 234, 240, 332, 654
FatI CATG 3 cut(s) 93, 330, 652
FauI CCCGC 1 cut(s) 24
Fnu4HI GCNGC 3 cut(s) 75, 318, 735
FokI GGATG 2 cut(s) 523, 712
FriOI GRGCYC 3 cut(s) 9, 286, 714
Fsp4HI GCNGC 3 cut(s) 75, 318, 735
FspBI CTAG 3 cut(s) 339, 468, 742
GluI GCNGC 3 cut(s) 75, 318, 735
GsuI CTGGAG 5 cut(s) 117, 203, 306, 546, 681
HaeIII GGCC 1 cut(s) 430
HapII CCGG 1 cut(s) 729
Hin1I GRCGYC 1 cut(s) 609
Hin1II CATG 3 cut(s) 97, 334, 656
HinfI GANTC 3 cut(s) 124, 147, 202
HpaII CCGG 1 cut(s) 729
HphI GGTGA 1 cut(s) 554
Hpy166II GTNNAC 4 cut(s) 384, 465, 598, 650
Hpy188I TCNGA 1 cut(s) 637
Hpy188III TCNNGA 6 cut(s) 134, 206, 271, 287, 707, 729
Hpy8I GTNNAC 4 cut(s) 384, 465, 598, 650
HpyAV CCTTC 1 cut(s) 635
HpyCH4III ACNGT 1 cut(s) 689
HpyCH4IV ACGT 2 cut(s) 276, 609
HpyCH4V TGCA 3 cut(s) 544, 598, 650
HpyF3I CTNAG 2 cut(s) 673, 713
HpySE526I ACGT 2 cut(s) 276, 609
Hsp92I GRCGYC 1 cut(s) 609
Hsp92II CATG 3 cut(s) 97, 334, 656
Kpn2I TCCGGA 1 cut(s) 728
LmnI GCTCC 4 cut(s) 4, 12, 325, 731
Lsp1109I GCAGC 3 cut(s) 86, 304, 721
MabI ACCWGGT 1 cut(s) 116
MaeI CTAG 3 cut(s) 339, 468, 742
MaeII ACGT 2 cut(s) 276, 609
MaeIII GTNAC 2 cut(s) 617, 680
MboII GAAGA 2 cut(s) 572, 637
MflI RGATCY 7 cut(s) 157, 210, 359, 407, 440, 488, 692
MhlI GDGCHC 7 cut(s) 9, 188, 286, 330, 600, 652, 714
MluCI AATT 3 cut(s) 373, 421, 454
MroI TCCGGA 1 cut(s) 728
MroXI GAANNNNTTC 1 cut(s) 340
MseI TTAA 1 cut(s) 180
MspA1I CMGCKG 3 cut(s) 77, 223, 434
MspI CCGG 1 cut(s) 729
MspR9I CCNGG 2 cut(s) 118, 566
MvaI CCWGG 2 cut(s) 118, 566
NcoI CCATGG 1 cut(s) 330
NlaIII CATG 3 cut(s) 97, 334, 656
NlaIV GGNNCC 7 cut(s) 30, 269, 382, 409, 442, 463, 511
PaeR7I CTCGAG 1 cut(s) 285
PcsI WCGNNNNNNNCGW 1 cut(s) 606
PdmI GAANNNNTTC 1 cut(s) 340
PfeI GAWTC 3 cut(s) 124, 147, 202
PflMI CCANNNNNTGG 1 cut(s) 437
PkrI GCNGC 3 cut(s) 76, 319, 736
Psp124BI GAGCTC 2 cut(s) 9, 714
Psp6I CCWGG 2 cut(s) 116, 564
PspEI GGTNACC 1 cut(s) 617
PspGI CCWGG 2 cut(s) 116, 564
PspN4I GGNNCC 7 cut(s) 30, 269, 382, 409, 442, 463, 511
PspPI GGNCC 3 cut(s) 381, 428, 462
PsuI RGATCY 7 cut(s) 157, 210, 359, 407, 440, 488, 692
PvuII CAGCTG 3 cut(s) 77, 223, 434
RsaI GTAC 2 cut(s) 115, 352
RsaNI GTAC 2 cut(s) 114, 351
SacI GAGCTC 2 cut(s) 9, 714
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 3 cut(s) 75, 318, 735
Sau96I GGNCC 3 cut(s) 381, 428, 462
ScrFI CCNGG 2 cut(s) 118, 566
SduI GDGCHC 7 cut(s) 9, 188, 286, 330, 600, 652, 714
SexAI ACCWGGT 1 cut(s) 116
SfcI CTRYAG 1 cut(s) 192
Sfr274I CTCGAG 1 cut(s) 285
SinI GGWCC 2 cut(s) 381, 462
SlaI CTCGAG 1 cut(s) 285
SmlI CTYRAG 3 cut(s) 152, 285, 707
SmoI CTYRAG 3 cut(s) 152, 285, 707
SpeI ACTAGT 2 cut(s) 338, 467
Sse9I AATT 3 cut(s) 373, 421, 454
SsiI CCGC 2 cut(s) 17, 678
SspMI CTAG 3 cut(s) 339, 468, 742
SstI GAGCTC 2 cut(s) 9, 714
StyD4I CCNGG 2 cut(s) 116, 564
StyI CCWWGG 1 cut(s) 330
TaaI ACNGT 1 cut(s) 689
TaiI ACGT 2 cut(s) 279, 612
TaqI TCGA 2 cut(s) 286, 414
TasI AATT 3 cut(s) 373, 421, 454
TfiI GAWTC 3 cut(s) 124, 147, 202
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 2 cut(s) 330, 391
TseI GCWGC 3 cut(s) 74, 317, 734
TspDTI ATGAA 1 cut(s) 314
TspRI CASTG 2 cut(s) 330, 391
Van91I CCANNNNNTGG 1 cut(s) 437
VneI GTGCAC 2 cut(s) 596, 648
VpaK11BI GGWCC 2 cut(s) 381, 462
XhoI CTCGAG 1 cut(s) 285
XmnI GAANNNNTTC 1 cut(s) 340
XspI CTAG 3 cut(s) 339, 468, 742
ZraI GACGTC 1 cut(s) 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.